LOC110495790 (LOC106574555)


Basic Information

Item Value
gene id LOC110495790
gene name LOC106574555
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 20351488 ~ 20462793 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036952239.1
TGATGTTTGTCCAAATGAGAAGCAGGAGACTGGGATGCGAGTCCAATAGAGATGCAGGAGACTGGGATGCGAGTCCAATAGAGATGCAGGAGACTGGGATGCGAGTCCAATAGAGAAGCAGGAGACTGGGATGTGAGTCCAATAGAGAAGCAGGAGACTGGGATGCGAGTCCAATAGAGAAGCAGGAGACTGGGATGCGAGTCCAATAGAGAAGCAGGAGACTGGGATGCGAGTCCAATAGAGAAGCAGGAGACTGGGATGCGAGTCCAATAGAGAAGCAGGAGACTGGGATGCGAGTCCAATAGAGAAGCAGGAGACTGGGATGTGGGTCCAATAGAGAAGTGAAGAGAATGAAAAGGGCTTTGACTAACAGCAGTGAGAGGTTTGTCATGAGGAGCAGGAGAACATCGAGAGATGGAGTGAAGAGGAAAGAGCCTAACGTTAAGGGCAGGACCCAGCTGTGTGAGAATCAAGTGCTGGCGAGAAGAATGCAAGGGAACACCCCTAATGGAATGGAATAGTTCAATGTCTGCATTGAGGAAAAACGACAACCCTCCTTTTCAACCAGAATCCCACCACTAGGCTGTATTAAAGCAGTCGAGGGTACTGAATTAATGTCAAGCATCtcgtggaggcagcatcatgctgcacCGATGGAAGTAGCTGGAGGACCACCCATGGAGATTCCACCTTCTTGACATTCTCAATGCTCCTAACACGTGCCAAGTAAACAGAAATGCCTTCAAAGGTCAGCTGCTTATACTTGTTGACGGTCGTTTGCTGGGCTAGCGCTCTCTGGTACCTGAGTCTGTCCCGTCCCTCCACCTCCTACGTGGGCCAGCTGTCCATCCCCATCCGCCAGAAGACCAAGCTCACCAAGAACGTGACCTTCAGCAATATACGGACTCGGCCGCTCAACCCACACTCCTTCGACTTTGTCATCAACGAGCCCAAGAAGTGTGAGACGGAGGCACCTTTCTTAGTCATTCTGATCAGCACCACCCACAAGGAGTTTGATGCACGTCAAGCGATTCGAGAGACGTGGGGCGACGAGAGCACGTTCGGCGATGGCGTTCGCGTCCTCACACTCTTCCTGCTTGGGAGGAACACGGATCCGGTGCTCAACCAGATGGTGGAACAGGAGAGCCAGATCTTCCACGATGTCGTGGTGGAGGACTTCATAGACTCCTACCACAACCTCACCCTCAAGACCCTGATGGGCATGCGCTGGGTGGCCACCTTCTGCCCCAAGGCACAGTACGTCCTCAAGACGGACTCGGACATCTATGTTAACATGGAGAACCTGGTCTACAACCTCCTCAAGCCCGCCTCCAAGCCGCGGAGACGCTACTTCACGGGCTACGTCATCAACGGAGGTCCGATCAGAGACATGCGCAGTAAGTGGTACATGCCCAGAGACCTTTACCCTGAGGCTAAGTACCCGCCTTTCTGTTCGGGCACGGGGTACGTGTTCTCGGCGGATGTGGCCGAGCTCATCTACAAGACGTCCCTGCACACCAGACTGCTCCACCTGGAGGATGTGTACGTGGGGCTGTGCCTTCGTAAACTGGGCATCCACCCCTTCCAGAACAGTGGCTTCAACCACTGGAAGATGGCCTACAGTCTGTGCCGCTACCGACGGGTCGTAACGGTCCACCAGATCTCCCCGGAGGAGATGCACCGCATCTGGAATGACATGACCAGCAAGAAACACCTCAAGTGTTAATCAGCTACCTACATTTAGTGCCAAGAggtccttcttcttcttcttcttctttattgcttcttctcttcctcctcctctgcctcttccacCTCTTCCTATTTCTGCTTTTCTTTGTCACTGTACAGCACATGACCCTGAGGGAACAGTACTGTAACAATAACCGTCTGGCCGTTTGCATAGTCCAAGAGACGCTTCGCTAAAAGCCTCTTTATCAGACCAAGGTTTCTCTCTGCTGTTGTTACTCCTGCATTCTCCCCCTATTGATGAGTTTAAAGGCCACAGTTTAGAAAATCAAATAATTCTGTATATTTTCTGAAATATGTTTGATTAAAAAAATCCACTCTATGAAAATCAAATAATGTCCCACAATGCAACAGTATGCCATTTGCACCATATGTTGTTTATGAGATGAAATCACTAAAACACAGAGGTAGAAGCTTAGCAGTGGGACAAAATGGCTCGGATGCTATTAGGCTAATCTATGTAGGCAATGCTGTTAATTTCCAGAAAAACTGGCCCTATTACTGTAGTAGTAGGGATGATAAGAAATACCAAGATATACAACCTATGTAAACGTTCTGCTGTCAGTTAGGTTGATAATGAATGTCCACTCTTAATTTCCAGTCTTTGCATATTTAATAAAGATGTATTTGTGGGATGTACTGTTTTGGTACCGCAACAGATGTTGTCATAGTGAAAAGACCATGATAAGTATACAATGTAACAACGTGCTGTCGACATAGATTGAGTGTTCATTGATTGGAATGATCTAAGATTGTTAGAACAGGAGACTAACAGTTCACTGGACCTACTGTGTGACACGACGGACACACTTGCCTCTGCAATTGCGTtgtaatatactgttttaaagaTCAAACCTATTTTCTTACTATGTATTTGGAGTCCTTTGTATTGTACTAGGTAGAGAATGGCTTCATTTCTTGGACACCCGTATTTCTTATGGGACGGTACAAATGGCCACGTAACGGCATTAACCACATGCATTCCCCGGTGAATGTTATTCTATCTGTATGTGAGGCGCAATTCTTTTCCCCCGCTCTTTAAGCCGCGCGGTGACGAGACAGACGGCAGGGTGTTATATGTTCTATTACTTGAAACCAGAGGGACGACACAACCAACGGCTGCATTACATTAAAGACGTCTTTCATTTGA
