LOC110495796 (LOC106575332)


Basic Information

Item Value
gene id LOC110495796
gene name LOC106575332
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 20616734 ~ 20620719 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571235.2
GTGAAACACTTCTCAGGCAGTGGTTCACTGCTTTTTTTTGCCTGTAGTGAGCCTCACAGGCTGCGTTATTTCTGAAGAGGTGTCGTTTCAGAATGAGGGGTGCTGTAGCTCTGCTGGTGTTGCTGCTCTGTCCGTCTGGGACATGGACTCAGGGAGAAagtggaggggacagagagagtttGGTAGAGAGCCACGGGACTGAAGATACAGAGACGACTAGCAAGCAGACGACCGGCCAGACCATCACAACCCCTGATATCTGGGGCGAGGTAGAGGAGCTTAGAGACATGGTGGATAACTTGGGAACCGTGGTTTTGGAGCAGAGACAGAAGCTGAGGAACATGGAGAAACAAGTGGAAAGAAGGTGGAGAGAAAAAAGGAGCAGAGGAGCTGAGGCCAGACTGGAGAGTGAGAATGCTGCCATGGGCGCCAGACTGAGTGCCAGTGAAAGGGAGGTGGAGGAGCTGCAGAGAATGAATGCAGCCCTGGAGGCCAGAGTGACAGACAGTGAGAATGGGAACACAGCTTTAGAGGCCAGACTGAATGCCAGCGAGGGGATGGTGGAGAAGCTGAGGAGAGAGAATGCAGACAGACCAAAGGTGGCCTTCTCTGCTGGTTTGACTAACGATGGACATGTAGGACCCTTTAATAGTATCACCACACTAGTATACAGAAGGGTCATCACCAACATCGGCAAGGCCTACAACCCAAATACAGGTGTCTTCACAGCACCAGTGAGAGGACTCTACTACATCAGATTCACTGCCATGGGTCTCAAGGGTCCACAGTCCATAGGTGCCTATATTTACCACAACGACAAGAGTGTCATGTTCAATCACCAGAACAATGACAATGGGCGTAATAGGTTCTTGTCTAATGCGTTGACTCTAGAGCTGGAGGCCGGGGATGTGGTCTACATGCGTCTCCCAGTAAATCAGGAGCTCTATGATGAAAAGTCGAGTAACTACAGCACCTTCAGTGGCTTCCTGCTCTTCCCTATGTGAAGGGGGCACTCTGGTGTGAGTTTGAGATCAATCAATTATCCAGATCATTTGCACCATTGATGTAAAGCGACTCCTTCACTCCATCCAGGCTTTTGCTTGTATTTTTGACAATGAGAATTGCAGAGGAAAAAGAAAATGAGATAATATATAATCATAAAAATGAatgatttatttgatttgaaaatgtaaAAGGTTGTTACATTCATATGTTGATGGACATAAGGTTAAAGCACagcattgattttcactgctacACAGACGATACACAGCTTTACATTTCCTTGTCACCAGAGTATTTTAGCTCCACAGATAAAGtattagactgtattagtgaGTTAAATACctggatggctcacaacttcctccagctaaatcaagacaagactGAGATACTTATTATTGGAGCCAATTATTAGAGAGAATTTGGCTCACATTTTAATTTACGGGCAATGAAGGTGAAACACCAGGTACAAAACCTAGGTGTCATTTTAgaacctgaactcaatttcaaatcacacattaggaatgtgaccaaaatagcttttgACCACCTGAGGAATATTTCCAAGGTgtggctgtttctctctcaggctgatacagagaaactctttccatgcttttattacaagcagactactgcaatgctctcctgtctggtctgcccaagaaagccattggtcaactgcaaaacatacagaactctgcagcccgggtactgaccaagaccagacgtagagcacacatcacatcagttttaaagtctctgcactggctgcctgaGGGTTTTTATATCAATCCACaattgtgcaccccaatacatgtcagacatacTATTAAGTTATGTACCCAGATGGTCCCTCAGGTTTTCTGtccccaaagcctaggaccaagaagTATGGAGAGGCATCCTTTTGTTATTATGCCTCCACAgtctctggaatagcctgccagagaacctgaggggggctgAAACTATAGACATAATTTAAAAGAGATCTTTTTAGTTTTGCTTTACCTAAGGGTGCTTTTTAGTTGTTCAGTCTTTGTTATTCTTTATTTTATCCTCCTATTTCAGTTTtgaattaatgtttttttttcccgTGAAGTGCATTGTGTTGCgttcatgtctgaaatgtgctgtataaataaagcttgatttaatT
