LOC110495810 (gemin8)


Basic Information

Item Value
gene id LOC110495810
gene name gemin8
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 20969280 ~ 20979259 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036952263.1
TCCAGCCTGGAGCTGCTGGCCATCAACTGAAGGAGCTGGGGGAGGATCAGAGGGCACCAACGGCATCCGGGgcatattcattaggcaccaaatggaagaaaacagaccGAAACATAGTAGGACTACCTGCCCTTGTCCCACTAGACTGTAGCTGCGATCTAAACCACGCTGCAGGAGAAGCACCACCATGGAGGACCATTGTAGCATCTACTCCTGGTTTGCCCACCCTGTGTATGGCCACTACTGGCAGCATTACCAGCAGGCTATGAACTGGCACCAGAGACACAGGCAGGCCTACAGAAAGGCCTGGGAGGCTGCCTACGGGCCAGGGTACCCCCAACGCTACGCAGACTGGCAtgggggagagggtggagggaggagagcagaggagactgCTAAGGACCACGTGGAAGAGGATTTGGAGGGGGGTGCAGATGACGAGGAGGGGGACGGGGAAAGTGGCTCGGACAGTGAAATCGAATGTGATGTCAGCAACATGGAGATCACAGAGGAGCTGCGCCAGTATTTTGCCCAGACTGAGCGGCACAAGGAGGagctcaagaagcagcagcagctggAGGCGGAGCAGCAGGATACTTACGTGTTGGCCGACCAGGACATGCACAGAATTTCCTGGCACGGCAGGTCGCTGCCCCCCTCTGAGCGGCCGGGCGAGCGCCGAGGCGCTGAGATGAAGAAGCTGTACGGGGAAGACGCGGCAAAGGTCCAGGGTATGGAGACGGCCATGCAGCTCACCTTCGACAGAAACTGTGACAAGAAACAGCCCAAATACTGGCCCGTCATCCCTCTAAAACTGTAGCTCCACTACGGACATCCATCTTCTTCCAATGGAGCCCACCAACACAGTTCCAGACGAGACAACCCCCTGAAACACAGAGCTGGGaaactgggtcatgttcagtagggagGAAACTGATCGAAACGGAGAGGTACTCCCTGCAACCTGATCACTGTGCCTAAACATTCCCCTCTCACCATAAAATCTTAAGTCAAccaacattttgggggggggatttTTTTTTCTGTCATTCTTAGCCAGTTATTTCTGTTCTTCTGGTTTCACAATGAAATGATGACAAATTCATAAGAAGAGGACGAGTATACACAATTTGCATAAATGTTTAAGCTCCCCCAGCAAATTGAGTTTAGACTCAaaagtgaaatattttttttcaggCTACCTGTTCTGTCAACGAACATGGTTTCATGTCCAGTTAGCTTTCAATCTATGATCCTATTATTGCTGTCAAGGTAGTTTTTTGTATATTTCTTTTTTATTTGGGGGGGATTTCTTTCCTATTTCATTCAACCATAAATGAAGAAAGAGATGGTTTTGATTTCATCATCTCCAGATACTGCATAATAGCCTCCGCCCCAATGTTTGTCTGCTTCTTTCTCAACATTGATGGGTTGTATCTGTCTCAGCGGCTCAGGTAGAACAATGTGTTGGTTTCTTCCCACGTGTCTGTTTTATATCAAaattgtttgtattttttttttttatagattgTTGATATAGTTTCTAATAAAGAATGTTTGTGATGAATTGAAACTCTAAATACGTTATCAGATTTGAAATGTCAAATTCTGTTTCAGTGAGGCTAATGATCAT
>XM_036952262.1
TGTCTGGGAGGAAGTAGACCATCATGTTTCAACATTTCAGCTGTTACAGACGAACTGACACTCCAAATGCTTAAAAGCCACAATGTAATTTCGACAGTCTGGCCCTGCCACTTTGATTGGCTTCTGGGATATTTTTTTCTCCCTGTTCTTGGTTGCCGTATGCGTTTGTCAGCGTTTGAGTGTACTGCACTAAATGAAGACTAGACTGTAGCTGCGATCTAAACCACGCTGCAGGAGAAGCACCACCATGGAGGACCATTGTAGCATCTACTCCTGGTTTGCCCACCCTGTGTATGGCCACTACTGGCAGCATTACCAGCAGGCTATGAACTGGCACCAGAGACACAGGCAGGCCTACAGAAAGGCCTGGGAGGCTGCCTACGGGCCAGGGTACCCCCAACGCTACGCAGACTGGCAtgggggagagggtggagggaggagagcagaggagactgCTAAGGACCACGTGGAAGAGGATTTGGAGGGGGGTGCAGATGACGAGGAGGGGGACGGGGAAAGTGGCTCGGACAGTGAAATCGAATGTGATGTCAGCAACATGGAGATCACAGAGGAGCTGCGCCAGTATTTTGCCCAGACTGAGCGGCACAAGGAGGagctcaagaagcagcagcagctggAGGCGGAGCAGCAGGATACTTACGTGTTGGCCGACCAGGACATGCACAGAATTTCCTGGCACGGCAGGTCGCTGCCCCCCTCTGAGCGGCCGGGCGAGCGCCGAGGCGCTGAGATGAAGAAGCTGTACGGGGAAGACGCGGCAAAGGTCCAGGGTATGGAGACGGCCATGCAGCTCACCTTCGACAGAAACTGTGACAAGAAACAGCCCAAATACTGGCCCGTCATCCCTCTAAAACTGTAGCTCCACTACGGACATCCATCTTCTTCCAATGGAGCCCACCAACACAGTTCCAGACGAGACAACCCCCTGAAACACAGAGCTGGGaaactgggtcatgttcagtagggagGAAACTGATCGAAACGGAGAGGTACTCCCTGCAACCTGATCACTGTGCCTAAACATTCCCCTCTCACCATAAAATCTTAAGTCAAccaacattttgggggggggatttTTTTTTCTGTCATTCTTAGCCAGTTATTTCTGTTCTTCTGGTTTCACAATGAAATGATGACAAATTCATAAGAAGAGGACGAGTATACACAATTTGCATAAATGTTTAAGCTCCCCCAGCAAATTGAGTTTAGACTCAaaagtgaaatattttttttcaggCTACCTGTTCTGTCAACGAACATGGTTTCATGTCCAGTTAGCTTTCAATCTATGATCCTATTATTGCTGTCAAGGTAGTTTTTTGTATATTTCTTTTTTATTTGGGGGGGATTTCTTTCCTATTTCATTCAACCATAAATGAAGAAAGAGATGGTTTTGATTTCATCATCTCCAGATACTGCATAATAGCCTCCGCCCCAATGTTTGTCTGCTTCTTTCTCAACATTGATGGGTTGTATCTGTCTCAGCGGCTCAGGTAGAACAATGTGTTGGTTTCTTCCCACGTGTCTGTTTTATATCAAaattgtttgtattttttttttttatagattgTTGATATAGTTTCTAATAAAGAATGTTTGTGATGAATTGAAACTCTAAATACGTTATCAGATTTGAAATGTCAAATTCTGTTTCAGTGAGGCTAATGATCAT
>XM_021571255.2
GTCAACACTGAACACTCAAACATTCTaatgacaacaaaaacaaaccATTTAATTTAGACTACAGCTGTAGCAGAGCACATGTATGACGCACAAATTGCATATCAAATCTTCGGCACCTGTGTGTGCCACTGCCAATTGACAGGCTTCTGGGATATTTTTTTCTCCCTGTTCTTGGTTGCCGTATGCGTTTGTCAGCGTTTGAGTGTACTGCACTAAATGAAGACTAGACTGTAGCTGCGATCTAAACCACGCTGCAGGAGAAGCACCACCATGGAGGACCATTGTAGCATCTACTCCTGGTTTGCCCACCCTGTGTATGGCCACTACTGGCAGCATTACCAGCAGGCTATGAACTGGCACCAGAGACACAGGCAGGCCTACAGAAAGGCCTGGGAGGCTGCCTACGGGCCAGGGTACCCCCAACGCTACGCAGACTGGCAtgggggagagggtggagggaggagagcagaggagactgCTAAGGACCACGTGGAAGAGGATTTGGAGGGGGGTGCAGATGACGAGGAGGGGGACGGGGAAAGTGGCTCGGACAGTGAAATCGAATGTGATGTCAGCAACATGGAGATCACAGAGGAGCTGCGCCAGTATTTTGCCCAGACTGAGCGGCACAAGGAGGagctcaagaagcagcagcagctggAGGCGGAGCAGCAGGATACTTACGTGTTGGCCGACCAGGACATGCACAGAATTTCCTGGCACGGCAGGTCGCTGCCCCCCTCTGAGCGGCCGGGCGAGCGCCGAGGCGCTGAGATGAAGAAGCTGTACGGGGAAGACGCGGCAAAGGTCCAGGGTATGGAGACGGCCATGCAGCTCACCTTCGACAGAAACTGTGACAAGAAACAGCCCAAATACTGGCCCGTCATCCCTCTAAAACTGTAGCTCCACTACGGACATCCATCTTCTTCCAATGGAGCCCACCAACACAGTTCCAGACGAGACAACCCCCTGAAACACAGAGCTGGGaaactgggtcatgttcagtagggagGAAACTGATCGAAACGGAGAGGTACTCCCTGCAACCTGATCACTGTGCCTAAACATTCCCCTCTCACCATAAAATCTTAAGTCAAccaacattttgggggggggatttTTTTTTCTGTCATTCTTAGCCAGTTATTTCTGTTCTTCTGGTTTCACAATGAAATGATGACAAATTCATAAGAAGAGGACGAGTATACACAATTTGCATAAATGTTTAAGCTCCCCCAGCAAATTGAGTTTAGACTCAaaagtgaaatattttttttcaggCTACCTGTTCTGTCAACGAACATGGTTTCATGTCCAGTTAGCTTTCAATCTATGATCCTATTATTGCTGTCAAGGTAGTTTTTTGTATATTTCTTTTTTATTTGGGGGGGATTTCTTTCCTATTTCATTCAACCATAAATGAAGAAAGAGATGGTTTTGATTTCATCATCTCCAGATACTGCATAATAGCCTCCGCCCCAATGTTTGTCTGCTTCTTTCTCAACATTGATGGGTTGTATCTGTCTCAGCGGCTCAGGTAGAACAATGTGTTGGTTTCTTCCCACGTGTCTGTTTTATATCAAaattgtttgtattttttttttttatagattgTTGATATAGTTTCTAATAAAGAATGTTTGTGATGAATTGAAACTCTAAATACGTTATCAGATTTGAAATGTCAAATTCTGTTTCAGTGAGGCTAATGATCAT