>XM_021571219.2
GTCTCCCCCACTGCTTTCTCGCTGTGAGATCAGATGCGGAGCCCAGCGCAGGACGGACAGTTTCAGCACCACTTGTCTTGGTGGGATGTAGACAACGAGACTGAGATGGAGTGAAGAGGAAAGAGCCTAACGTTAAGGGCAGGACCCAGCTGTGTGAGAATCAAGTGCTGGCGAGAAGAATGCAAGGGAACACCCCTAATGGAATGGAATAGTTCAATGTCTGCATTGAGGAAAAACGACAACCCTCCTTTTCAACCAGAATCCCACCACTAGGCTGTATTAAAGCAGTCGAGGGTACTGAATTAATGTCAAGCATCtcgtggaggcagcatcatgctgcacCGATGGAAGTAGCTGGAGGACCACCCATGGAGATTCCACCTTCTTGACATTCTCAATGCTCCTAACACGTGCCAAGTAAACAGAAATGCCTTCAAAGGTCAGCTGCTTATACTTGTTGACGGTCGTTTGCTGGGCTAGCGCTCTCTGGTACCTGAGTCTGTCCCGTCCCTCCACCTCCTACGTGGGCCAGCTGTCCATCCCCATCCGCCAGAAGACCAAGCTCACCAAGAACGTGACCTTCAGCAATATACGGACTCGGCCGCTCAACCCACACTCCTTCGACTTTGTCATCAACGAGCCCAAGAAGTGTGAGACGGAGGCACCTTTCTTAGTCATTCTGATCAGCACCACCCACAAGGAGTTTGATGCACGTCAAGCGATTCGAGAGACGTGGGGCGACGAGAGCACGTTCGGCGATGGCGTTCGCGTCCTCACACTCTTCCTGCTTGGGAGGAACACGGATCCGGTGCTCAACCAGATGGTGGAACAGGAGAGCCAGATCTTCCACGATGTCGTGGTGGAGGACTTCATAGACTCCTACCACAACCTCACCCTCAAGACCCTGATGGGCATGCGCTGGGTGGCCACCTTCTGCCCCAAGGCACAGTACGTCCTCAAGACGGACTCGGACATCTATGTTAACATGGAGAACCTGGTCTACAACCTCCTCAAGCCCGCCTCCAAGCCGCGGAGACGCTACTTCACGGGCTACGTCATCAACGGAGGTCCGATCAGAGACATGCGCAGTAAGTGGTACATGCCCAGAGACCTTTACCCTGAGGCTAAGTACCCGCCTTTCTGTTCGGGCACGGGGTACGTGTTCTCGGCGGATGTGGCCGAGCTCATCTACAAGACGTCCCTGCACACCAGACTGCTCCACCTGGAGGATGTGTACGTGGGGCTGTGCCTTCGTAAACTGGGCATCCACCCCTTCCAGAACAGTGGCTTCAACCACTGGAAGATGGCCTACAGTCTGTGCCGCTACCGACGGGTCGTAACGGTCCACCAGATCTCCCCGGAGGAGATGCACCGCATCTGGAATGACATGACCAGCAAGAAACACCTCAAGTGTTAATCAGCTACCTACATTTAGTGCCAAGAggtccttcttcttcttcttcttctttattgcttcttctcttcctcctcctctgcctcttccacCTCTTCCTATTTCTGCTTTTCTTTGTCACTGTACAGCACATGACCCTGAGGGAACAGTACTGTAACAATAACCGTCTGGCCGTTTGCATAGTCCAAGAGACGCTTCGCTAAAAGCCTCTTTATCAGACCAAGGTTTCTCTCTGCTGTTGTTACTCCTGCATTCTCCCCCTATTGATGAGTTTAAAGGCCACAGTTTAGAAAATCAAATAATTCTGTATATTTTCTGAAATATGTTTGATTAAAAAAATCCACTCTATGAAAATCAAATAATGTCCCACAATGCAACAGTATGCCATTTGCACCATATGTTGTTTATGAGATGAAATCACTAAAACACAGAGGTAGAAGCTTAGCAGTGGGACAAAATGGCTCGGATGCTATTAGGCTAATCTATGTAGGCAATGCTGTTAATTTCCAGAAAAACTGGCCCTATTACTGTAGTAGTAGGGATGATAAGAAATACCAAGATATACAACCTATGTAAACGTTCTGCTGTCAGTTAGGTTGATAATGAATGTCCACTCTTAATTTCCAGTCTTTGCATATTTAATAAAGATGTATTTGTGGGATGTACTGTTTTGGTACCGCAACAGATGTTGTCATAGTGAAAAGACCATGATAAGTATACAATGTAACAACGTGCTGTCGACATAGATTGAGTGTTCATTGATTGGAATGATCTAAGATTGTTAGAACAGGAGACTAACAGTTCACTGGACCTACTGTGTGACACGACGGACACACTTGCCTCTGCAATTGCGTtgtaatatactgttttaaagaTCAAACCTATTTTCTTACTATGTATTTGGAGTCCTTTGTATTGTACTAGGTAGAGAATGGCTTCATTTCTTGGACACCCGTATTTCTTATGGGACGGTACAAATGGCCACGTAACGGCATTAACCACATGCATTCCCCGGTGAATGTTATTCTATCTGTATGTGAGGCGCAATTCTTTTCCCCCGCTCTTTAAGCCGCGCGGTGACGAGACAGACGGCAGGGTGTTATATGTTCTATTACTTGAAACCAGAGGGACGACACAACCAACGGCTGCATTACATTAAAGACGTCTTTCATTTGA