>XM_021571236.2
GTGAAACACTTCTCAGGCAGTGGTTCACTGCTTTTTTTTGCCTGTAGTGAGCCTCACAGGCTGCGTTATTTCTGAAGAGGTGTCGTTTCAGAATGAGGGGTGCTGTAGCTCTGCTGGTGTTGCTGCTCTGTCCGTCTGGGACATGGACTCAGGGAGAAagtggaggggacagagagagtttGGTAGAGAGCCACGGGACTGAAGATACAGAGACGACTAGCAAGCAGACGACCGGCCAGACCATCACAACCCCTGATATCTGGGGCGAGGTAGAGGAGCTTAGAGACATGGTGGATAACTTGGGAACCGTGGTTTTGGAGCAGAGACAGAAGCTGAGGAACATGGAGAAACAAGTGGAAAGAAGGTGGAGAGAAAAAAGGAGCAGAGGAGCTGAGGCCAGACTGGAGAGTGAGAATGCTGCCATGGGCGCCAGACTGAGTGCCAGTGAAAGGGAGGTGGAGGAGCTGCAGAGAATGAATGCAGCTTTAGAGGCCAGACTGAATGCCAGCGAGGGGATGGTGGAGAAGCTGAGGAGAGAGAATGCAGACAGACCAAAGGTGGCCTTCTCTGCTGGTTTGACTAACGATGGACATGTAGGACCCTTTAATAGTATCACCACACTAGTATACAGAAGGGTCATCACCAACATCGGCAAGGCCTACAACCCAAATACAGGTGTCTTCACAGCACCAGTGAGAGGACTCTACTACATCAGATTCACTGCCATGGGTCTCAAGGGTCCACAGTCCATAGGTGCCTATATTTACCACAACGACAAGAGTGTCATGTTCAATCACCAGAACAATGACAATGGGCGTAATAGGTTCTTGTCTAATGCGTTGACTCTAGAGCTGGAGGCCGGGGATGTGGTCTACATGCGTCTCCCAGTAAATCAGGAGCTCTATGATGAAAAGTCGAGTAACTACAGCACCTTCAGTGGCTTCCTGCTCTTCCCTATGTGAAGGGGGCACTCTGGTGTGAGTTTGAGATCAATCAATTATCCAGATCATTTGCACCATTGATGTAAAGCGACTCCTTCACTCCATCCAGGCTTTTGCTTGTATTTTTGACAATGAGAATTGCAGAGGAAAAAGAAAATGAGATAATATATAATCATAAAAATGAatgatttatttgatttgaaaatgtaaAAGGTTGTTACATTCATATGTTGATGGACATAAGGTTAAAGCACagcattgattttcactgctacACAGACGATACACAGCTTTACATTTCCTTGTCACCAGAGTATTTTAGCTCCACAGATAAAGtattagactgtattagtgaGTTAAATACctggatggctcacaacttcctccagctaaatcaagacaagactGAGATACTTATTATTGGAGCCAATTATTAGAGAGAATTTGGCTCACATTTTAATTTACGGGCAATGAAGGTGAAACACCAGGTACAAAACCTAGGTGTCATTTTAgaacctgaactcaatttcaaatcacacattaggaatgtgaccaaaatagcttttgACCACCTGAGGAATATTTCCAAGGTgtggctgtttctctctcaggctgatacagagaaactctttccatgcttttattacaagcagactactgcaatgctctcctgtctggtctgcccaagaaagccattggtcaactgcaaaacatacagaactctgcagcccgggtactgaccaagaccagacgtagagcacacatcacatcagttttaaagtctctgcactggctgcctgaGGGTTTTTATATCAATCCACaattgtgcaccccaatacatgtcagacatacTATTAAGTTATGTACCCAGATGGTCCCTCAGGTTTTCTGtccccaaagcctaggaccaagaagTATGGAGAGGCATCCTTTTGTTATTATGCCTCCACAgtctctggaatagcctgccagagaacctgaggggggctgAAACTATAGACATAATTTAAAAGAGATCTTTTTAGTTTTGCTTTACCTAAGGGTGCTTTTTAGTTGTTCAGTCTTTGTTATTCTTTATTTTATCCTCCTATTTCAGTTTtgaattaatgtttttttttcccgTGAAGTGCATTGTGTTGCgttcatgtctgaaatgtgctgtataaataaagcttgatttaatT

