LOC110495791 (LOC106575306)


Basic Information

Item Value
gene id LOC110495791
gene name LOC106575306
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 20312098 ~ 20328610 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110495791
ATGATGCTGGGGGGTAGTGTGTGTGCCTTCCTCCACGGTTCCGCTAAGCCTCTCATGCTGCTGGTGTTCGGGATGCTCACCGACACCTTCATCGAGTACGACATCGAGTTACAGGAGCTCCTGAACCCCAGGAAGGAACGTATCAACAACACCATACAGTGGAAGAACCAGTCAGTATGGACAGACTGGCTGGACAGCACCAAGACTGATAAGATGAAGAATTTAACATGCGGGCTTCTGGACATTGAGTATGAGATGACCAATTTTGCCTACTTTTACGTTGCCATCGGATGCGCAGTTTTCCTGCTAGGATACCTTCAAATCACGTTGTGGGTGACGTCTGCAGCGCGACAGATCCAGATCATCAGAAAGATGTACTTCAGGAAGGTGATGAGGATGGAGATTGGCTGGTTCAACTGCACCTCGACTGGAGAGTTAAACACACACATGTCAGACGACATCAACAAGATCAATGACGCCATGGCGGATCAAGTGAGCATCTTTATCCAGCGCTTCACCACCTTCATGTGTGGTTTTGCGATTGGCTTTGTGAAGGGATGGAAGTTAACGCTCATCATCACCGCAGCCAGCCCTCTCATTGGAATAGGCGCCGCCCTCATGGCTCTGTTTGTGGCCAAGCTAACAGGTCAGGAGCTGCTGGCCTATGCTAAGGCTTGAGACGTAGCCGACGAGGTGCTCACCTCCATCAGAACAGTGGCCTCTTTCAGAGGAGAGCTAAAGGAAGTGGAGAGgtatGGCAAGAACCTGATCTCAGCTCAGCGTTGGGGCATCAGGAAGGGCCTGATCATGGGCTTCTTCCCAGGCTACATGTGGTTTATCATCTTCCTGTGTTACGCCCTGGCCTTTTGGTACGGATCCAGCCCAGTGGTGGACACACAAGAGTACAGCCCGGAACACTGTTACAGGTTTTGATTGGTGTGCTGATAGCAGCCCTGAACTTAGGGCAGGCATCTCCATGTCTGGAGGCATTTGCtgcaggaagaggagctgctaccATCATCTTTGAGACCATCGACAGGGGGCCGGACATCGACTGCCTCTCAGAAGCAGGGTACAGACTGGACAAGGTCAAAGGGGACATTGAGTTCTATAACGTCACCTTTTCACTACCCATCCAGACCTGAAGTCGTGATCCTGGACCAGCTGAGTGTAGCAGTGAATTCTGACGAGACGACCACCTTTGTGGGGCCCAGTGGAGCGGGGAAGAGTACTGCCGTGCAGCTCATCCAACGATTCTACGACCCGAAGGAGGGCATGGTGACCTTGGATGTCCATGACATCAGAGGCCTGAACATCCAATGGCTACGTTCGTTGATGGGCATCGTGGAGCAGGAGCCCGTGCTGTTCGCCACAACCATCGGCGAGAATATCCGCTACGGTCACCCCGGAGTCACCCTGGATGACATCATCCATGCCACCAAAGAGGCTAATGCCTACAACGTTATATTAGGCCTACCACAGAAATTTGACACGCTGGTGGGAGAGGGCAGAGGTCAGATGAGCAGCGGTCAGAAGCAGCGTATCGCCATCGCCCGGGCCCTGGTCAGGAACCCCCGGATCCTACTGCTGGACATGGCCACCTCCACTCTGGACAATGAGAGTGAGGCTGTGGTACAGGAGGCTCTGGACAAAGTACGCAATGGCCGCACCACCATCTCCATAGCCCATCGTCTGTCCACCATTAAGAACGCGGACGTGATCGTGGGCTACGAGCATGGGCGGGCGGTGGAGAGGGGGCAAGGGGAGAGCAAGCTGGAGAGGAATGGTGTTTACTTCACTCTGGTCACCCTACAAAGCCAAGGAGACAAGGCTCTCAACTGGAaggccagacagATTGCGGGCAACGACGAACCAGAGCAGAAGAATCTATCCAGGGAGATGGAGATGTTGTGCACTGACATGTTCAGAGCCTCTATCAGGAAGAGGACCTGCTCACAGCTGTCCAACCTCATTCCAGAAGCAGAATCCTTTGTATCTCAGGCAGACGCGGgcaagAGTGCCTTtgtagaggaggtggaggagcatGTTGAGCCTGCTCCAGTGACCAGGATCCTGAAGTACAATGCCCCTGAATGGCCCTACATGCTGTTTGGAACCATCGGAGCTGCTGTCAAAGGAGGAGTCAACCCAGTGTACTCCCTGCTCTTCAGTCAGATTCTGGGGACATTCTCCATACCAGACCCAGAGGCTCAGAGGAGGGAGATCAATGGTATCTGCATGTTCTTTGTGCTGGTCGGAGTGACCTCCTTCATCACCCATTTGCTCCAAGGCTATGACTTCTCTAAGTCTGGGGAGCTGCTGACAAGGCACTTGAGGAGGATGAGTTTCCACGCCATGTTGGGTCAGGAGGTGGGCTGGTTTGATGACCACAGGAACAGCCCTGGGGCTTTGACCACACAGGTCCAAGGGGCCACGGGCTCTCAGATCGGCATGATCGTTAACTCTCTGACCAACATTGGCGTGGCCGTCATCATTTCCTTCTATTTCAGCTGGAAGCTCAGCGTGGTCATCATGTGCTTCCTGCCCTCCCTGGCTCTTTCCGGATGCTTCCAGGCTAAGATGCTCACTGGCTTTGCCAAGCAGGACAAACAGGCCATGGAGGATGCAAGTCGGATCTCTGGCGAGGCCCTGAACAACATCCGCACCATCACCTTTGTTAACTGGGGAAGGAACAGAGCTTTGTGGAGATGTACGAGGCTCACCTGGAGGTTCCGTACCAGGCCGCCAAGCAGAAGGCCAACGTGTACAGCGCCTGCTACGGCTTCGTCCATTGTGTTGTCTTCATGTCCAACAGCGCCTCCTACAGGTTTGGAGGGTACCTGGTGCGCCAGGAGGGCCTCCACTACAGCCTGGTCTTCAGAGTGAACTCAGCCATAGTGACAAGTGGCACAGCGCTGGGCCGAGCCTCTTCCTACACCCCCAGACTACGCCGAGGCCAAGATCTCAGCTGCCCGCTTCTTCCAGCTCCTCGACTGCGTGCCAAAGATCAGCGTCTACAGCAACGAGGGGGACAAATGGtCTGATTTCAGCGGGAACTTAAGAGTTCATTGACTGTAAGTTCACGTAACCGACCCGGCCAGACATCCAGGTGCTGAACGGCCTCAACGTGTCGGTAAAGCCCGGCCAGACGCTGGCCTTTGTGGGCAGCAGTGGCTGTGGGAAGAGCACCAGCGTCCAGCTACTGGAGAGATTCTATGACCCCGACCAGGGCAAAGTGATTATTGATGGCCATGACTCGACTCAGGTCAACGTCTCGTACCTGCGCTCCAAGATCGGCATCGTATCCTAGGAGCCCATTCTGTTTGACTGCAGCATCGGAGACAACATCAAGTACGGAGACAACCTGCGCGAAGTCAGCCTGAATGACATCATCTCCGCATCCAAGAAAGCCCAACTCCACGACTTTGTCATGACGTTACCTGAGAAATATGACACCAACGTGGGTTCCAGGGCTCCCAGCTCTCTCGGAGACAGAAGCAGCGCATAGCAATCGCCAGGGGGATTATCCGCGACCCTAAGATCCTGCTACTGGACGAATCCACTTCAGCCCtggacacagagagcgagaaggTAATGTCTCCATGACAACCGCCTGTCATCATCACGAGCAGTAGAAGAAGTCCTGAACCTGATGAGGATAGACTGAAATTTATACAGATAGCTTTATTACAGATAGCTATTTCAAATGGCTTTAGAATTGGTACGAGGCAAGGCAAGCATGCAATTTGCCTGTGCCTTAGGTCCATTGTATGAGGCAGAGGTAGTAATCAAGTAATCATGGTGAGTCATGGGTGATTGTGAAATCAGCTcaaagctttgtgtgtgtgtgtgcgcgcgctacAGACAGTGCAAGAGGCGCTGGATAATGCGAGGGAGGGCCGAACCTGCACCGTGTTCGCCCACAGTCTCTCCACCATCCAGAACTCTGACATCATCGCCGTTATGTCCAGGGTCCACATGACCATCTCATAGCCCTCAAAGGGGCCTATTACAAACGTGTCACCACCGGTGCATCAATCAGCTAACTCCACAGGGTTATAGGAGCCAAACCAGGAAATGTCTGTTCAGGTCATCATGCCGGGTCATTTAGTATTTATTCTGCAGAAGGGATCCTGTCAACCGTCACACATTCTTCAGTGTTAATTGGCCATGTGTATTCATTTGTTGTCGTTACATGTAAACAGTATGTCTGAGAATACTGTAGGTCTGAGTGGCAACCTTTAATCtttgagtttttattttttttgcaattaACTGTATTGCATAAGAATAAAATGAATCCAAAATCTACATTGAGGGTATAAAGTAACTGTTTACAATTGTCGACCGTTTGTACTGTGTTTACTATTATACATTTACGattgaatttttttatttatttttaatggaACCTTTTTATTCTTAAATCAAATATGGTGCATTTAAATTGCCTGCAGACGATAATACATTCATTTACAGTTGATTTTCCTAAGTCAAAGGTTAAGATAACAGACTCATTGAAGAGCCTGGGACAGACTAGTACTACAGACTAGTACTACAGTATTCCCTACACCAGGTCTTGTTGATACTTCCATGACTGACACCGTGACACCGTGACCTGA
>TU1745139
GTGCAAAGAGGAGATAAGTAGTTTTTTATTGGATTTGGGAAACAACAAGTTGGTATGTATCTCAGTGATAATACAATACATTTCAAATGGGATGTATTTTGGCTTTGTAATTcatttttattatatatttttcctCTTATAAATGTATTGTAGACAGTCCAGGATGCCTGCTGGATCAGTGAAATTACAGAGCATCAAAAAGCTGGGAGAAGAAAACAATTGTTTTGATGAAGGTACACCTGCATAAATATGATTATGTTCAATGCATCATTTTGATGTCACTTTCCTGACATAAACAGTGCTATCaaaaagtaagtaagtaagtatctCTTTATTACAGAACCTAACAACGCATTCATGTAAGTGCATCTTCCTcagataaaaaacaacaacacttgtCATGACTTATATTCTGTGTGATTTGAGTTCTGGTTGGTAAAATGTATAAATCAaactatttatttattatttatttaactaggcaagtcagttaagaacaaattcttatttacaatgaaggcctactccggccaaacccggacgatgctgtgccaattgtgcatcaccctatgggattcccaatcacagccggttgtgatacagcctggaattgaaccagggtctgtagtgacacctctagcactgagatgcagtcggGAGCCCATTTCTTATCATGTTTCTCAGAATTGTGACATGTAAAAACAAGGTCACATTTAATAGCATGTTCTTTTTTTCCTCCGCTGCAGGACGATGGGGAACCTGGAACAGAACACAGAGTAAGTCCATCTTCACCCCCTACATTATTCCCACTCATGTCCTTTAGGCTTTGACTAATTTCTCTGTGATTGTCCCAGGTCTCCAAACAAGAAGAAGGAAGCTGCTATTAGGATTGGCTTCTTTCAGCTGtTCCGTTTCGCCACATGCCGGGAGACCCTGATGATGCTGGGGGGTAGTGTGTGTGCCTTCCTCCACGGTTCCGCTAAGCCTCTCATGCTGCTGGTGTTCGGGATGCTCACCGACACCTTCATCGAGTACGACATCGAGTTACAGGAGCTCCTGAACCCCAGGAAGGAACGTATCAACAACACCATACAGTGGAAGAACCAGTCAGTATGGACAGACTGGCTGGACAGCACCAAGACTGATAAGATGAAGAATTTAACATGCGGGTAAGTCCTATTCGTTGCTGCACAGAAGAGTAGAACTTTGCTACACATGGAATTTCTATATCAAGGATTGAGGATAGAaagatatattttatattttaacctACATCTGTATGACATTCATTCTCAGGCTTCTGGACATTGAGTATGAGATGACCAATTTTGCCTACTTTTACGTTGCCATCGGATGCGCAGTTTTCCTGCTAGGATACCTTCAAATCACGTTGTGGGTGACGTCTGCAGCGCGACAGATCCAGATCATCAGAAAGATGTACTTCAGGAAGGTGATGAGGATGGAGATTGGCTGGTTCAACTGCACCTCGACTGGAGAGTTAAACACACACATGTCAGAGTAAGAGAAAAACACAGACCAAAATTCCACTTTTAGGTTTTAAGAGAAAAAGTTCTGGGAAAGTTTTGCATTTATTGTCATGTTTAGGaccagtacagatgtaggatcttaatttgatcactcttttgttgctgagaattttcctacACAGCAggtagtgtagtgtatttgagttttaaaacaAACTGTTAGGGAAATTCTGCAGTTCTATAAAGTATAAAGGTACTCAGATCCAATCATTTTGGTTGGgatttgaaatttcagactttatttgccctaacaaaacctgtatcaacccctacaaaaatgtccattaattaa

