LOC110495797 (LOC106574564)


Basic Information

Item Value
gene id LOC110495797
gene name LOC106574564
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 20663411 ~ 20696331 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571237.2
TGGCAGTGGCTGTGGTCAGTGTTGCCTGCGCTAACTTGGAATGGTTTTAAATCCCACGCAGCCTCACTTAACCCACCGCACAGTCATTCATCAGCAAGCTCTACCGTGGATCGATGTTGCTCTAACCCCAGAGGTCGACCTGTCGCACATACAGCGAGAAATGATCAGTAGCAGCAGCGTCTATGGCCTAAAGATGCAGTGGACCCCAGAGCATGCGCAGTGGGCGGAGCAGCACTTTGACATCACCTCCACCACGCGCTCGCCGGCCCACAAGGCCGAGGCTTACCGGGGCCACCTGCAGCGCGGCGGCAGCACCTACCAGTACGCCTGGGCCAACGACGACATCTCTGCACTTACCGCCTCCAACCTGCTCAAGAAGTACGCTGAGAAGTACTCTGGCATCCTGGAGATGCCCAGTGAGAGGGCCCTGCTGAACTCCTACGCCGAGGCCGGGATGAACGGCAGGAAGGGGGAGGGCGAGGCCTGGCAGGAGGGGGTATACTGCGTCCCCGAGGGGATGTCCATGAGGAAAGGAGGGGTGGCGGCGGAGGTGGCTGGTATGTGCAGCTCGCCATCCCCGGGCCTGGCCTCCAGCGGACTGACAGAGCCTGGTTACTCCAGTAGCAGCTGTGGTAGTCACACCGCCACGGCCCTCCACTCCTCTGCAGGCTCCTCTCAGGAATACGGCCCCAGCTACAGTGGCTCCTACCTGGGCTACAGCTCCCAGGTCACCACCTCCCCGCTGCACAGCTCCGGCCTCTTGcagccccctcctccacccccccacccctcccaggTCCCGGCCTACAATGGGGGATCCTCCAACCTTTCGGGCTACAATTACCCACATGCCGGGTACCCCTCCCAGAGCTCTGTGGGGCCAGGCTACAGCCCTGGGGGagccccccctccatcctcctacCTACCGTCAGGGATCGCCGCTCCCACccccctgcccccctcctccACGCTCCCCGGGTACCCCTACCAGTCGCACAACCTTGGCCCCATCGCGCCCACGCCTCTGAATGGCAGCTTGTCCAACTCTCTGAAGAGAAAAGCCTTCTACATGACAGGGCAAGGAGAGATGGACTCCACTTATGGAAATTTTGTCTACGGCCAGGCACGCAGCACCGCAGAGAGCCCCATGTACAGGGTACCGGACAGCAGCATCTCAAATGCGGGCGGCGGAGGGAATGGTTTTGACAGGAACGCTGGCAAGTCATCTTTGCCGTTTAATACCCAAAAGCAGCCCATGGCCTCTGAGCAGTCTGCGGGTGGAGCCCTCACCCCTCCGTCCTATACCTCCACTCGGGGTGGCTCGCGCTCAACCGACTCCCTGGGCAGCTTCACTTCTCCCTCCCTGAGCGACCAAGGGGATGAGCACCGCCTgcacctctcccacctctccctgacGGGGGCGACCTCATCCTCCCGGCCCGCTGAGGAGCAGCTGAAGAGCAGCGACCCCCACCTCCTGGACATGGTGACCTCTGAGATCCTGCAGCAGGGACCCCCAGTCGACTGGAGTGACATTGCAGGCCTGGAGCTGGCCAAGGCCACTCTGAAGGAGGAGGTTCTCTGGCCCATGCTACGTCCGGACATGTTCAGCGGCCTAGGTTCGGCCCCGAGGTGCGTTCTACTGTTCGGCCCCAGAGGAACTGGCCGGACGTTGCTGGGCCGCTGCATGGCAAGCCAGCTGGGGGCACCCTTCCTGCAGCTCAGAGGCTCCACCTTGGCCACCAAGTGGCTAGCAGAGGGTGACAAGATCCTGCGGGCCTCCTTCCTGGTGGCGCGCTGCCGCCAGCCCTCAGTCCTGTTCATCAGCGACGTGGACATGCTGCTGTCAGCCCAGCTCAGCAACGAGAGCCCCGTTCACCGCCTCAAGGCCGAGCTCCTGGCCCAGCTTGATGCGCTGCTCCTGGGGCCGGCCGATGACTCCAACAACCACGTCCTGGTGGTCTGCTCCACCAGCAAGCCCCAGGACATGGACGAAGGGCTGCGACGGTACTTTGGCCGGCGGGTCCTGGTGCCGCTGCCGGACGGTTCGTCCCGCCACCACATGCTGAGCCAGCTGCTGTCCCAGTCCCAGCGGAAGTACTGCCTCAGTGAGGAGGAGCTGGTGCTGCTGGTCCAGCGCACCGAGGGCTTCTCCGGCCTGGACGTGGCAAGGCTGTGCCAGGAGGCCCTGGTGGGCATGCTGCACACCTCCTCCCAAGGCCTGGACCTCTCGGTGAGCATCATGCCCACGGGCCAGATGCGACCCCTCACCTACCAGGACTTTGACAGTGTTTTTTGCAAATTCCAGCCCAGTATATCGCAGAAAGAGATCGACACGTACACCGAGTGGAACAAAATGTTTGGGTGCGGTCAGTGAACCTCGGGGGGAAAGTCCTCAAGAAAGAGGCGTTGGGAATTCTTTGACCTGTCTGTGGTGCTAACCAGAGAGGAAGGCACACAAGAGGGGCGACGTAAACCCCCCACACGTGAGACCTGACGCCAGAGGTGGAGAAACATCAAGAGACTTGGTTGGAGTGATACCTGATGGTTTTGCAGGTAACGAGCAGAGATTTCATTAGGATGCTTGACGCTGCTAAAGTCAGGCATAGTTATACACATTAAGAAGGGGTCAActtgagaagagacagaggaggaccctgtgtgtatatatacatttgtTGTTGTCCCCTAAAAATTTAGTTGGCTAACCAAGTGCCTGTAGTGGTGCTTTCTtaattctcttttttttttatgtataatGATTTTGTTTGCCTCACAATCTACATTAATGGCATGTGCTGATATTATGAGCTTTAAACTTCAACAGCAAAATTAAAATTAGAGTGGCGGTTGCCATTTTCTCCTGCCATTTCACCAAGTATCAACAGTATTCCTCAGGGGGTGACAGGAATTTGGACCCCCGATCCATACACTTCATCTCTGATCCTCTGTCTGCAAAAAAAAAA
>TU1746420
GTGGACCCCAGAGCATGCGCAGTGGGCGGAGCAGCACTTTGACATCACCTCCACCACGCGCTCGCCGGCCCACAAGGCCGAGGCTTACCGGGGCCACCTGCAGCGCGGCGGCAGCACCTACCAGTACGCCTGGGCCAACGACGACATCTCTGCACTTACCGCCTCCAACCTGCTCAAGAAGTACGCTGAGAAGTACTCTGGCATCCTGGAGATGCCCAGTGAGAGGGCCCTGCTGAACTCCTACGCCGAGGCCGGGATGAACG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571237.2 False 2966 mRNA 0.59 3 20663411 20696331
TU1746420 True 263 lncRNA 0.65 1 20693564 20693826

