LOC110495784 (LOC106574551)


Basic Information

Item Value
gene id LOC110495784
gene name LOC106574551
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 20206484 ~ 20236753 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571212.2
GAGATGTTGACTTGAAGAGCCAGCCTTAAGCGACACAAAAGTATTATTTAAAAACATTGTCGTGGTGACGCAAAGGTTTAAAATGAACAGTGAACCGGTGGCTATAGAGAGATGCATGGGTAGTGCGTGTGCACCGGGTGGTTATGCTACTAATGACAGCGTGATGCATTTATGAGAGCTTGCAGTCGCCGCCTCCGGACAGAGCCGTTGTCGAAGAAGATGCTGAATCAGCTGCGCGCTCGTGAGATAGACTACCCCGGGTAGGCTATGTCTGTTTTTCAAATTTCACAAATGTCTCCTTTGCTTCTGACAATAGAAGACGATACATTGGCATAGCGTTgggaatagttttttttttttttttacattttgctgCTGGAAATAAATAAGCTGCCTGTCTAGAGAGATGTTCATCGCTCCAAAGGAGACATCAAGTTTGACAACTGTAACCATCTAGGCTACGATGAAGCAGGGTGCACGAGGAGTTAGAGCATTTGGTTTGGCTGGAGACTTTATGTTACCGCTTATATCAATGGCATGACTATTTCACCAAGCACAATGGAGGATAAATCCAACAAACTCATTTTGATTCCGATACTGGCCGTGGTCTTCTTGATGATAGGCTATCAGTACATTTGTCCAGCCGGCAGTAACTCTTGTCGCTTCCTAACTGGGGACAAGTTGAGTGGAATGTTCCGCCAATATCACTCGGGGGACGACATTTACGCGTACCAAGAAGGGCTGGAGTCGGAGGGTTCCTCAAAAACTCTGTCCAAATTCAATTTTACTGACCGAGACCTTGAGCGACACGTGGATTTCAACATCAAAGGAGATGACGTTATAGTGTTCCTCCACATCCAGAAGACCGGTGGGACTACTTTCGGACGGCACCTTGTCCGAAACATTCACCTCGAACAGCCCTGTGATTGTATGCCAGGACAGAAGAAATGTACCTGTCACCGCCCGGGCAAAGCGGAGTCCTGGCTTTTCTCTAGGTTCTCTACTGGCTGGAGTTGTGGTCTACATGCGGACTGGACCGAGCTGACTAACTGCGTGCCTGTAGTGATGAACAAGAAAGACAAGAAGGATGCTCAGAGGGACCGACGGAACTTCTACTACATCACCATGCTAAGGGACCCGGTCTCCCGCTACCTGAGCGAGTGGAAGCACGTGCAGCGTGGAGCCACCTGGAAGACCGCCCTGCACATGTGTGACGGCCGCTCTCCTACCCAGGACGAACTGCCCGCCTGCTACAGTGGCAACGACTGGACCGGGGTCACGCTGACCAACTTCATGGACTGCCCTTCCAACCTGGCCAACAACCGGCAGGTCCGCATGCTGGCCGACCTCAGCCTGGTGGGCTGCTACAACGTCTCCACCATCGGCGCCGAACGGGAGCGCGGCCGTGTCCTACTAGCCAGTGCCAAGAACAACCTCCGCAACATGGCCTTCTTCGGCCTGACCGAGTTCCAGCGCAAGACGCAGTACCTGTTTGAGCGGACGTTCGGCCTGCGCTTCATCCAGGCTTTCACGCAGATCAACAGCACGCGGGCGGCTAGcgtgggggtgggggagggggctcTGCGGCGGCGCATCGAGGGGCTCAATGCCCTGGACGTGGAGCTGTACGAGTACGCCAAGGAGCTGTTCCTCCGGAGGTACCAGTACAGCCGCCAGACACAGCACCGGGAGcagaggctgaggaggaggcaggagaggcaggaggagaggcAGTGGCTACACCAGCACACAGCCCCCATCTCCAAAgccaggagggaggaggaggagagggagatagagggggtggaaggggaggaggtgggaggtgTAGCCACCACAGAGGACTACAGCAGCCAGGTGGTGAGATGGTGAGGCCGCAACACCCATGCAAGGACTAGTACTTCctgtcagtttctctctctctctctttgtctctctctctctctctctctcgctctctctctctctctgccttgggCTGCCCAATGGTGTCTTAATCTTTCAAATAGATGTATTTATTATCACTATTTATCATGATGTTGTCAACTTTAGTTTCTCCTCTCATGCAGAGTTTATTGTGTGTGTTCATTTTCTAATGCTTGTCTGTTCTTCAAAGTAGGTGAACAACTCAAATGGACATTCTACAAGATTTGATCAGAATCTCCATGGGACTGTATGTAAACAAAATAAGCGCCTCAAGATTCTTGAAAAATAATGTGGTTCgcttagggttgcaaagggagggtatattactagAAACTTtcgaagtttaccagtaaactgcCAGGATTTTGGTAGCTTTCTTTTTGTATTTTATCAGATGGCATCTACTGGCcattttgggtacttcagattatcacaggtgtcagTAATTATCTATGGCCCTCtatgtggccttatcacatgtaaaatgtataaaataatcaAGTAAGATGATTCTAAAATAAGAAATTAAATGTAAAACCTGTAAAATATTATCCTAATATAAACCATCAATCAaaaccattggtgtttaatatgagggtttcagcattaaacacctttatatttttttcacacatttttatttatttgactatgtctttgttgtaaatgttttggcGACAAtgtggtggcagttgtgaaaaaaagtcaataggtggaagagttgcagagttagATGAAAATAATGACATTCTTAATTAGATGCTTTTTAAaaattaattaggctattttctcttgaaccatatgatctatccactagaaactcatggaatatatggacacagatattttaaaaaaatgtatacatatatgaatataattttttttaagtTATTTGAGTAAATGACCAAAGTTACCAAAGATTACATtttaattaccaaaattactgaagattccATTAACCTAACTTTACAACATAGGACTTGCTCATGATTTCTAAAGTAAGATATGTTAGTAAATAACACAATAAATTATTAATTAACCACCCTCCCATACTTTGGTTATTTCAGGACAGGACTTGTATTAGTTTACCTTGTAAGTTTGCTTTCCAACTATGAgttagtatgtacagtatgatggTATTCAAGACATTCACCTGTAGGAAAGTTGTGCATTAAATGTACGCTGCATACCAC