Function

NR:

description
uncharacterized protein LOC110495796 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571235.2 False 2167 mRNA 0.44 6 20616734 20620719
XM_021571236.2 True 2125 mRNA 0.44 5 20616734 20620719

Neighbor

gene id symbol gene type direction distance location
LOC110497093 LOC106574562 coding downstream 20981 20558557 ~ 20595753 (-)
LOC110495793 LOC106575303 coding downstream 92859 20468182 ~ 20523875 (-)
LOC110495790 LOC106574555 coding downstream 153941 20351488 ~ 20462793 (-)
LOC110495789 LOC106574554 coding downstream 307284 20304687 ~ 20309450 (-)
LOC110495787 LOC106574546 coding downstream 325914 20259167 ~ 20290820 (-)
LOC118941121 NA coding upstream 166354 20787073 ~ 20835521 (-)
zgc:92027 gran coding upstream 234705 20855424 ~ 20863001 (-)
LOC110495804 LOC106574399 coding upstream 279783 20900502 ~ 20947386 (-)
LOC110495806 LOC106574400 coding upstream 328411 20949130 ~ 20955845 (-)
LOC110495808 psde coding upstream 335160 20955879 ~ 20966920 (-)
G1525152 NA non-coding downstream 695 20615786 ~ 20616039 (-)
G1525132 NA non-coding downstream 61924 20553923 ~ 20554810 (-)
G1525107 NA non-coding downstream 85435 20531025 ~ 20531299 (-)
G1525105 NA non-coding downstream 88570 20527718 ~ 20528164 (-)
G1525035 LOC101478692 non-coding downstream 315339 20300556 ~ 20301395 (-)
G1525195 NA non-coding upstream 29463 20650182 ~ 20650404 (-)
G1525255 NA non-coding upstream 72093 20692812 ~ 20693057 (-)
G1525260 LOC106574564 non-coding upstream 72850 20693569 ~ 20694149 (-)
G1525265 NA non-coding upstream 83909 20704628 ~ 20704830 (-)
G1525268 NA non-coding upstream 85958 20706677 ~ 20707081 (-)
G1524755 LOC106581475 other downstream 886666 19722745 ~ 19730068 (-)
LOC110495764 LOC106574529 other downstream 1039634 19573628 ~ 19577133 (-)
G1524473 LOC106574589 other downstream 1452608 19143985 ~ 19164126 (-)
G1524311 NA other downstream 1867339 18749125 ~ 18749395 (-)
G1527230 NA other upstream 1641337 22262056 ~ 22262462 (-)
G1528018 NA other upstream 2251326 22872045 ~ 22885833 (-)
LOC110495841 LOC106574435 other upstream 2538839 23008547 ~ 23168591 (-)
LOC110495851 LOC106574449 other upstream 2860821 23479558 ~ 23541681 (-)
LOC110495852 LOC106574460 other upstream 2921887 23542411 ~ 23543631 (-)

Expression


Co-expression Network