LOC110495806 (LOC106574400)


Basic Information

Item Value
gene id LOC110495806
gene name LOC106574400
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 20949130 ~ 20955845 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110495806
GCAGCATGGGTGATGTGTTGCGGTTTgactggctggtctcagatgggTGTCTGAGAGAAAGTTTTGGTCCATACACACACAAtattgcatctgaaatggcacactAATCCTTTATGTAGTTCCCTGGTCAAATCTAGTACACATATATTGTGAATGGGGTGCCATTTCTGACACACCCTATGAATCTTGCCAAGCTGCCAGCTATCACTAGCTGTCATTTTTCAATTAGTTATGCCATGGTTGATGGCACTTCTGATACTCCTTGAAGCCTTGTTTTCCAATCACGTTAAAATTACCCTCCCCATTTGATGTGAGACATGCCCACTTTCAAGATTGAGTAATACTTTCTGATAAAAAAAGGAAATATATGAATGTTGTCATAAACTATAAACGTGTTTTAAATATATAATCTACCTGCCACATGGTACTAGAGGTATAACATTAGCAGTATTTTGTTCCAGTCCAGCAAAACGAACATGAGAAATGTCTATAACTGTTTATATAGGCTACTTCACCTTATTCCTATACTGTAATGTAAAATGTAACAACTGTAGGCGTTTCATTAGGTTCGTTCCAAGCGTATTTAGAGTTCATATTCCCTACATGTGATACGCGTAACCTTAACCAAATTGGTTTTTGTGTTGCGCGTAATGCTACTTGTGCAGCTCCAGTATCTTCGCATCTCAACATCCAACGCCCAATAATATGGATAGCGACTACCACAGCTCAGACAGGTCTGAACTCGCTACCCAGTACCACCCTATGCTCTCCTCTAGTGAGGGGCTGAACTGAATAGAGGAACTAACACGTTCTAATAAAGAAACCACAGGGATGACAAATCCGTCAGAAGCAGACGACTTTATCGACTCGGAGGACTCATTTGGTGACGGCGACAAGGGAAGCAGTAGGCAGTCTGCTCAAAAAACCGTCTGTGACATTCGTCATACCTTCCATGGATCTACAGAGGGACGGTATCCCTCGTCTCAGCCCAGCCAAGCTCAACCCGCGTCTGCTACCTCGCCTGGTACCATGTTCCCACACCGGACACTGCACGGAGCCACCTACCCGGCCCTTGCCATCACCAGTTCGGGTCACTACATGGCACACCATCCTGTGGTCACACAAGGCTCATATAATAGCCTCTTGACCACCACGTCACCTCAAGGCTTCCCAGCGCCCGGATACTTTTACGCCCAGCCATATGGGCATGGCCACCAAGGAGGTGCTTTCCACAAGAGCTCAGCAATGCAAACCGGGATGGTTTTTGGTAAAGCGCAAGTTTATCTCTGCAACAGGGCTCTGTGGCTCACGTTTCACAGGCACCAAACAGAGATGATCATCACTAAACAGGGGCGACGAATGTTTCCATTCCTGAGCTTTAATATATCTGGTCTTGATCCGACGgcaaattacaatatttttgtgGACGTCAGTCTCGCTGACCCTAATCACTGGCGGTTCCAAGGAGGACAGTGGGTACCCTGCGGCAAAGCTGACTCAAATGGGACAGGGAACAAGGCCTACATGCATCCAGACTCTCCGAACACCGGCGCGCACTGGATGCGTCAAGAAATTTCTTTTGGAAAACTGAAGTTGGCAAATAATAAAGGGGCATTGGAAAGTGCAGGGCAGATGGTTGTCGTTCAGTCCCTCCATAGGTACCAACCCCGTCTTAATGTGGTCGAGGTGCACGAGGATGGGGCCGAGAACGCCAGTCAACCCAGACAATCATTTACGTTCCCCGAGACGCAATTCGTTGCAGTCACAGCATACCAGAACACAGACATAACACAGCTGAAAATAGACCACAATCCTTTCGCAAAAGGTTTTCGGGACAATTATGACAAAATCTACACAGGCTACGATAGTGACCGGTTGACGCCATCACCGAGTGACTCTACCTACGCTCAGTTTGTGCCCGGTGCCAGATATGCTCTTGCTAATTCTTTCCTTCAGCACCAATTCGTCAGCACTTATGCCAAGTCCTGTTTCCGCCCTAGCGCAGGAGCTACGTCTGGACTAGACTATAACCTTCCCTTAACTAACAGCATGCTGTCACCGCAAACCAGCGAGGAGGACACGATGGCGGCATCCCCGAGATGGTTTGTGACACCGACAAACAACAGACTGGACTATGCCTCCCGCACAAATGACGCGACTGGAAACACGGCCACTTTGCTGTCATATGCAGCAGCTGGAAAGGCCCTACAGCTGTCCGCAACTGACAGTTCGGGTAGAGCCCTTGCTTATTACGCAGAACCGACGGATTTTGCGCGTACCTCACCCCAGTATTGTGGTGCGTCTAGTCCGGCTCTGTCCTGCTGGACTAATGGACACGCTATTGGTACTGCGAACTTTGACGAGGTCCTCTCACTTTCAAAGGAGAGTTTACCAACGGGTGTCTCTGAAGACGCAAAACCACAAGATATCTCGGAGTCTAGTTGGATAGAGACATAAACTGAATTGAAGAGATATCCCGTCCTAGGTTATTGGCATCAACGAGAACTGTCTAAATACCCACCTGGACATCGTTCATTCGTTTTTTTCATTAGACTGCATTTTTGGATTAGCCTACAGTGGGCTGTGGATACGACTGAAGTATTAAAATGTTAGCAACAAAATAGTCTATTTAAGCTATAATAATGTATATATTTAACATTAGCTGTAGTCCTACTCTAGATGTTTTCATTGAATCCTGTTTTCTAATTTGACTGATTTGATTGATTTTTGATTTGTTGAATACATTTTAGGAAAATGTTCATGTCTTAGCCTGCATTGAGTTTCATTGGCATTATGTTTTATTGTGCTGGCTTTAGTAGGCTATATAGGATCCACAATGTATTTTActtgtgcaaaaaaaaaaaaaaaacaaggttctGAGCTATAACAACTGTACTTAAAGTAAGTAGTCCAATGCTTCAAAACACAAAGGACATATTCATAAATCAATACCCAACGCAAGAAGGTCAAGAGGGAATTTGTTGTAGTCTTTGATAGGATGTACACTAAGTCATTATCTAAAAATATAAATTCGATTAAAAGCAGATGGATAAATTGCAATTCCTTTTCTCTTATACCTGGTATGAAGGTTTATTACTGCGGTTGCTGCTTTGCTTGCAGATGCGTAAACAATGGAGCAAACTCCAGATGAAAGATATTCATGAGGACCACAATGGATATAAATAATAACTTGTTTTATAATCCTTGATAATGTttaatgtgtgtattgttgtactCACATAGCTGATTCAACatatgtattttacatttgtCAAATAACTCATTTATTCGGCGACTCTTGAAGTcttctttaaaaataaaatattttagtgttaaagtaactgtccagtgtttccagatttctatgaaatatgacctataattgacaatatgagtgaaatactTTTTATTTCAAAAGATAATAATTAAATATGTTGAAAATAAGCTTTTCGGTGTttgaatggtgtgggcataccccaataACACAATGGTGGGGGCATATTAGTGGGGGTGTATACAGGTCATTAAAATTTTTAATGACAAGTCAACCGCTGATTGGCCAACTCCACCAATGAGCCAACCTGACTTTACATTATATGCGGAAATTGTaagcatttttaaaatgttttttttttctcaaatgtaTGCTTTGGCGTCAAATGCGAGTATAggacgagtcaacaacattatttgagtATGAGCTAACAAAAACCTTTAAAAGTGACATTTTCACTGGACTTTAGTTACTTTAACCGTCATTGAGGTATTTAATAAAAATTAATATCGGTTAGCCCAGAACAAAAATCTTGCGCAATTTGTTCAGTTGTGTTTACATATTTAAATATAACGTACATTATATGCATAGAGCTTCCTATTGGTTGTTTATGATCATTTCCAAGTGGGAAACTCGGCCAAACTGGAAGTTTACGAGTTGTTTTTCCAGTAGTCTTTCTATGAGAGATTAACAGAAAGTAGTCGTGGCCCAATCCCAAACCAGGGACTGTTTACATAGCAGGTAACGTGGCAGGTTAGAATTAACATAACAGGCTAGGAgaatgaggttaaggttaggaaaagagaGGTTGACAACTGTAGCATTGTAGTTAAGCCTAAACAACTGTTTTCCCCAGACACTGTCCATTAGATGGAGCTGTAGTAGACCTACTCAATCTAGTCACAACGGTAGAAACTAAACAGACCATCAATCCTGACAGACCATCAGTGACAACACGTCAGGcatttttttacttgagaaatactgcaccaaacacacAACTGACCGACTAAAACCTGCAAAAACGTCCAAATTAAttacagatttaaaaaaatatgtattctcACTATTTTGAAAAAGTATTGAGTTTATTCCTATGGTGACCcatgggggacaaacatcatGAACGGCCACATCGAACCACACCCCCAAgaatgatttttttatttttaaatgaatgAGCAACAGAAACACTGAGCATTCAATTGCTTTTTAGCCTAATCAAAAAGGGGTGAGTATCCAAAAATGTAATGGTTTGCTGTCAAACCAGCCTCCAAAAAAAGCTAAAGGGGATCTATAAAGATTTGCTATTGCCCATTGCTACTAGAGCAGCCCTTCCCCAAGACCAGCCTTCTGACTGACTTCCTGAAGCAAGGCCGCTGGAGAGGCCCATTGGAAACATCGGTCTACCATTCACTGCTCAACCTGTTGTGAAGATGTCAGGTGTGAATCAAAACTTGACTGGTTTAGGCTACACTTATACTGTTTAATTGCCTATACAAATAACAAACTTTTTTTTGGTAATCATCTTCAATTGCATATCCTAACTTTGGATTTCTTACCAGGTCATGGCTTAAGTTGTTCAGACATCTTCATATACACATTGTGGCTTAGTTGGAAGAGCATGACGCATGCAACGGcagagttgtgggttcgattcccatgggggaccagtacgaaaatgtatgtactcactactgtaaatcgctctggattagagcttctgctaaattatGTAAATGTATAAATACTTATCATATACTCATTTCGGTTCCTCTGGGGCTGGACCAAGAGCAGTTTATAGTGCTGGAAGGAGACAATATATGGACTTGATCCTGCCCTTCAAAGGGCCTTTTCATACACTTTTTGTTGACATTCTAGAATGTCATGTCAAAAATGTATTCGTTTCCCCTTTACTGTCTGTTATCTAGAATTTAAATGAATGAGTGCGCACACGCATTTGAATCAGGAAATCTCGATTGTTGCATAGAACAACAGTGCAGTGCAATTTCATCGTGGTTATGCGTGTGCCTCTTG

