LOC110495794 (LOC106574560)


Basic Information

Item Value
gene id LOC110495794
gene name LOC106574560
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 20527679 ~ 20552117 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571226.2
TAGTCACGTTGCCTGTAGGGCTCGTGTCAACTCCTTTCTCTCCACCATTGTCAGCGCGCGCAGCCGAAGAATCCTCCACGCGTCCGTCGTGCTGCAAAACCTACTAATTCATTTACGACATAAATCAATTACAGCACCATGTCACTCTGTTATGCTTTTGTGTGAATGGTGCGCAAATATCGTTTCAGCTGCATTGATAATTAGCCTTTCATTTAACAGTTGTCATTTAGGCTACTCATTCGTTTATTTTAGCCAATACGGGACGTCATCTTATACAGTTGCCCGTTTTTTCGTGATGGTTTGACAACATGATTGGCCAGCAACTTCTCATGCCAACAACCTAACTTGATCTCTCAGCATCTAAGggGAAGACGTTGGGTGGTAGACCTACGGCAGGATGAGTGGGATCCTGAAGAGGAAGtttgaggaggtggaggtggacagcccctccccctgcctctctctccaggggTCCGATGACGAGGTCTCTGCCGGCAGCGACAGCGGGAACAGCAGCGACAGCGTCAACCCCGGCCCCTCCACCCCCGTCGCCCCCTCCTCTATCTTGAGGTGTGAGAAGCGCCTGCTGGTGCGCAATGTGCACTTTGAGAGCGTGACGGTGTACTACTTCAGCCGGCGCCAGGGCTTCACCAGTGTGCCCACGCAGGGCGGCAGCACCCTGGGCATGTCCACACGCCACAGCTGGGTGCAGCGCTACACCCTGGGGGAGTTCGCTGTGGAGCAGGAGAGAAGCCACCGAGACATGCTGCGAGACCACCTCAAAGAGGAGAAACTCAACTCCATCAAACTCAAGCTGACCAATAATGGCACTGTGGAGTCGGACGAGGCCGAGTCACTGACCTTGGACGACATCTCAGAGGACGACATCGACCTGGACAACACGGAGGTGGACGAGTACTTCTTCCTGCAGCCGATGACCACCAGGCGGCGCCGCGCTCTCCTCCGGGCGTCTGGGGTGCGACGCATTGACGTGGAGGAGAAGCACGAGCTGCGGGCCATCCGGGTGTCCCGGGAGGAGTGCGGCTGTGACTGCAGGGGGCTGTGCAACCCCGCGACCTGCGCTTGCAGCCTGGCCGGCATCAAGTGCCAGGTAAATGGAGCTGTGGTAGATCGCATGTCATTCCCGTGCGGCTGCAGCAAGGAGGGCTGCAGTAACGGCACAGGCCGTGTCGAGTTCAACCCCATCCGTGTTCGCACCCACTTCCTGCACACCATCATGAAGCTGGAGCTGGAAAAGAGCCACgagcaacaacaaccacaaccacaggtCACCATTGGTTACCACGGAGAACTACCAGTCAACGTCCCTGTCCAGCGTGCTTTGCAGTACCCCCTGATGTCTGACAACATCCCAGTCCCGCAGGCTCCCATCATGCACCTGCTGAGTGCCAGCGATGTGGAGCAGCATCTAGAAGAGGAAGTGGACGAAGATGAGgaagatgatgaggaggaggatgatgacgaTGGTAGTAGTTTATGTAGTGGCCTCTCGGACTGCAGCACCAACAGCCTGCACACTAGtgactctgaggaggaggaggaggaggaagatgactgTGAGTCTATGGAGGAGGGGGTGAGTGGACCCCCAGTCTCTCACACAGAGgtggtccctctctcctctgtgttggGTTACAGTGATGGCACACAGACCAACACCAACCGCGCTAACCCCAACTCATACTACCACAACCCTTCATCAGGGTACTACCATATGGACAACTCAGCCAAGCTGAACCCCACACCACAATCCCCTTGTGAAGCTCCCTCACTCCGCCTCTCACTCCCCAACAGGGAGGGGGCCACCGATGGCCCCACGGTTGTGTCACAGGAGCAGCCTAAAACCACCTCCGAGCCGCACACAGACCACCTCAGCCAGATAGAGGGACTGTATATGCATTTTCCCCACACTGACAAAGCACCAGCAGCCAACGCCTGTTCCTCAGCCCCGCAGCAGAGCAACACTCCCCACAGTGGGGAGACTAGTACACTACACCATGAGCAGCCCTATCAGACACAGGTTAGCGTTTTtaatcatgaatcttgttctagAGGCAACTCTGcggagtggtcactagctggcacggccacaaagtcataaaatcagattttaaacctaaccttaaccctaaacgtaaccacactgctaaccctaatgcct
