LOC110495815 (LOC106574410)


Basic Information

Item Value
gene id LOC110495815
gene name LOC106574410
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 21164578 ~ 21173972 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571267.2
ACCAAACTAGATATTCCCTATTACGGATTCGTTTGATGAGTTGTGTCCTAGCGCCATCTCCATATTTTTTTTCAAAGACCCCTTTGGATACAGCCCGGCAGGGAAAGGGTTAAGGAGCGGGGGGTCCAGATGCCTCCTCTCCTGCTCGCTATGACGAACAAATGAACTCCCGGGGAATGAAATTTAAATTCCACAAAGGAGAAAAAGTCCTCTGTTTCGAACCTGACCCTACGAAAGCTAAAGTACTCTATGATGCAAAGGTCGTCGATGTTGTAATTGGCAAAGATGAACGTGGAAAGCGAGTCCCAGAATACCTGATTCACTTCAATGGTTGGAACAGAAGTTGGGATCGATTGGCAGCGGAAGACCATGTGCTCAGGGAAACTGACGAAAATCGCAAATTACAACGTAAACTGGCTCGTAAAGCTGTGGCTCGCATGAGGAGAAAGGGATGGGGGAAGAGACGTCGTCGTCTACCCGGTGTTGAGTCAGCTCTGAAGACACTTccagaagagaaggaagagagtgaTGACGCATGTTTGATTACGTCTTCAGACAACAGTGACGAGGACGATTCTGAGGATCCGGAGTCTTTGAAAAGCGAGGAGAGCGACTCTTCTGAAGATTTGGACAAAATGCAGGAAGAGCAGGAAGCTCACGCTAAGATGGAGAGTGAGGACAAGACCATCAACATAGACATCCCTGAGGTTCTCAAGAAGAAACTGGAGGATGACTGCTACTACATCAACAAGAGGAAGAAGTTGGTGAAGCTTCCGTGCCAGATGAACATATTGAACATCTTGGAATCATATGTGAAGCACTTTGCCTTCAACGCAGCCTTCTCTGCCAATGAGAGGTACAGAAGTCACCAGAGCACCGCCCAGACTAGCCTCAGTCCTCACTATGTTCCTCCAGAGAAGAATGAGGAGCTTTGCAAGGAGATGGTGGACGGCCTGAGAATCACCTTTGACTTCACCCTTCCCATGATCCTCCTGTACCCCAACGAGCACGCTCAGTTCAAGAAAGTCAGCTCCTCCAAGTTTTTCCTGCCTATCCGGGACAACACAGCCAGCTCCAGCAAGACCCTGCGTGAGCGCACCCCCAGCCCCTCGGGCCACAACCCATCCACCCCCCAGTCCACGGACAGCCAACCGGCCCTGAGTGAGGCCTCCACCACCACGGCAaaccccaccaccacacccaaACGCCGGCGCTGTGCCTCCGCAGCCGACCCCGACGCCCCCCAGTCCCTGCGACGCTCCACACGCCACACTTCGGGGGGCGAGCGGATGGCGGGCGAGGGGGGCAGCGGCAGCGCTACGACCTCACCCCAGCCCAAACGCCGCCTTGACACGCCTGCCCAGCTGCCCAAGTTCTTCCTCAATCTGGAGAAGAAAACTCCTGTCCACAGTGGCTCGTCCTCTCCTTTGCCCCAGACGCCCAGTAAAGAGGGCAGTGGCGTCTTCTCCGGCCTGGAGAGCCGACGGAACAATGAGCTCAACGAGGTCCTGAGCTGGAAGCTGACCCCTGATAACTATCCCCAGAGTGACCAGCCTCCCCCACCCTCCTACCTGTACGGCTCACAGCACCTCCTACGCCTCTTCGTGAAGCTGCCAGAGATCCTAGGGAAGATGCAAATCCCAGAGAAGAacctaagggccctggtcaaacaccTGGAGCTCTTCCTCAGGTTTTTGGCTGAGTTCCACGAGGACTTTTTTCCGGAGTCGGCGTACGTGTCGTCATCGGAGGCCCAATACTGCATGAAGCACCCGCGGGCTGTTTCCTGACCCCGTTTATCTCACCCTGCCTCGCCCTGAACTGCACTGCTGGGAGGGGAGCTCCAAGCTGATTCCCAAACCATCCCTTTCACATCCTCTCTTAGACTGCGCCATTATCCCTCTATGTTCACCCCTTGCTCGCCTAAATCCAACCCATGCGGCTATGTGGTTTTGCCCGGCCTATCGTAAAGAAATAAAGCAAGGGTCTTGGCTTCTGATCGGCCCAGTACCTCACGCTCCCCAGACCCCAACCTGGCAGTCTGGCCTTAGGAACAGACCCCCCTGGATGCAATGATTACCCAAAGCATGGACGTCTACTTGTTATCCTAGGCTGTAGACCCTAACCCCCTGCTGGGGTCTTTCCCCCGATGCTGACTTTGTCTTGCTTTCTCGCTCTGCGCTCAAGGACCACGTTtggccctctctttctctagcagCATCTGCGTCTGATCCTTCTCTCTCCGTCCGCCTAGACAAGCATACACAGAGAGAAGGGCTATTTGATACGTTTGCTTTACGCGTGGCTATTGGAGACTGTTTGGCTTCTCCTCGGTTCGCCATGCTTGCTGCCCCAAGCCACGCTTCAGTGTGTGTTGTCGATTTAAGCTATTTCTAAATGCTTGTAGAATGTCATTACTCTAGTAATGTCTACTATCTGTGTTCCTCTTGCTTAGAGGGGCTGTGACGTTATGGGCACTGTGTGTTCATATTTATATTTGTCATGGCATTACCCTCAATGTTTGAAGAAGGTCAAGTTGATGTATAAATTCCTTATTCTGTTTGTTTTATTACACTGTTAACTTGTAGACTTGAACAGGAACCCACTGCGGAGGTGGAAATGTAAAAAGATATCAcctttcagtctgttttctattACTATTATCTGAAATAAAAGTTGGAGCAATGTT
>XM_021571268.2
ACCAAACTAGATATTCCCTATTACGGATTCGTTTGATGAGTTGTGTCCTAGCGCCATCTCCATATTTTTTTTCAAAGACCCCTTTGGATACAGCCCGGCAGGGAAAGGGTTAAGGAGCGGGGGGTCCAGATGCCTCCTCTCCTGCTCGCTATGACGAACAAATGAACTCCCGGGGAATGAAATTTAAATTCCACAAAGGAGAAAAAGTCCTCTGTTTCGAACCTGACCCTACGAAAGCTAAAGTACTCTATGATGCAAAGGTCGTCGATGTTGTAATTGGCAAAGATGAACGTGGAAAGCGAGTCCCAGAATACCTGATTCACTTCAATGGTTGGAACAGAAGTTGGGATCGATTGGCAGCGGAAGACCATGTGCTCAGGGAAACTGACGAAAATCGCAAATTACAACGTAAACTGGCTCGTAAAGCTGTGGCTCGCATGAGGAGAAAGGGATGGGGGAAGAGACGTCGTCGTCTACCCGGTGTTGAGTCAGCTCTGAAGACACTTccagaagagaaggaagagagtgaTGACGCATGTTTGATTACGTCTTCAGACAACAGTGACGAGGACGATTCTGAGGATCCGGAGTCTTTGAAAAGCGAGGAGAGCGACTCTTCTGAAGATTTGGACAAAATGGAAGAGCAGGAAGCTCACGCTAAGATGGAGAGTGAGGACAAGACCATCAACATAGACATCCCTGAGGTTCTCAAGAAGAAACTGGAGGATGACTGCTACTACATCAACAAGAGGAAGAAGTTGGTGAAGCTTCCGTGCCAGATGAACATATTGAACATCTTGGAATCATATGTGAAGCACTTTGCCTTCAACGCAGCCTTCTCTGCCAATGAGAGGTACAGAAGTCACCAGAGCACCGCCCAGACTAGCCTCAGTCCTCACTATGTTCCTCCAGAGAAGAATGAGGAGCTTTGCAAGGAGATGGTGGACGGCCTGAGAATCACCTTTGACTTCACCCTTCCCATGATCCTCCTGTACCCCAACGAGCACGCTCAGTTCAAGAAAGTCAGCTCCTCCAAGTTTTTCCTGCCTATCCGGGACAACACAGCCAGCTCCAGCAAGACCCTGCGTGAGCGCACCCCCAGCCCCTCGGGCCACAACCCATCCACCCCCCAGTCCACGGACAGCCAACCGGCCCTGAGTGAGGCCTCCACCACCACGGCAaaccccaccaccacacccaaACGCCGGCGCTGTGCCTCCGCAGCCGACCCCGACGCCCCCCAGTCCCTGCGACGCTCCACACGCCACACTTCGGGGGGCGAGCGGATGGCGGGCGAGGGGGGCAGCGGCAGCGCTACGACCTCACCCCAGCCCAAACGCCGCCTTGACACGCCTGCCCAGCTGCCCAAGTTCTTCCTCAATCTGGAGAAGAAAACTCCTGTCCACAGTGGCTCGTCCTCTCCTTTGCCCCAGACGCCCAGTAAAGAGGGCAGTGGCGTCTTCTCCGGCCTGGAGAGCCGACGGAACAATGAGCTCAACGAGGTCCTGAGCTGGAAGCTGACCCCTGATAACTATCCCCAGAGTGACCAGCCTCCCCCACCCTCCTACCTGTACGGCTCACAGCACCTCCTACGCCTCTTCGTGAAGCTGCCAGAGATCCTAGGGAAGATGCAAATCCCAGAGAAGAacctaagggccctggtcaaacaccTGGAGCTCTTCCTCAGGTTTTTGGCTGAGTTCCACGAGGACTTTTTTCCGGAGTCGGCGTACGTGTCGTCATCGGAGGCCCAATACTGCATGAAGCACCCGCGGGCTGTTTCCTGACCCCGTTTATCTCACCCTGCCTCGCCCTGAACTGCACTGCTGGGAGGGGAGCTCCAAGCTGATTCCCAAACCATCCCTTTCACATCCTCTCTTAGACTGCGCCATTATCCCTCTATGTTCACCCCTTGCTCGCCTAAATCCAACCCATGCGGCTATGTGGTTTTGCCCGGCCTATCGTAAAGAAATAAAGCAAGGGTCTTGGCTTCTGATCGGCCCAGTACCTCACGCTCCCCAGACCCCAACCTGGCAGTCTGGCCTTAGGAACAGACCCCCCTGGATGCAATGATTACCCAAAGCATGGACGTCTACTTGTTATCCTAGGCTGTAGACCCTAACCCCCTGCTGGGGTCTTTCCCCCGATGCTGACTTTGTCTTGCTTTCTCGCTCTGCGCTCAAGGACCACGTTtggccctctctttctctagcagCATCTGCGTCTGATCCTTCTCTCTCCGTCCGCCTAGACAAGCATACACAGAGAGAAGGGCTATTTGATACGTTTGCTTTACGCGTGGCTATTGGAGACTGTTTGGCTTCTCCTCGGTTCGCCATGCTTGCTGCCCCAAGCCACGCTTCAGTGTGTGTTGTCGATTTAAGCTATTTCTAAATGCTTGTAGAATGTCATTACTCTAGTAATGTCTACTATCTGTGTTCCTCTTGCTTAGAGGGGCTGTGACGTTATGGGCACTGTGTGTTCATATTTATATTTGTCATGGCATTACCCTCAATGTTTGAAGAAGGTCAAGTTGATGTATAAATTCCTTATTCTGTTTGTTTTATTACACTGTTAACTTGTAGACTTGAACAGGAACCCACTGCGGAGGTGGAAATGTAAAAAGATATCAcctttcagtctgttttctattACTATTATCTGAAATAAAAGTTGGAGCAATGTT

