LOC118941122 (LOC106610709)


Basic Information

Item Value
gene id LOC118941122
gene name LOC106610709
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 21222811 ~ 21227447 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005037408.1
GTTGCCAATACATTTGAGTTTATTCTAAAGAAACAAGACCTTGGTGTGCAGGAGATTTGTTTACCCCAAGACCCAAATCGTGATGGATGGGACAGTGACATGTCATCTATTTTGGTCCTTGTCCACCTTCTGCCACCGTCACCTCATGGAAGCAAGAGACCAGGAAAAACCTCATCCAGACACGCCAGTGACCACATTGTGAAGTTTATCAAGACTGGGACCAGCATCCAGGGGCATCTGGAGAGCATCACGGAAAGCCTTCAACCCTACCTGCTTGCTGTGGGGACCCAGAGGAGTGTGACTCACAAGTACTTCATTGTGATTGACAAACATGCAATACCTTGTATGTCAGCAGACTCTCTTGCCTGTTTTGATGAGCTTTTCAAAGCTAATTTTGTCTTCGGTACATGCGTACAACCAGGATCTGATAAATGTGTGCAACTTCTTGCTAACCACAATTTATGAAATTGATGTTGATACCGCTAAGGTTAATCCTAGGGTTGCAGAGTTGAGGGCTCGGATGCTGCTTTGAGTTACCGTATGACATTTTTTTTTGAAACACTTAATCGCAGAACACCACGGGTCATTCAAGCAATTTTTTCCGAAAAAGAGGCTGCTACCGAAGCATCATTTTATGGTGCATTACCCCAAATTGGACCGGTTTTGCATAGCTGGTGCATGCGCTATGAGGCTAAGCATAATgtctttttaaaaaatgaaaaagttTTAATAAATGTAACTAaaacattggcaaaaaaacacTGAAGTAGCATACAGTTGGCAGACAATTGGCATCAACAGTCATGATCGATCCAGGTAAAATGTTATCTTTAAATGTGGTAGAATGACACCATGGTTTTGAATATTAAATGGGCCAAAAACCATGGAAATATGTATCGTTCAGGTTTAGTTGTTTGTCTTAAAGTTCATTGTGAGATGCAAGTTTTTCAGAAAATCCACCATGTTGTTGTTAACGATGAGAGGTTACTGGTTGGTTACATTTGCCCTACAAAACAATATGTCTTGATGAGCAATTTTAATGCATATAGAGTTGGGTGTACAACAGAGGGACCTTATGTAGTTGATGTTAAAGAGCTTTTCTGTCACAAAGCATTTGATGTACAGATGTCTTACAGCTGTGACGATTCAACTTTGTTTATTGTCCCATACTGTTTCCTGTGATTCTAAAAACTGCACAGTAAGCTCTTTAAAACCAAGATGTATTGTATTGCAATATAGGCTTTTTTTAATTTACTTTTAATACAGGGGGGACAGATGCCAAAATGGCATTTTACAGAGGCCACAATTTTATTTTATCATCAGTGTTTTTGATGTGCGAGACGCCAGTTTCACAAGAGCCTCCATGTCATTTTTAGATGTATTGAATTTCAATATTGAGCTTTTTTTCTATGTACAAGTATTAAAGTGAaccatttcatttcatttcatttaaaGTGGCCAACATTTCATTTCAGtccacaattgtattttattatcATCAGTATTTTGATGTGTGTACTGCAAGAgtcttacatttaagaata

Function

NR:

description
PREDICTED: uncharacterized protein LOC106610709

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005037408.1 True 1544 mRNA 0.38 3 21222811 21227447

Neighbor

gene id symbol gene type direction distance location
LOC110495815 LOC106574410 coding downstream 48839 21164578 ~ 21173972 (-)
LOC110495814 LOC106574409 coding downstream 115287 21089235 ~ 21107524 (-)
LOC110495813 prps2 coding downstream 134789 21075185 ~ 21088022 (-)
LOC100136027 NA coding downstream 149547 21070882 ~ 21073322 (-)
LOC110495812 LOC106574405 coding downstream 194520 21018546 ~ 21028291 (-)
LOC110495819 LOC106575280 coding upstream 578947 21806394 ~ 21812566 (-)
LOC110495824 LOC106575275 coding upstream 1236749 22464196 ~ 22477509 (-)
LOC110495825 LOC106574420 coding upstream 1285774 22513221 ~ 22522015 (-)
LOC110495827 LOC106574421 coding upstream 1310540 22537987 ~ 22590992 (-)
LOC110497099 NA coding upstream 1453210 22680498 ~ 22690348 (-)
G1525867 NA non-coding downstream 9605 21211798 ~ 21213206 (-)
G1525723 NA non-coding downstream 67708 21154868 ~ 21155103 (-)
G1525657 NA non-coding downstream 179528 21043055 ~ 21043283 (-)
G1525915 LOC106574411 non-coding upstream 27798 21255245 ~ 21257699 (-)
G1525918 NA non-coding upstream 34995 21262442 ~ 21262669 (-)
G1525965 NA non-coding upstream 103387 21330834 ~ 21331613 (-)
G1525964 LOC106574413 non-coding upstream 104460 21331907 ~ 21333717 (-)
G1525973 NA non-coding upstream 116923 21344370 ~ 21344571 (-)
LOC110497093 LOC106574562 other downstream 650944 20558557 ~ 20595753 (-)
G1524755 LOC106581475 other downstream 1492743 19722745 ~ 19730068 (-)
LOC110495764 LOC106574529 other downstream 1645711 19573628 ~ 19577133 (-)
G1524473 LOC106574589 other downstream 2058685 19143985 ~ 19164126 (-)
G1524311 NA other downstream 2473416 18749125 ~ 18749395 (-)
G1527230 NA other upstream 1034609 22262056 ~ 22262462 (-)
G1528018 NA other upstream 1644598 22872045 ~ 22885833 (-)
LOC110495841 LOC106574435 other upstream 1932111 23008547 ~ 23168591 (-)
LOC110495851 LOC106574449 other upstream 2254093 23479558 ~ 23541681 (-)
LOC110495852 LOC106574460 other upstream 2315159 23542411 ~ 23543631 (-)

Expression


Co-expression Network