>TU1745087
GACTTGAAGAGCCAGCCTTAAGCGACACAAAAGTATTATTTAAAAACATTGTCGTGGTGACGCAAAGGTTTAAAATGAACAGTGAACCGGTGGCTATAGAGAGATGCATGGGTAGTGCGTGTGCACCGGGTGGTTATGCTACTAATGACAGCGTGATGCATTTATGAGAGCTTGCAGTCGCCGCCTCCGGACAGAGCCGTTGTCGAAGAAGATGCTGAATCAGCTGCGCGCTCGTGAGATAGACTACCCCGGGTAGGCTATGTCTGTTTTTCAAATTTCACAAATGTCTCCTTTGCTTCTGACAATAGAAGACGATACATTGGCATAGCGTTgggaatagttttttttttttttttacattttgctgCTGGAAATAAATAAGCTGCCTGTCTAGAGAGATGTTCATCGCTCCAAAGGAGACATCAAGTTTGACAACTGTAACCATCTAGGCTACGATGAAGCAGGGTGCACGAGGAGTTAGAGCATTTGGTTTGGCTGGAGACTTTATGTTACCGCTTATATCAATGGCATGACTATTTCACCAAGCACAATGGAGGATAAATCCAACAAACTCATTTTGATTCCGATACTGGCCGTGGTCTTCTTGATGATAGGCTATCAGTACATTTGTCCAGCCGGCAGTAACTCTTGTCGCTTCCTAACTGGGGACAAGTTGAGTGGAATGTTCCGCCAATATCACTCGGGGGACGACATTTACGCGTACCAAGAAGGGCTGGAGTCGGAGGGTTCCTCAAAAACTCTGTCCAAATTCAATTTTACTGACCGAGACCTTGAGCGACACGTGGATTTCAACATCAAAGGAGATGACGTTATAGTGTTCCTCCACATCCAGAAGACCGGTGGGACTACTTTCGGACGGCACCTTGTCCGAAACATTCACCTCGAACAGCCCTGTGATTGTATGCCAGGACAGAAGAAATGTACCTGTCACCGCCCGGGCAAAGCGGAGTCCTGGCTTTTCTCTAGGTTCTCTACTGGCTGGAGTTGTGGTCTACATGCGGACTGGACCGAGCTGACTAACTGCGTGCCTGTAGTGATGAACAAGAAAGACAAGAAGGATGCTCAGAGGGACCGACGGAACTTCTACTACATCACCATGCTAAGGGACCCGGTCTCCCGCTACCTGAGCGAGTGGAAGCACGTGCAGCGTGGAGCCACCTGGAAGACCGCCCTGCACATGTGTGACGGCCGCTCTCCTACCCAGGACGAACTGCCCGCCTGCTACAGTGGCAACGACTGGACCGGGGTCACGCTGACCAACTTCATGGACTGCCCTTCCAACCTGGCCAACAACCGGCAGGTCCGCATGCTGGCCGACCTCAGCCTGGTGGGCTGCTACAACGTCTCCACCATCGGCGCCGAACGGGAGCGCGGCCGTGTCCTACTAGCCAGTGCCAAGAACAACCTCCGCAACATGGCCTTCTTCGGCCTGACCGAGTTCCAGCGCAAGACGCAGTACCTGTTTGAGCGGACGTTCGGCCTGCGCTTCATCCAGGCTTTCACGCAGATCAACAGCA
>TU1745088
GACTACAGCAGCCAGGTGGTGAGATGGTGAACAACTCAAATGGACATTCTACAAGATTTGATCAGAATCTCCATGGGACTGTATGTAAACAAAATAAGCGCCTCAAGATTCTTGAAAAATAATGTGGTTCgcttagggttgcaaagggagggtatattactagAAACTTtcgaagtttaccagtaaactgcCAGGATTTTGGTAGCTTTCTTTTTGTATTTTATCAGATGGCATCTACTGGCcattttgggtacttcagattatcacaggtgtcagTAATTATCTATGGCCCTCtatgtggccttatcacatgtaaaatgtataaaataatcaAGTAAGATGATTCTAAAATAAGAAATTAAATGTAAAACCTGTAAAATATTATCCTAATATAAACCATCAATCAaaaccattggtgtttaatatgagggtttcagcattaaacacctttatatttttttcacacatttttatttatttgactatgtctttgttgtaaatgttttggcGACAAtgtggtggcagttgtgaaaaaaagtcaataggtggaagagttgcagagttagATGAAAATAATGACATTCTTAATTAGATGCTTTTTAAaaattaattaggctattttctcttgaaccatatgatctatccactagaaactcatggaatatatggacacagatattttaaaaaaatgtatacatatatgaatataattttttttaagtTATTTGAGTAAATGACCAAAGTTACCAAAGATTACATtttaattaccaaaattactgaagattccATTAACCTAACTTTACAACATAGGACTTGCTCATGATTTCTAAAGTAAGATATGTTAGTAAATAACACAATAAATTATTAATTAACCACCCTCCCATACTTTGGTTATTTCAGGACAGGACTTGTATTAGTTTACCTTGTAAGTTTGCTTTCCAACTATGAgttagtatgtacagtatgatggTATTCAAGACATTCACCTGTAGGAAAGTTGTGCATTAAATGTACGC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571212.2 False 3119 mRNA 0.45 2 20206484 20236753
TU1745087 False 1538 TUCP 0.51 2 20206492 20235180
TU1745088 True 1016 lncRNA 0.31 2 20235477 20236743