Neighbor

gene id symbol gene type direction distance location
LOC110495795 LOC106574563 coding upstream 49282 20604886 ~ 20614129 (+)
LOC110495794 LOC106574560 coding upstream 111294 20527679 ~ 20552117 (+)
LOC110495791 LOC106575306 coding upstream 334801 20312098 ~ 20328610 (+)
LOC110495788 LOC106574550 coding upstream 361311 20296017 ~ 20302100 (+)
LOC110497092 NA coding upstream 417523 20244354 ~ 20245888 (+)
LOC110495798 LOC106575297 coding downstream 89738 20786069 ~ 20855643 (+)
LOC110497094 LOC106575296 coding downstream 176169 20872500 ~ 20885233 (+)
gcg1 gcg1 coding downstream 191120 20887451 ~ 20890292 (+)
LOC118941068 adcy10 coding downstream 194378 20890709 ~ 20900107 (+)
LOC110495810 gemin8 coding downstream 272949 20969280 ~ 20979259 (+)
G1525211 NA non-coding upstream 430 20662698 ~ 20662981 (+)
G1525190 NA non-coding upstream 16021 20647070 ~ 20647390 (+)
G1525182 NA non-coding upstream 20591 20642503 ~ 20642820 (+)
G1525178 NA non-coding upstream 23580 20639549 ~ 20639831 (+)
G1524276 NA non-coding upstream 48582 20614215 ~ 20614829 (+)
G1525275 NA non-coding downstream 15829 20712160 ~ 20712367 (+)
G1525285 NA non-coding downstream 23039 20719370 ~ 20719686 (+)
G1525291 NA non-coding downstream 28656 20724987 ~ 20725206 (+)
G1525299 NA non-coding downstream 38048 20734379 ~ 20735018 (+)
G1525317 NA non-coding downstream 55650 20751981 ~ 20752210 (+)
G1524181 LOC106574559 other upstream 179698 20473360 ~ 20483713 (+)
G1524124 LOC106574554 other upstream 356507 20305705 ~ 20306904 (+)
LOC110495784 LOC106574551 other upstream 428231 20206484 ~ 20236753 (+)
LOC110495776 LOC106574545 other upstream 587099 20065965 ~ 20110618 (+)
LOC110495777 LOC106574545 other upstream 629766 19992559 ~ 20049054 (+)
G1525320 NA other downstream 60360 20756691 ~ 20757412 (+)
LOC110497098 LOC106574424 other downstream 1903082 22599016 ~ 22641368 (+)
G1528194 NA other downstream 2462502 23158833 ~ 23161291 (+)
LOC110495887 LOC108430494 other downstream 3824404 24520697 ~ 24525649 (+)
G1530367 NA other downstream 4308430 25004761 ~ 25005609 (+)
G1525254 NA non-coding upstream 1238 20692107 ~ 20692326 (+)
G1525223 NA non-coding upstream 22686 20670629 ~ 20670878 (+)

Expression


Co-expression Network