Function

symbol description
gemin8 Predicted to be involved in spliceosomal snRNP assembly. Predicted to be part of SMN complex. Orthologous to human GEMIN8 (gem nuclear organelle associated protein 8).

NR:

description
gem-associated protein 8-like

GO: NA

KEGG:

id description
K13136 GEMIN8; gem associated protein 8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036952263.1 False 1633 mRNA 0.48 4 20969280 20979259
XM_036952262.1 False 1693 mRNA 0.47 5 20976499 20979259
XM_021571255.2 True 1716 mRNA 0.47 5 20976683 20979259

Neighbor

gene id symbol gene type direction distance location
LOC118941068 adcy10 coding upstream 69173 20890709 ~ 20900107 (+)
gcg1 gcg1 coding upstream 78988 20887451 ~ 20890292 (+)
LOC110497094 LOC106575296 coding upstream 84047 20872500 ~ 20885233 (+)
LOC110495798 LOC106575297 coding upstream 113637 20786069 ~ 20855643 (+)
LOC110495797 LOC106574564 coding upstream 272949 20663411 ~ 20696331 (+)
LOC110495811 LOC106574403 coding downstream 790 20980049 ~ 21013013 (+)
LOC110495817 LOC106574411 coding downstream 197366 21176625 ~ 21257700 (+)
LOC110495818 LOC106574413 coding downstream 317937 21297196 ~ 21333742 (+)
LOC110495820 LOC106574417 coding downstream 947394 21926653 ~ 21939273 (+)
LOC110495821 LOC106575277 coding downstream 1140518 22119777 ~ 22125450 (+)
G1525436 psde non-coding upstream 12169 20955877 ~ 20957111 (+)
G1525392 NA non-coding upstream 72158 20896918 ~ 20897122 (+)
G1525384 NA non-coding upstream 82339 20886728 ~ 20886941 (+)
G1525377 NA non-coding upstream 103020 20865901 ~ 20866260 (+)
G1525406 NA non-coding downstream 42510 21021769 ~ 21022152 (+)
G1525460 NA non-coding downstream 46644 21025903 ~ 21026132 (+)
G1525462 NA non-coding downstream 48710 21027969 ~ 21028343 (+)
G1525463 NA non-coding downstream 50390 21029649 ~ 21029900 (+)
G1525464 NA non-coding downstream 50780 21030039 ~ 21030542 (+)
G1525320 NA other upstream 211868 20756691 ~ 20757412 (+)
G1524181 LOC106574559 other upstream 485567 20473360 ~ 20483713 (+)
G1524124 LOC106574554 other upstream 662376 20305705 ~ 20306904 (+)
LOC110495784 LOC106574551 other upstream 734100 20206484 ~ 20236753 (+)
LOC110495776 LOC106574545 other upstream 892968 20065965 ~ 20110618 (+)
LOC110497098 LOC106574424 other downstream 1620154 22599016 ~ 22641368 (+)
G1528194 NA other downstream 2179574 23158833 ~ 23161291 (+)
LOC110495887 LOC108430494 other downstream 3541476 24520697 ~ 24525649 (+)
G1530367 NA other downstream 4025502 25004761 ~ 25005609 (+)
LOC110495895 LOC106574270 other downstream 4169724 25133210 ~ 25157338 (+)

Expression


Co-expression Network