Function

NR:

description
beta-1,3-galactosyltransferase 1-like

GO: NA

KEGG:

id description
K07819 B3GALT1; beta-1,3-galactosyltransferase 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036952239.1 False 2899 mRNA 0.48 3 20351488 20416362
XM_021571219.2 True 2590 mRNA 0.48 3 20351488 20462793

Neighbor

gene id symbol gene type direction distance location
LOC110495789 LOC106574554 coding downstream 42038 20304687 ~ 20309450 (-)
LOC110495787 LOC106574546 coding downstream 60668 20259167 ~ 20290820 (-)
LOC110495786 LOC106574549 coding downstream 96268 20251274 ~ 20255220 (-)
LOC110495785 LOC106574553 coding downstream 103155 20239912 ~ 20248333 (-)
LOC110495781 LOC106574547 coding downstream 159310 20178601 ~ 20192178 (-)
LOC110495793 LOC106575303 coding upstream 5389 20468182 ~ 20523875 (-)
LOC110497093 LOC106574562 coding upstream 95764 20558557 ~ 20595753 (-)
LOC110495796 LOC106575332 coding upstream 153941 20616734 ~ 20620719 (-)
LOC118941121 NA coding upstream 324280 20787073 ~ 20835521 (-)
zgc:92027 gran coding upstream 392631 20855424 ~ 20863001 (-)
G1525035 LOC101478692 non-coding downstream 50093 20300556 ~ 20301395 (-)
G1525060 NA non-coding downstream 83753 20267247 ~ 20267735 (-)
G1525059 NA non-coding downstream 85033 20266167 ~ 20266455 (-)
G1525057 NA non-coding downstream 100834 20250407 ~ 20250654 (-)
G1525022 NA non-coding downstream 155474 20195809 ~ 20196014 (-)
G1525105 NA non-coding upstream 64925 20527718 ~ 20528164 (-)
G1525107 NA non-coding upstream 68232 20531025 ~ 20531299 (-)
G1525132 NA non-coding upstream 91130 20553923 ~ 20554810 (-)
G1525152 NA non-coding upstream 152993 20615786 ~ 20616039 (-)
G1525195 NA non-coding upstream 187389 20650182 ~ 20650404 (-)
G1524755 LOC106581475 other downstream 621420 19722745 ~ 19730068 (-)
LOC110495764 LOC106574529 other downstream 774388 19573628 ~ 19577133 (-)
G1524473 LOC106574589 other downstream 1187362 19143985 ~ 19164126 (-)
G1524311 NA other downstream 1602093 18749125 ~ 18749395 (-)
G1523241 NA other downstream 1784241 18561906 ~ 18567247 (-)
G1527230 NA other upstream 1799263 22262056 ~ 22262462 (-)
G1528018 NA other upstream 2409252 22872045 ~ 22885833 (-)
LOC110495841 LOC106574435 other upstream 2696765 23008547 ~ 23168591 (-)
LOC110495851 LOC106574449 other upstream 3018747 23479558 ~ 23541681 (-)

Expression


Co-expression Network