>XM_021571231.2
AGTCACGTTGCCTGTAGGGCTCGTGTCAACTCCTTTCTCTCCACCATTGTCAGCGCGCGCAGCCGAAGAATCCTCCACGCGTCCGTCGTGCTGCAAAACCTACTAATTCATTTACGACATAAATCAATTACAGCACCATGTCACTCTGTTATGCTTTTGTGTGAATGGTGCGCAAATATCGTTTCAGCTGCATTGATAATTAGCCTTTCATTTAACAGTTGTCATTTAGGCTACTCATTCGTTTATTTTAGCCAATACGGGACGTCATCTTATACAGTTGCCCGTTTTTTCGTGATGGTTTGACAACATGATTGGCCAGCAACTTCTCATGCCAACAACCTAACTTGATCTCTCAGCATCTAAGggGAAGACGTTGGGTGGTAGACCTACGGCAGGATGAGTGGGATCCTGAAGAGGAAGtttgaggaggtggaggtggacagcccctccccctgcctctctctccaggggTCCGATGACGAGGTCTCTGCCGGCAGCGACAGCGGGAACAGCAGCGACAGCGTCAACCCCGGCCCCTCCACCCCCGTCGCCCCCTCCTCTATCTTGAGGTGTGAGAAGCGCCTGCTGGTGCGCAATGTGCACTTTGAGAGCGTGACGGTGTACTACTTCAGCCGGCGCCAGGGCTTCACCAGTGTGCCCACGCAGGGCGGCAGCACCCTGGGCATGTCCACACGCCACAGCTGGGTGCAGCGCTACACCCTGGGGGAGTTCGCTGTGGAGCAGGAGAGAAGCCACCGAGACATGCTGCGAGACCACCTCAAAGAGGAGAAACTCAACTCCATCAAACTCAAGCTGACCAATAATGGCACTGTGGAGTCGGACGAGGCCGAGTCACTGACCTTGGACGACATCTCAGAGGACGACATCGACCTGGACAACACGGAGGTGGACGAGTACTTCTTCCTGCAGCCGATGACCACCAGGCGGCGCCGCGCTCTCCTCCGGGCGTCTGGGGTGCGACGCATTGACGTGGAGGAGAAGCACGAGCTGCGGGCCATCCGGGTGTCCCGGGAGGAGTGCGGCTGTGACTGCAGGGGGCTGTGCAACCCCGCGACCTGCGCTTGCAGCCTGGCCGGCATCAAGTGCCAGGTAGATCGCATGTCATTCCCGTGCGGCTGCAGCAAGGAGGGCTGCAGTAACGGCACAGGCCGTGTCGAGTTCAACCCCATCCGTGTTCGCACCCACTTCCTGCACACCATCATGAAGCTGGAGCTGGAAAAGAGCCACgagcaacaacaaccacaaccacaggtCACCATTGGTTACCACGGAGAACTACCAGTCAACGTCCCTGTCCAGCGTGCTTTGCAGTACCCCCTGATGTCTGACAACATCCCAGTCCCGCAGGCTCCCATCATGCACCTGCTGAGTGCCAGCGATGTGGAGCAGCATCTAGAAGAGGAAGTGGACGAAGATGAGgaagatgatgaggaggaggatgatgacgaTGGTAGTAGTTTATGTAGTGGCCTCTCGGACTGCAGCACCAACAGCCTGCACACTAGtgactctgaggaggaggaggaggaggaagatgactgTGAGTCTATGGAGGAGGGGGTGAGTGGACCCCCAGTCTCTCACACAGAGgtggtccctctctcctctgtgttggGTTACAGTGATGGCACACAGACCAACACCAACCGCGCTAACCCCAACTCATACTACCACAACCCTTCATCAGGGTACTACCATATGGACAACTCAGCCAAGCTGAACCCCACACCACAATCCCCTTGTGAAGCTCCCTCACTCCGCCTCTCACTCCCCAACAGGGAGGGGGCCACCGATGGCCCCACGGTTGTGTCACAGGAGCAGCCTAAAACCACCTCCGAGCCGCACACAGACCACCTCAGCCAGATAGAGGGACTGTATATGCATTTTCCCCACACTGACAAAGCACCAGCAGCCAACGCCTGTTCCTCAGCCCCGCAGCAGAGCAACACTCCCCACAGTGGGGAGACTAGTACACTACACCATGAGCAGCCCTATCAGACACAGGTTAGCGTTTTtaatcatgaatcttgttctagAGGCAACTCTGcggagtggtcactagctggcacggccacaaagtcataaaatcagattttaaacctaaccttaaccctaaacgtaaccacactgctaaccctaatgcct