Function

NR:

description
male-specific lethal 3 homolog isoform X2

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG:

id description
K18403 MSL3; male-specific lethal 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571267.2 False 2689 mRNA 0.52 12 21164578 21173972
XM_021571268.2 True 2686 mRNA 0.52 12 21164578 21173972

Neighbor

gene id symbol gene type direction distance location
LOC110495814 LOC106574409 coding downstream 57054 21089235 ~ 21107524 (-)
LOC110495813 prps2 coding downstream 76556 21075185 ~ 21088022 (-)
LOC100136027 NA coding downstream 91314 21070882 ~ 21073322 (-)
LOC110495812 LOC106574405 coding downstream 136287 21018546 ~ 21028291 (-)
LOC110495807 LOC106574402 coding downstream 187580 20968247 ~ 20976998 (-)
LOC118941122 LOC106610709 coding upstream 48839 21222811 ~ 21227447 (-)
LOC110495819 LOC106575280 coding upstream 632422 21806394 ~ 21812566 (-)
LOC110495824 LOC106575275 coding upstream 1290224 22464196 ~ 22477509 (-)
LOC110495825 LOC106574420 coding upstream 1339249 22513221 ~ 22522015 (-)
LOC110495827 LOC106574421 coding upstream 1364015 22537987 ~ 22590992 (-)
G1525723 NA non-coding downstream 9475 21154868 ~ 21155103 (-)
G1525657 NA non-coding downstream 121295 21043055 ~ 21043283 (-)
G1525655 NA non-coding downstream 123395 21040776 ~ 21041183 (-)
G1525867 NA non-coding upstream 37826 21211798 ~ 21213206 (-)
G1525915 LOC106574411 non-coding upstream 81273 21255245 ~ 21257699 (-)
G1525918 NA non-coding upstream 88470 21262442 ~ 21262669 (-)
G1525965 NA non-coding upstream 156862 21330834 ~ 21331613 (-)
G1525964 LOC106574413 non-coding upstream 157935 21331907 ~ 21333717 (-)
LOC110497093 LOC106574562 other downstream 592711 20558557 ~ 20595753 (-)
G1524755 LOC106581475 other downstream 1434510 19722745 ~ 19730068 (-)
LOC110495764 LOC106574529 other downstream 1587478 19573628 ~ 19577133 (-)
G1524473 LOC106574589 other downstream 2000452 19143985 ~ 19164126 (-)
G1524311 NA other downstream 2415183 18749125 ~ 18749395 (-)
G1527230 NA other upstream 1088084 22262056 ~ 22262462 (-)
G1528018 NA other upstream 1698073 22872045 ~ 22885833 (-)
LOC110495841 LOC106574435 other upstream 1985586 23008547 ~ 23168591 (-)
LOC110495851 LOC106574449 other upstream 2307568 23479558 ~ 23541681 (-)
LOC110495852 LOC106574460 other upstream 2368634 23542411 ~ 23543631 (-)

Expression


Co-expression Network