LOC110495787 (LOC106574546)


Basic Information

Item Value
gene id LOC110495787
gene name LOC106574546
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 20259167 ~ 20290820 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036952237.1
agctggaaagtgggctggaaagtgagctacGTTTaagggatctacgtgtttgagagtgtgagttggaagcagacctTACAACTCCTGCCTAAACTCTCCTGAAATGAGTAACTTGAACAGGTTAGATGACCAACCCCATATCACTGGGATAATCCAAAATGCACCTAAACAGACAGAGTTGGCTGATGAGGGGTGTCCTCTGGCCCTGAAGTGTGCGTGTgacaagggagagaggggaccCATTGGCCTCCAGGGCAAGAAGGGGAATTCTGGAGATGATGGTAACCCAGGTGTTAAAGGATCGAAGGGTGAGAGCGGGCTCAGTGGACTTCCTGGTCGAAATGGGGAAGAGGGCAAGCCGGGCTACAAAGGAGAGCAGGGGGAGAGTGGAGAATGTGGCACACCTGGAATCAAAGGAGACAGGGGGCCTGAGGGGCCAGTTGGCACCAGGGGAAACAGAGGGCTACAGGGGTTACCTGGTCCAAATGGCGATGCCGGGCCTGAGGGTCTCATAGGGAAAAAAGGTGAGCGGGGACTTTCTGGGCCACCTGGAATACAAGGAGAAACTGGGATCGGGCTTCCTGGACACAAGGGTGATGTGGGGTTCCAGGGACGACTGGGGCCTCCGGGACCACCTGGCTTAGGGGAACCTGGACTACCGGGGCCTCAAGGGCCACAGGGCGTCCAAGGAGAGAAGGGTCCTATAGGAGAAGGCTTTGCCGGGCCAAAGGGGGACCGGGGCCTGGAGGGGCCGAGGGGACCTAGAGGACAGCCCGGCGCTGGACTGAAAGGAGACAAGGGTGGCTTTGGCCCTCCAGGTTTTCCAGGGCCTGTCGGCCTGCCAGGCCTGGGCATTCAGGGGGAGAAGGGTATAGAGGGGCCACGGGGGCCACCAGGGGGCAGGGGCCCACAAGGAGATGGATATCCAGGGCCCAAGGGTGACCAGGGCTTACCAGGGGAGCTTGGttcaacaggagagaggggggctgGCGAACCTGGGGATAAGGGTGAGCCAGGAGCGTCAGGATTGGCTGGTTTTCCTGGCCTCCCAGGAGAGGATGGGGCCCCGGGACAGAAGGGTGAACCAGGTGTTGGTGGTCTGAGGGGACCAGAGGGAGCTGCGGGGATTGGCACCCAGGGTGAGAAGGGAGACCAGGGCCAGAGGGGCATTCGGGGCTTGGGTGGGCCTCCTGGAATCGCCGGGCCCTCTGGAGCAAAGGGGGAGCCTGGGACACCAGGTCGACTGGGTATGCCAGGACTTCCAGGGCGGGGAATCATAGGACCTAAGGGCAATCTTGGCCCACCTGGTCCATCTGGACCAATAGGAGAGACGGGCTACGGGCTGCCTGGTCCTAAGGGTGATCGTGGAGGTCCTGGTCCGTCTGGTCCATTTGGGCCCAAAGGTGATGGTTATCCTGGCCCTACGGGAACACCTGGTCTACCGGGGCTTCCTGGTGAACCAGGCCTGGAGGGGCTGGGCATCCCTGGACCGAAGGGCGATATTGGCTTCAGGGGCTTTCCAGGTTTAGCAGGCCCCCCAGGCGAGGGGCTACAAGGTCTACCGGGTGGCATTGGACGACTGGGCCCCCCAGGGCCAACGGGGCCCCCTGGGCAGGGTATTCAGGGGCCAAAGGGCGAGGCAGGGTCTCAGGGCGTGACGGGCCCTCGGGGGCCACCAGGGGAAGGATTCACAGGGGCCAAGGGTGACCGCGGCTCTGGAGGGGAGAGGGGCCTGAAGGGGGTCAAAGGTGATTTGGGTGACCCTGGAGTTCCTGGCCAATCAGGCAGACCAGGGTTCAAAGGTGACATGGGCCTCACAAGAGAAGACATCATTAAAATGATCAAGGAGATTTGTGGTTGCGGAATCAAATGCAAGGAGCGGCCCATGGAGCTGGTGTTCGTCATTGACAGCTCGGAGAGCGTGGGGCCGGAGAACTTTGAGATCATCAAGGACTTTGTGGCGGCCCTGGTGGACCGTGTGACGGTGGGCCGCAACGCCACCCGCATAGGCCTGGTCCTCTACAGCCTGGAGGTCAAGCTAGAGTTCAACCTGGTGCGCCACATGACCAAGCAGGAAGTCAAACAGGCCATACGAAAAATCCATTATATAGGTGAGGGCACCCACACAGGCACCGCCATCCGCAAGGCCACCCAGGAGGCCTTCTACAGCTCTCGCAAAGGGGTGAGTAAAGTGGCTATAGTTAttacagacggacagacggataAGCGGGAGCCGGTGAAGCTGGATATTGCGGTGCGGGAGGCGCACGCAGCCAACATCGAGATGTACGCATTGGGGATCGTGAATACGTCAGACCCCACGCAGCCCGAGTTCCTGAGGGAGCTCAACCTGATCGCGTCGGACCCTGATAGTGAACACATGTACCTCATTGATGACTTCAACACGCTGCCAGctctggaGTCCAAGCTCGTCAGCAAGTTCTGTGAAGACGAGAACGGTGGTCTGGTATACAACGGCTACGGCAACAATGGACACAGGAACGGGAACAATGGGAACTATGGCAACGGGGGCAATGGCTATGGAATCACCAATCAGGAGGACTTCAACAACAGGAGGCGGACAGTCACCACTACCGGCACTCAAAGTCAGGGTGGCAGCGTAGACCTGACCCAGCCTATCAACCCTGGCACTGCCACAGTACAGATAGGGCAGCGTGAGGGAGGCCAGGATGGAGGTATTTACACCCAGGATTGGGGGACTGGTCGCGGGGACGTTCCCACGTTGAACCGcaacacatcctcctcctccagggATTCCTCATCTTCCAATACAGGAGggtcctcttcctcatcatcatcagGAACGTCATCTTCATCCTCAGGGTCCTCAGGCTCTGTCCAGTTAGTGCCTGCATCACGACCCGCACTTCCCAAAGAGTTTGTGCCTCTGGACCCTCGCTGTGCACTGGTCCTAGACCAGGGCCCCTGCCGGGACTACAAAATGCGCTGGTACTACGACAAGCAGGCCAACGCATGCGCCCAGTTCTGGTACGGAGCCTGTGAGGGGAACCAGAACCGCTTCGACACAGAGGAGGAGTGTAAGAGGACATGCGTGCAAGGCAGAGCAGGCTGAGAAGACATCTCACTCAATTCAGTCTTTAAACCGATGTTCCATGGCACCATGTACTTCACGATGGAAGGAGGTCAAGTCATGACAGTATGTTGTACTATTGGATAAATGCTTGTTTGACACtccctagtcccccccccccaccctaccCTTGAACTAAAACTCTACGCACTTATTATAAATATTCATATACTAATTCCAGTGTCTGATTTGAACTTTAATTTTACCGCCAATCTCTGTAAAATGTTtcattaaaggtccaatgcagccgtttttatctcaatatcaaatcatttctggatgacaattaagtaccttactgtggtttggaactctttcttattggtctattaactaatttaccacctggtgatttcaccatggaaggccaaaactccatcccaccaaaacaggctgaaatttcaggcactCTTTCAAACAACTCTTACACTAAAGGGGCATTATCaatattttcacaatttcacagtaatCCTTCAGCCTCATAATGTGGAaacatatataaaacacaggcaaatctagtttttgactgcactgggcctttaatttaACATTACCATTTTCATTCAAAATGAATGGATAGCTCATCATATAACATCATTTTATCACACAATTCAGTCAATCTCACTCAGGTATGTAGTCAAGAAATAGTAGAAAATACCACTTAGTATTAGACACTGATTCattaatacatacagttgaaattggaagttAACATGCACCTTACCAAATACATTTGACCAAATTCAAATacttttttcacaattccagttttTCACATTTACTCCTAGAAGGTctgaggtcagttaggatcaccactttttattttaagaatgtgaaatgtcagaataatagtatagagaattatttatttcagcttttatttctttcatcacattcccagtggatcagaagtttatata
>XM_036952236.1