Function

NR:

description
cysteine/serine-rich nuclear protein 3-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571226.2 False 2182 mRNA 0.56 6 20527679 20552117
XM_021571231.2 True 2166 mRNA 0.56 6 20527680 20552117

Neighbor

gene id symbol gene type direction distance location
LOC110495791 LOC106575306 coding upstream 199069 20312098 ~ 20328610 (+)
LOC110495788 LOC106574550 coding upstream 225579 20296017 ~ 20302100 (+)
LOC110497092 NA coding upstream 281791 20244354 ~ 20245888 (+)
LOC110495784 LOC106574551 coding upstream 290926 20206484 ~ 20236753 (+)
si:busm1-52i16.2 LOC106574552 coding upstream 357334 20167233 ~ 20170345 (+)
LOC110495795 LOC106574563 coding downstream 52769 20604886 ~ 20614129 (+)
LOC110495797 LOC106574564 coding downstream 111294 20663411 ~ 20696331 (+)
LOC110495798 LOC106575297 coding downstream 233952 20786069 ~ 20855643 (+)
LOC110497094 LOC106575296 coding downstream 320383 20872500 ~ 20885233 (+)
gcg1 gcg1 coding downstream 335334 20887451 ~ 20890292 (+)
G1524182 NA non-coding upstream 1066 20499006 ~ 20526613 (+)
G1524154 NA non-coding upstream 157080 20370071 ~ 20370599 (+)
G1524137 NA non-coding upstream 181638 20345663 ~ 20346041 (+)
G1524136 NA non-coding upstream 182170 20345074 ~ 20345509 (+)
G1524135 NA non-coding upstream 182672 20344792 ~ 20345007 (+)
G1524179 NA non-coding downstream 1729 20553846 ~ 20554995 (+)
G1524241 LOC106574562 non-coding downstream 5762 20557879 ~ 20560856 (+)
G1524242 LOC106574562 non-coding downstream 9376 20561493 ~ 20562121 (+)
G1524272 LOC106579309 non-coding downstream 48020 20600137 ~ 20600848 (+)
G1524276 NA non-coding downstream 62098 20614215 ~ 20614829 (+)
G1524181 LOC106574559 other upstream 43966 20473360 ~ 20483713 (+)
G1524124 LOC106574554 other upstream 220775 20305705 ~ 20306904 (+)
LOC110495776 LOC106574545 other upstream 451367 20065965 ~ 20110618 (+)
LOC110495777 LOC106574545 other upstream 494034 19992559 ~ 20049054 (+)
G1525320 NA other downstream 204574 20756691 ~ 20757412 (+)
LOC110497098 LOC106574424 other downstream 2047296 22599016 ~ 22641368 (+)
G1528194 NA other downstream 2606716 23158833 ~ 23161291 (+)
LOC110495887 LOC108430494 other downstream 3968618 24520697 ~ 24525649 (+)
G1530367 NA other downstream 4452644 25004761 ~ 25005609 (+)

Expression


Co-expression Network