LOC110495789 (LOC106574554)


Basic Information

Item Value
gene id LOC110495789
gene name LOC106574554
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 20304687 ~ 20309450 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571218.2
ATAACTTGGCTCCGATTGGTCAGAACTAGACATGTGACGTCCTTGTGCAGAGTCCTTGTGCAGAGTTTGGTCTTGAGTATTTTATGAAAATTGTTACTTTTGTTGCGCTGGCGTGGAACATTTCCGACTGACATGTTTCTGTACCTCCTTGGACTGGTGGTGTTTTACTACCTGTACCGCTGGTTCCGGGAGATCCCAAGAGTCCCAGGCAAAGGAGACAAATATGTCTACATCACGGGGTGTGACTCTGGTTTCGGCAACCTACTGGCCAGACATCTGGACGAGCTGGGTTTCTGTGTGATCGCATCCTGCTtcacagagaagggagaggaagatcTGAGGAAGGCCTGTTCAGGCAGATTCACCACCCTCCACCTGGATGTCAAAAAGAACGAGAGCGTCGACAAAGCAGCTGCTTTGATTAAAGACAAAGTTGGGGCTAGGGGTCTGTGGGCTGTGGTGAACAACGCAGGCGTGGCCATGCCCTCGGCCCCATGTGATTGGCTGACCATTGATGACTACAAGTCCATGCTGGACGTGAACCTGAACGGGGTCATCGCAGTCACCCTGAGTGTGCTGCCCCTCATCAAGAAGGCCAGGGGTCGCGTGGTCAACGTAGCCAGTGTGTTTGGCAGGATCAGTCCAGGTGGAGGACCTTACACTGTGTCTAAGTTTGGAGTGGAGGCCTTCAATGACAGTCTCAGGAGAAACATGGTACCTTTCGGAGTCAAAGTCCTCTGCATTGAGCCAGGCTTTTTCAAGACCACCATGACCGACTGGATAGTCCTGGGGAAAAGCTTCAAGCAGCTGTGGGAGAAGATGCCACAAGAAGTCAGAGATGATTATGGACATGATTATTTGGACAAGGTGGAGGTGAGGATGAGGGAGAAGCTTGACAAGATGTCCGACGCCGACCTGATGAAGGTGGTGAGCTGTATGGAGCACGCTGTCGCTGCAGTCCGTCCTCGCACCCGTTACTCGCCAGGGTGGGACGCCAAGTTCTTCTGGATCCCTATGTCCTACATGCCAACCAGGTTCGCTGACTGGCTACTGCTAAAGAAAGCCATCATTCCAGCCAAGGCTGTCTACTAAGGCTGACGTAAGATTGCCAGTGTTTATATGCTGTCAGAACAAATGCTTGATTGTGCTGTGCTACTGCTTGTCTTTAATGTATAAAACACTTTTTGTATCCTACGGTGTGCAGGCCGAAATACAGTCTGATGTAAGCTTTGCTACAGACATGGTTTAATCTCTGACAAAAAAATAAATTCCATAATTGCTATTTGGTA

Function

NR:

description
retinol dehydrogenase 7-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K13369 HSD17B6; 17beta-estradiol 17-dehydrogenase / all-trans-retinol dehydrogenase (NAD+) / 3alpha(17beta)-hydroxysteroid dehydrogenase (NAD+)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571218.2 True 1289 mRNA 0.50 5 20304687 20309450

Neighbor

gene id symbol gene type direction distance location
LOC110495787 LOC106574546 coding downstream 13867 20259167 ~ 20290820 (-)
LOC110495786 LOC106574549 coding downstream 49467 20251274 ~ 20255220 (-)
LOC110495785 LOC106574553 coding downstream 56354 20239912 ~ 20248333 (-)
LOC110495781 LOC106574547 coding downstream 112509 20178601 ~ 20192178 (-)
LOC110495778 LOC106575314 coding downstream 163845 20113306 ~ 20140842 (-)
LOC110495790 LOC106574555 coding upstream 42038 20351488 ~ 20462793 (-)
LOC110495793 LOC106575303 coding upstream 158732 20468182 ~ 20523875 (-)
LOC110497093 LOC106574562 coding upstream 249107 20558557 ~ 20595753 (-)
LOC110495796 LOC106575332 coding upstream 307284 20616734 ~ 20620719 (-)
LOC118941121 NA coding upstream 477623 20787073 ~ 20835521 (-)
G1525035 LOC101478692 non-coding downstream 3292 20300556 ~ 20301395 (-)
G1525060 NA non-coding downstream 36952 20267247 ~ 20267735 (-)
G1525059 NA non-coding downstream 38232 20266167 ~ 20266455 (-)
G1525057 NA non-coding downstream 54033 20250407 ~ 20250654 (-)
G1525022 NA non-coding downstream 108673 20195809 ~ 20196014 (-)
G1525105 NA non-coding upstream 218268 20527718 ~ 20528164 (-)
G1525107 NA non-coding upstream 221575 20531025 ~ 20531299 (-)
G1525132 NA non-coding upstream 244473 20553923 ~ 20554810 (-)
G1525152 NA non-coding upstream 306336 20615786 ~ 20616039 (-)
G1525195 NA non-coding upstream 340732 20650182 ~ 20650404 (-)
G1524755 LOC106581475 other downstream 574619 19722745 ~ 19730068 (-)
LOC110495764 LOC106574529 other downstream 727587 19573628 ~ 19577133 (-)
G1524473 LOC106574589 other downstream 1140561 19143985 ~ 19164126 (-)
G1524311 NA other downstream 1555292 18749125 ~ 18749395 (-)
G1523241 NA other downstream 1737440 18561906 ~ 18567247 (-)
G1527230 NA other upstream 1952606 22262056 ~ 22262462 (-)
G1528018 NA other upstream 2562595 22872045 ~ 22885833 (-)
LOC110495841 LOC106574435 other upstream 2850108 23008547 ~ 23168591 (-)
LOC110495851 LOC106574449 other upstream 3172090 23479558 ~ 23541681 (-)

Expression


Co-expression Network