aTGGCTGCAGCTAAAGAAACCTCAGGAAACCCAGTGTGAACCAGAGCACAGACCTCCACAGACCCTCTACTCACTGCTGCCGTACTGCAGACATCCTACCTGACCTGACCAGCTCCCATCCTGCAGACTGACACCATCACAGGAGCAGGACAAGAGCAGGAGTCTAAGTGGAACTTTACCTGAACAACACTTGAAACTGTCTTATTTTTTCCTCTGCTTCTCTTGCTCCCTCTGATTCTCTCATGTGCATCTTTCCCAATCCTGAACACTGAGCTGAGTATATTGGAGACCTGAGCCTGCAGCACTGTATTaggaggagaacagatggTGATGTCCCCTTCTCTGTACTGGTTCTTGCTGCTCTGTAGACTCCACAGTCTCTGGGCTCAGGATGACTATAGCACACATGATGATAGAACCATGGACAGGAGAGCCAAGAACCAACTACTGACAAccaacgtcatacccaagaatggCCAATCACTTTTGAACGATGACTGTGGCCTGGAGCTGGCCTTCCTGGTGGACAGCTCGGAGAGCGCCAAGGACAACCACGCCCAGGAGAAGAGGTTCGCCACAGATGTGGTTGAACGCCTGCAGGGGGTCAATCTCCAGACGGGCCGGGCTCTCAGCTCGCGAGCCGCCCTCCTGCAGTTCAGCAGCCATGTGATCATCGAGCAGACCTTCAAGCAGTGGAGGGGGGTGGCCAACTTCAAGGCTCGCATCGCACCCATCGGATACATCGGCCACGGCACCTACACCACCTACGCCATCACCAACCTGACCAAGATCTACATGGAGGAGTCAGAGCCAGGGAGCATCAGGGTGGCCATACTGCTGACAGACGGCATCCTCCACCCCAGGAACCCAGACATCTTCTCCGCCGTGGTCGACGCCAAAAACCAGGGTGTGAAGTTCTTCATGGTGGGCATCACGCCCGCGGCCAATGACATCTCCAACGTGGCACAGCTCCGCCGGCTGGCTAGCTCCCCAGCCAATCGCTACCTCCATAACCTTCAGGACAGGGGCATCGTGGAAAAGGTCATCAAAGAGATTACAGAGTTGGCTGATGAGGGGTGTCCTCTGGCCCTGAAGTGTGCGTGTgacaagggagagaggggaccCATTGGCCTCCAGGGCAAGAAGGGGAATTCTGGAGATGATGGTAACCCAGGTGTTAAAGGATCGAAGGGTGAGAGCGGGCTCAGTGGACTTCCTGGTCGAAATGGGGAAGAGGGCAAGCCGGGCTACAAAGGAGAGCAGGGGGAGAGTGGAGAATGTGGCACACCTGGAATCAAAGGAGACAGGGGGCCTGAGGGGCCAGTTGGCACCAGGGGAAACAGAGGGCTACAGGGGTTACCTGGTCCAAATGGCGATGCCGGGCCTGAGGGTCTCATAGGGAAAAAAGGTGAGCGGGGACTTTCTGGGCCACCTGGAATACAAGGAGAAACTGGGATCGGGCTTCCTGGACACAAGGGTGATGTGGGGTTCCAGGGACGACTGGGGCCTCCGGGACCACCTGGCTTAGGGGAACCTGGACTACCGGGGCCTCAAGGGCCACAGGGCGTCCAAGGAGAGAAGGGTCCTATAGGAGAAGGCTTTGCCGGGCCAAAGGGGGACCGGGGCCTGGAGGGGCCGAGGGGACCTAGAGGACAGCCCGGCGCTGGACTGAAAGGAGACAAGGGTGGCTTTGGCCCTCCAGGTTTTCCAGGGCCTGTCGGCCTGCCAGGCCTGGGCATTCAGGGGGAGAAGGGTATAGAGGGGCCACGGGGGCCACCAGGGGGCAGGGGCCCACAAGGAGATGGATATCCAGGGCCCAAGGGTGACCAGGGCTTACCAGGGGAGCTTGGttcaacaggagagaggggggctgGCGAACCTGGGGATAAGGGTGAGCCAGGAGCGTCAGGATTGGCTGGTTTTCCTGGCCTCCCAGGAGAGGATGGGGCCCCGGGACAGAAGGGTGAACCAGGTGTTGGTGGTCTGAGGGGACCAGAGGGAGCTGCGGGGATTGGCACCCAGGGTGAGAAGGGAGACCAGGGCCAGAGGGGCATTCGGGGCTTGGGTGGGCCTCCTGGAATCGCCGGGCCCTCTGGAGCAAAGGGGGAGCCTGGGACACCAGGTCGACTGGGTATGCCAGGACTTCCAGGGCGGGGAATCATAGGACCTAAGGGCAATCTTGGCCCACCTGGTCCATCTGGACCAATAGGAGAGACGGGCTACGGGCTGCCTGGTCCTAAGGGTGATCGTGGAGGTCCTGGTCCGTCTGGTCCATTTGGGCCCAAAGGTGATGGTTATCCTGGCCCTACGGGAACACCTGGTCTACCGGGGCTTCCTGGTGAACCAGGCCTGGAGGGGCTGGGCATCCCTGGACCGAAGGGCGATATTGGCTTCAGGGGCTTTCCAGGTTTAGCAGGCCCCCCAGGCGAGGGGCTACAAGGTCTACCGGGTGGCATTGGACGACTGGGCCCCCCAGGGCCAACGGGGCCCCCTGGGCAGGGTATTCAGGGGCCAAAGGGCGAGGCAGGGTCTCAGGGCGTGACGGGCCCTCGGGGGCCACCAGGGGAAGGATTCACAGGGGCCAAGGGTGACCGCGGCTCTGGAGGGGAGAGGGGCCTGAAGGGGGTCAAAGGTGATTTGGGTGACCCTGGAGTTCCTGGCCAATCAGGCAGACCAGGGTTCAAAGGTGACATGGGCCTCACAAGAGAAGACATCATTAAAATGATCAAGGAGATTTGTGGTTGCGGAATCAAATGCAAGGAGCGGCCCATGGAGCTGGTGTTCGTCATTGACAGCTCGGAGAGCGTGGGGCCGGAGAACTTTGAGATCATCAAGGACTTTGTGGCGGCCCTGGTGGACCGTGTGACGGTGGGCCGCAACGCCACCCGCATAGGCCTGGTCCTCTACAGCCTGGAGGTCAAGCTAGAGTTCAACCTGGTGCGCCACATGACCAAGCAGGAAGTCAAACAGGCCATACGAAAAATCCATTATATAGGTGAGGGCACCCACACAGGCACCGCCATCCGCAAGGCCACCCAGGAGGCCTTCTACAGCTCTCGCAAAGGGGTGAGTAAAGTGGCTATAGTTAttacagacggacagacggataAGCGGGAGCCGGTGAAGCTGGATATTGCGGTGCGGGAGGCGCACGCAGCCAACATCGAGATGTACGCATTGGGGATCGTGAATACGTCAGACCCCACGCAGCCCGAGTTCCTGAGGGAGCTCAACCTGATCGCGTCGGACCCTGATAGTGAACACATGTACCTCATTGATGACTTCAACACGCTGCCAGctctggaGTCCAAGCTCGTCAGCAAGTTCTGTGAAGACGAGAACGGTGGTCTGGTATACAACGGCTACGGCAACAATGGACACAGGAACGGGAACAATGGGAACTATGGCAACGGGGGCAATGGCTATGGAATCACCAATCAGGAGGACTTCAACAACAGGAGGCGGACAGTCACCACTACCGGCACTCAAAGTCAGGGTGGCAGCGTAGACCTGACCCAGCCTATCAACCCTGGCACTGCCACAGTACAGATAGGGCAGCGTGAGGGAGGCCAGGATGGAGGTATTTACACCCAGGATTGGGGGACTGGTCGCGGGGACGTTCCCACGTTGAACCGcaacacatcctcctcctccagggATTCCTCATCTTCCAATACAGGAGggtcctcttcctcatcatcatcagGAACGTCATCTTCATCCTCAGGGTCCTCAGGCTCTGTCCAGTTAGTGCCTGCATCACGACCCGCACTTCCCAAAGAGTTTGTGCCTCTGGACCCTCGCTGTGCACTGGTCCTAGACCAGGGCCCCTGCCGGGACTACAAAATGCGCTGGTACTACGACAAGCAGGCCAACGCATGCGCCCAGTTCTGGTACGGAGCCTGTGAGGGGAACCAGAACCGCTTCGACACAGAGGAGGAGTGTAAGAGGACATGCGTGCAAGGCAGAGCAGGCTGAGAAGACATCTCACTCAATTCAGTCTTTAAACCGATGTTCCATGGCACCATGTACTTCACGATGGAAGGAGGTCAAGTCATGACAGTATGTTGTACTATTGGATAAATGCTTGTTTGACACtccctagtcccccccccccaccctaccCTTGAACTAAAACTCTACGCACTTATTATAAATATTCATATACTAATTCCAGTGTCTGATTTGAACTTTAATTTTACCGCCAATCTCTGTAAAATGTTtcattaaaggtccaatgcagccgtttttatctcaatatcaaatcatttctggatgacaattaagtaccttactgtggtttggaactctttcttattggtctattaactaatttaccacctggtgatttcaccatggaaggccaaaactccatcccaccaaaacaggctgaaatttcaggcactCTTTCAAACAACTCTTACACTAAAGGGGCATTATCaatattttcacaatttcacagtaatCCTTCAGCCTCATAATGTGGAaacatatataaaacacaggcaaatctagtttttgactgcactgggcctttaatttaACATTACCATTTTCATTCAAAATGAATGGATAGCTCATCATATAACATCATTTTATCACACAATTCAGTCAATCTCACTCAGGTATGTAGTCAAGAAATAGTAGAAAATACCACTTAGTATTAGACACTGATTCattaatacatacagttgaaattggaagttAACATGCACCTTACCAAATACATTTGACCAAATTCAAATacttttttcacaattccagttttTCACATTTACTCCTAGAAGGTctgaggtcagttaggatcaccactttttattttaagaatgtgaaatgtcagaataatagtatagagaattatttatttcagcttttatttctttcatcacattcccagtggatcagaagtttatata