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110495791 False 4622 mRNA 0.52 24 20313537 20328610
TU1745139 True 1839 lncRNA 0.40 3 20312098 20314534

Neighbor

gene id symbol gene type direction distance location
LOC110495788 LOC106574550 coding upstream 11437 20296017 ~ 20302100 (+)
LOC110497092 NA coding upstream 67649 20244354 ~ 20245888 (+)
LOC110495784 LOC106574551 coding upstream 76784 20206484 ~ 20236753 (+)
si:busm1-52i16.2 LOC106574552 coding upstream 143192 20167233 ~ 20170345 (+)
LOC110495779 LOC106575341 coding upstream 149073 20162785 ~ 20164464 (+)
LOC110495794 LOC106574560 coding downstream 199069 20527679 ~ 20552117 (+)
LOC110495795 LOC106574563 coding downstream 276276 20604886 ~ 20614129 (+)
LOC110495797 LOC106574564 coding downstream 334801 20663411 ~ 20696331 (+)
LOC110495798 LOC106575297 coding downstream 457459 20786069 ~ 20855643 (+)
LOC110497094 LOC106575296 coding downstream 543890 20872500 ~ 20885233 (+)
G1524125 NA non-coding upstream 4584 20308487 ~ 20308953 (+)
G1524124 LOC106574554 non-coding upstream 7174 20305705 ~ 20306904 (+)
G1524122 NA non-coding upstream 9070 20304224 ~ 20304467 (+)
G1524117 NA non-coding upstream 22711 20290510 ~ 20290826 (+)
G1524115 LOC106574546 non-coding upstream 24749 20288225 ~ 20288788 (+)
G1524105 NA non-coding downstream 3214 20331824 ~ 20333289 (+)
G1524129 NA non-coding downstream 10904 20339514 ~ 20339810 (+)
G1524130 NA non-coding downstream 11271 20339881 ~ 20340281 (+)
G1524131 NA non-coding downstream 11743 20340353 ~ 20340612 (+)
G1524134 NA non-coding downstream 15582 20344192 ~ 20344486 (+)
LOC110495776 LOC106574545 other upstream 237225 20065965 ~ 20110618 (+)
LOC110495777 LOC106574545 other upstream 279892 19992559 ~ 20049054 (+)
LOC110495771 LOC106574539 other upstream 413518 19897030 ~ 19900020 (+)
G1524181 LOC106574559 other downstream 144750 20473360 ~ 20483713 (+)
G1525320 NA other downstream 428081 20756691 ~ 20757412 (+)
LOC110497098 LOC106574424 other downstream 2270803 22599016 ~ 22641368 (+)
G1528194 NA other downstream 2830223 23158833 ~ 23161291 (+)
LOC110495887 LOC108430494 other downstream 4192125 24520697 ~ 24525649 (+)

Expression


Co-expression Network