Neighbor

gene id symbol gene type direction distance location
si:busm1-52i16.2 LOC106574552 coding upstream 36139 20167233 ~ 20170345 (+)
LOC110495779 LOC106575341 coding upstream 42020 20162785 ~ 20164464 (+)
LOC110495776 LOC106574545 coding upstream 95866 20065965 ~ 20110618 (+)
LOC110495777 LOC106574545 coding upstream 157430 19992559 ~ 20049054 (+)
timmdc1 cc001 coding upstream 223534 19975014 ~ 19982950 (+)
LOC110497092 NA coding downstream 7601 20244354 ~ 20245888 (+)
LOC110495788 LOC106574550 coding downstream 59264 20296017 ~ 20302100 (+)
LOC110495791 LOC106575306 coding downstream 76784 20312098 ~ 20328610 (+)
LOC110495794 LOC106574560 coding downstream 290926 20527679 ~ 20552117 (+)
LOC110495795 LOC106574563 coding downstream 368133 20604886 ~ 20614129 (+)
G1524059 NA non-coding upstream 13921 20192335 ~ 20192563 (+)
G1524034 LOC106575314 non-coding upstream 79556 20125068 ~ 20126928 (+)
G1524032 NA non-coding upstream 81897 20123848 ~ 20124587 (+)
G1523997 LOC106575314 non-coding upstream 88271 20052769 ~ 20118213 (+)
G1523994 NA non-coding upstream 101633 20049902 ~ 20104851 (+)
G1524092 NA non-coding downstream 13525 20250278 ~ 20250488 (+)
G1524097 NA non-coding downstream 22434 20259187 ~ 20260077 (+)
G1524098 LOC106574546 non-coding downstream 23951 20260704 ~ 20260919 (+)
G1524099 NA non-coding downstream 24678 20261431 ~ 20261658 (+)
G1524100 LOC106574546 non-coding downstream 25377 20262130 ~ 20262714 (+)
LOC110495771 LOC106574539 other upstream 306465 19897030 ~ 19900020 (+)
G1523847 NA other upstream 378518 19775092 ~ 19827966 (+)
LOC110495769 LOC106575326 other upstream 445464 19748427 ~ 19761242 (+)
G1524124 LOC106574554 other downstream 68952 20305705 ~ 20306904 (+)
G1524181 LOC106574559 other downstream 236607 20473360 ~ 20483713 (+)
G1525320 NA other downstream 519938 20756691 ~ 20757412 (+)
LOC110497098 LOC106574424 other downstream 2362660 22599016 ~ 22641368 (+)
G1528194 NA other downstream 2922080 23158833 ~ 23161291 (+)
G1524069 NA non-coding upstream 23473 20211265 ~ 20212004 (+)
LOC110495784 LOC106574551 other upstream 297 20206484 ~ 20236753 (+)

Expression


Co-expression Network