LOC100136027


Basic Information

Item Value
gene id LOC100136027
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 21070882 ~ 21073322 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124350.1
CGAAGCCTGGAGAAGTACAATTAGTCAATCAGTCCCAACTTTGATTCTTCGCAATCATGTCTGACAAGCCAAATCTCGAGGAGGTCGCCAGCTTCGACAAGACCAAGCTGAAAAAGACCGAGACGCAGGAGAAGAATCCGCTGCCGACTAAAGAAAcCATTGAACAGGAGAAGCAGGCGTCGTCGTGAAGACCATCCCTCCGTCATGCACTGTACACCCCCTCCTCCTGCATTGCCTTCTTTTCACTCACTTCTTTTTAGCTGTATAACTTGTCAAGAGAAAACCGACCAACAACACAAAGCTGCACTGCGATGGATGACCATCCATGTCcaggagctgaccccgcccctcctaccacctccaccaATAGAGGAGCAGGCCCTCGCCTAGCCAGGCCAGGAATGAGGAAGTACTACCAACCAACCAGGGGCGGTACGGTGAACGGTAGCAAAGTTGTCGGGTGTGGTGTCCAAACATCAACACGGGGTAGAGAGGGCTACAGGATGTGGGCGTGGCCTTGGATCTAGGAAGTTGCGTCTCTCGTTCGACATCCAATTTCCTGTGTGGCCTCTTGTCGACCTGGTAACACACGCCCCAACGGTCTCCGGCTTTTTATATTTTAGTTTCGGAAAAATGCAAaacctttttttgtttttacactggtAATATGATTAACATACCCATCGGTTAATACAAGTTTTCtgtcagatattttttttatcgAACCAAGGATGAAAAAACATAATCCATCTAGTCTTGGGAGATACTCGCGTGGACTTTATTTACGTTGATGTTTTTAAAACGTTTATTGTACGGTGACCTTTTTTATCGATGTGATTTGGGATAAGCTTTTTGTGTTGCACCCTGTCTCTGAATTGTTTAATATTGTAAGGAAAAAAGATCATTACTGGAAATTAATTCCATGTGTTCTGCAGTCGATCAAATTATTTGGAGTTTTCTAAATTCCCAGCAGTCATGTTAATCTACCACATACCATTACCAATAATGGAAACAGTGAAATGTTGTAATAAAAAAACAATTTGTTTCTA
>TU1746757
GCATATTGCTCAGTATATCTCCTATGCTTGCGCAAAGGCGGGACACACTGCTGCAACGCGAAGCCTGGAGAAGTACAATTAGTCAATCAGTCCCAACTTTGATTCTTCGCAATCATGTCTGACAAGCCAAATCTCGAGGAGGTCGCCAGCTTCGACAAGACCAAGCTGAAAAAGACCGAGACGCAGGAGAAGAATCCGCTGCCGACTAAAGAAAcCATTGAACAGGAGAAGCAGGCGTCGTCGTGAAGACCATCCCTCCGTCATGCACTGTACACCCCCTCCTCCTGCATTGCCTTCTTTTCACTCACTTCTTTTTAGCTGTATAACTTGTCAAGAGAAAACCGACCAACAACACAAAGCTGCACTGCGATGGATGACCATCCATGTCcaggagctgaccccgcccctcctaccacctccaccaATAGAGGAGCAGGCCCTCGCCTAGCCAGGCCAGGAATGAGGAAGTACTACCAACCAACCAGGGGCGGTACGGTGAACGGTAGCAAAGTTGTCGGGTGTGGTGTCCAAACATCAACACGGGGTAGAGAGGGCTACAGGATGTGGGCGTGGCCTTGGATCTAGGAAGTTGCGTCTCTCGTTCGACATCCAATTTCCTGTGTGGCCTCTTGTCGACCTGGTAACACACGCCCCAACGGTCTCCGGCTTTTTATATTTTAGTTTCGGAAAAATGCAAaacctttttttgtttttacactggtAATATGATTAACATACCCATCGGTTAATACAAGTTTTCtgtcagatattttttttatcgAACCAAGGATGAAAAAACATAATCCATCTAGTCTTGGGAGATACTCGCGTGGACTTTATTTACGTTGATGTTTTTAAAACGTTTATTGTACGGTGACCTTTTTTATCGATGTGATTTGGGATAAGCTTTTTGTGTTGCACCCTGTCTCTGAATTGTTTAATATTGTAAGGAAAAAAGATCATTACTGGAAATTAATTCCATGTGTTCTGCAGTCGATCAAATTATTTGGAGTTTTCTAAATTCCCAGCAGTCATGTTAATCTACCACATACCATTACCAATAATGGAAACAGTG