Function

NR:

description
collagen alpha-1(XXVIII) chain-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036952237.1 False 4032 mRNA 0.54 34 20259167 20286164
XM_036952236.1 True 4916 mRNA 0.54 36 20259167 20290820

Neighbor

gene id symbol gene type direction distance location
LOC110495786 LOC106574549 coding downstream 3947 20251274 ~ 20255220 (-)
LOC110495785 LOC106574553 coding downstream 10834 20239912 ~ 20248333 (-)
LOC110495781 LOC106574547 coding downstream 66989 20178601 ~ 20192178 (-)
LOC110495778 LOC106575314 coding downstream 118325 20113306 ~ 20140842 (-)
LOC110497091 LOC106574544 coding downstream 201016 20050440 ~ 20058151 (-)
LOC110495789 LOC106574554 coding upstream 13867 20304687 ~ 20309450 (-)
LOC110495790 LOC106574555 coding upstream 60668 20351488 ~ 20462793 (-)
LOC110495793 LOC106575303 coding upstream 177362 20468182 ~ 20523875 (-)
LOC110497093 LOC106574562 coding upstream 267737 20558557 ~ 20595753 (-)
LOC110495796 LOC106575332 coding upstream 325914 20616734 ~ 20620719 (-)
G1525057 NA non-coding downstream 8513 20250407 ~ 20250654 (-)
G1525022 NA non-coding downstream 63153 20195809 ~ 20196014 (-)
G1525012 NA non-coding downstream 91296 20167646 ~ 20167871 (-)
G1524985 LOC106574545 non-coding downstream 154771 20103303 ~ 20104396 (-)
G1525035 LOC101478692 non-coding upstream 9736 20300556 ~ 20301395 (-)
G1525105 NA non-coding upstream 236898 20527718 ~ 20528164 (-)
G1525107 NA non-coding upstream 240205 20531025 ~ 20531299 (-)
G1525132 NA non-coding upstream 263103 20553923 ~ 20554810 (-)
G1525152 NA non-coding upstream 324966 20615786 ~ 20616039 (-)
G1524755 LOC106581475 other downstream 529099 19722745 ~ 19730068 (-)
LOC110495764 LOC106574529 other downstream 682067 19573628 ~ 19577133 (-)
G1524473 LOC106574589 other downstream 1095041 19143985 ~ 19164126 (-)
G1524311 NA other downstream 1509772 18749125 ~ 18749395 (-)
G1523241 NA other downstream 1691920 18561906 ~ 18567247 (-)
G1527230 NA other upstream 1971236 22262056 ~ 22262462 (-)
G1528018 NA other upstream 2581225 22872045 ~ 22885833 (-)
LOC110495841 LOC106574435 other upstream 2868738 23008547 ~ 23168591 (-)
LOC110495851 LOC106574449 other upstream 3190720 23479558 ~ 23541681 (-)

Expression


Co-expression Network