Function

NR:

description
T-box brain protein 1-like

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110495806 True 5311 mRNA 0.42 6 20949130 20955845

Neighbor

gene id symbol gene type direction distance location
LOC110495804 LOC106574399 coding downstream 1744 20900502 ~ 20947386 (-)
zgc:92027 gran coding downstream 86129 20855424 ~ 20863001 (-)
LOC118941121 NA coding downstream 113609 20787073 ~ 20835521 (-)
LOC110495796 LOC106575332 coding downstream 328411 20616734 ~ 20620719 (-)
LOC110497093 LOC106574562 coding downstream 353377 20558557 ~ 20595753 (-)
LOC110495808 psde coding upstream 34 20955879 ~ 20966920 (-)
LOC110495807 LOC106574402 coding upstream 12402 20968247 ~ 20976998 (-)
LOC110495812 LOC106574405 coding upstream 62701 21018546 ~ 21028291 (-)
LOC100136027 NA coding upstream 115037 21070882 ~ 21073322 (-)
LOC110495813 prps2 coding upstream 119340 21075185 ~ 21088022 (-)
G1525597 NA non-coding downstream 56783 20892069 ~ 20892347 (-)
G1525312 NA non-coding downstream 200692 20748190 ~ 20748438 (-)
G1525297 NA non-coding downstream 219978 20728920 ~ 20729152 (-)
G1525279 NA non-coding downstream 233743 20715175 ~ 20715387 (-)
G1525268 NA non-coding downstream 242049 20706677 ~ 20707081 (-)
G1525645 tceanc non-coding upstream 68501 21024346 ~ 21024693 (-)
G1525646 NA non-coding upstream 68972 21024817 ~ 21025196 (-)
G1525649 NA non-coding upstream 74188 21030033 ~ 21030807 (-)
G1525650 NA non-coding upstream 75363 21031208 ~ 21031411 (-)
G1525651 NA non-coding upstream 78181 21034026 ~ 21034260 (-)
G1524755 LOC106581475 other downstream 1219062 19722745 ~ 19730068 (-)
LOC110495764 LOC106574529 other downstream 1372030 19573628 ~ 19577133 (-)
G1524473 LOC106574589 other downstream 1785004 19143985 ~ 19164126 (-)
G1524311 NA other downstream 2199735 18749125 ~ 18749395 (-)
G1527230 NA other upstream 1306211 22262056 ~ 22262462 (-)
G1528018 NA other upstream 1916200 22872045 ~ 22885833 (-)
LOC110495841 LOC106574435 other upstream 2203713 23008547 ~ 23168591 (-)
LOC110495851 LOC106574449 other upstream 2525695 23479558 ~ 23541681 (-)
LOC110495852 LOC106574460 other upstream 2586761 23542411 ~ 23543631 (-)

Expression


Co-expression Network