Function

NR:

description
beta thymosin

GO:

id name namespace
GO:0042989 sequestering of actin monomers biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003779 actin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124350.1 False 1049 mRNA 0.44 3 21070882 21073264
TU1746757 True 1075 lncRNA 0.45 3 21070914 21073322

Neighbor

gene id symbol gene type direction distance location
LOC110495812 LOC106574405 coding downstream 42591 21018546 ~ 21028291 (-)
LOC110495807 LOC106574402 coding downstream 93884 20968247 ~ 20976998 (-)
LOC110495808 psde coding downstream 103962 20955879 ~ 20966920 (-)
LOC110495806 LOC106574400 coding downstream 115037 20949130 ~ 20955845 (-)
LOC110495804 LOC106574399 coding downstream 123496 20900502 ~ 20947386 (-)
LOC110495813 prps2 coding upstream 1921 21075185 ~ 21088022 (-)
LOC110495814 LOC106574409 coding upstream 16089 21089235 ~ 21107524 (-)
LOC110495815 LOC106574410 coding upstream 91314 21164578 ~ 21173972 (-)
LOC118941122 LOC106610709 coding upstream 149547 21222811 ~ 21227447 (-)
LOC110495819 LOC106575280 coding upstream 733130 21806394 ~ 21812566 (-)
G1525657 NA non-coding downstream 27599 21043055 ~ 21043283 (-)
G1525655 NA non-coding downstream 29699 21040776 ~ 21041183 (-)
G1525654 NA non-coding downstream 30119 21040451 ~ 21040763 (-)
G1525653 NA non-coding downstream 30857 21039689 ~ 21040025 (-)
G1525651 NA non-coding downstream 36622 21034026 ~ 21034260 (-)
G1525723 NA non-coding upstream 81604 21154868 ~ 21155103 (-)
G1525867 NA non-coding upstream 138534 21211798 ~ 21213206 (-)
G1525915 LOC106574411 non-coding upstream 181981 21255245 ~ 21257699 (-)
G1525918 NA non-coding upstream 189178 21262442 ~ 21262669 (-)
LOC110497093 LOC106574562 other downstream 499015 20558557 ~ 20595753 (-)
G1524755 LOC106581475 other downstream 1340814 19722745 ~ 19730068 (-)
LOC110495764 LOC106574529 other downstream 1493782 19573628 ~ 19577133 (-)
G1524473 LOC106574589 other downstream 1906756 19143985 ~ 19164126 (-)
G1524311 NA other downstream 2321487 18749125 ~ 18749395 (-)
G1527230 NA other upstream 1188792 22262056 ~ 22262462 (-)
G1528018 NA other upstream 1798781 22872045 ~ 22885833 (-)
LOC110495841 LOC106574435 other upstream 2086294 23008547 ~ 23168591 (-)
LOC110495851 LOC106574449 other upstream 2408276 23479558 ~ 23541681 (-)
LOC110495852 LOC106574460 other upstream 2469342 23542411 ~ 23543631 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_037477 tmsb4x coding NC_007120.7 CM002893.2 54178475 ~ 54180059 (+)
grasscarp (Ctenopharyngodon idella) G205294 NA non-coding CI01000049 null 192816 ~ 195338 (+)
eurasian perch (Perca fluviatilis) G171949 NA non-coding NC_053128.1 CM020925.1 1333823 ~ 1371734 (-)
tiger barb (Puntius tetrazona) LOC122348417 NA misc NC_056705.1 CM032074.1 3735895 ~ 3738165 (+)