LOC110495820 (LOC106574417)


Basic Information

Item Value
gene id LOC110495820
gene name LOC106574417
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 21926653 ~ 21939273 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571277.2
CGGAGCTTTCCGTGGCTCAAAAGCATGTAAATTATAAGGAACTATGCGAAGGGTCAGTATACCAAATAGACTCTGCAGTTACACTCACACTTTAGGGGCTGGTAACTAAGCGCGCAAGAAGTTAACAGAGAGGACTGACCAGGGAGACTAATAAGGATCTACATTAATTAATTACAGATAAAGTGGAAAGGCCAACACATCCCAAAATTGCCTCGGACTAGGCTCGTGTCGGGTGGAACACTTTGCAATATCATGGAAATATCGGATTTGTAAATGCCGACAGTCTTCTACAAAAACAAGAGGGTACAAAAGTAAACGTTAGTTACACCGGTATGCCTAGTCTATTCTCTAAAGAAGATGCTGTGACGTTTAATTAAACAGTTTGAGGGCACTTTTGATGCCTCGCATCCTTACGTCTCCACATGGATCAACCTCTCTACCCCAAGCATCCTTTGGATTAGCCACAGTCTTTCTCACTCTGCACAACGGATTCAACGGACAGAAAATGCTACCCTGCATCGTTTTCCTTTGCTCATTTTTCACTGCTGCGTGTTTCCAAGACATCCAGCCCTCCAAGGCATTTCTGGCTGAATCCTGTGACTCATTGTGTACTTGTGAAGAAAAAGATGGCATCCTGTATCTTAACTGTGAGGAGAGAAATATCAGCAAGATCTCCCAAATCAAAGTGCCATCAGCTCTACCTTTCCACCTAAATCTGTACAAAAATGACTTGGTGGAGTTGCAGGCAGAAGACTTGGAACATTTAAAGAATGCCGTTTCACTTCATCTCGGGGCTAATAGCATACAAGAGCTTGAACCTGGCGTCTTTAGTGCACTGGGCTCCTTGAAGAAGCTCCACATCAACAGTAATTTCCTGGTCATGTTGAAGGAAGACACTTTTCACGGCTTGGTAAATTTGGAGTTTCTCCAGGCGGACACAAACTTCATCCGCGTGGTTGAGCCGGGGGCATTCAGCAAACTCATCCGCCTCAAAGTTCTGATCCTCAACGACAATGCCATCGAGTTTCTTCCCAGCAATATTTTCCGGTTTGTTCCACTCACCCACTTGGACCTGCGGGGGAACCAGTTACAGACCCTGCCGTACGTTGGCTTCCTGGAGCACATTGGGCGGATCATGGAGCTTCTTCTGGAGGACAACGACTGGATGTGCGATTGTGAGATCCTTCACCTGAAGATCTGGATGGAGAACATGCGGGCCCAGTCGGCCATTGGGGAGGTGGTCTGCAGCAGCCCCCAACACCTCAGGGGCACCATCCTGGCCAAAATCAAACGGGATGTTCTCTGCCCTTCTCATGCCGATATCAACTTAGAGGAGCCTTCCAAGTCACTGGACATGGTGGTCACTCCGTCTTCCAAAGTGGTAGAGATTCCGAAGTTGGAGGCCGCCAAGGACGACGCAAAGGTTCCGACACCTGCTTATGTTCCAGGGAGTCCTTGTGTGGAGCACTGTTCTTGTCACAATCACCCGGTGGCTGGGTTTTTAATGCATTGTCAGGACAGAGGAATTCAACGGATTTCAGATATTGGAATACTTGAGCAAAGCCCCACCAAGCTGGTGCTTACAGGAAATATGATTCAGAGACTGTTGAAATATGACTTTGTCACATATGACAGTTTGGAGTTATTGAATTTAGCCAACAATCGAATCGATTACGTTGACAATGAAACTTTTCTCAGCTTAAGCAATTTGAAAAAACTTTATCTCAACGGCAACAGAATTGAAACCCTTTCCGCGACCATGTTCATTGGACTCCACAACCTTGAATACCTATATTTGGAATATAACATTATCAAAGAAATTGTTCCAGGAGCTTTTAATCCTTTGTCTAATCTCAAACTCTTGTCTTTGAATAACAATctgctgactagtctcccattgcAGATATTTCGCAATGTGCCCCTCACCAAACTGAACCTGAGAAAAAATCTGCTCGTGCACCTGCCTGTTAGCAACGTGCTGGACCAGCTTGACTCTTTAGAGCAGATTTATTTAGAGGACAACCCCTGGGACTGCAGCTGTGACTTAGTCAGTCTCAAACAGTGGGTTGAGAAGCTGAGGAAGGACACAGTCATAGGTTCCATTTTGTGTCACACACCGAGAAAAGTGGCGAAGGCTGAGCTGAGAGCCCTCAGAAATGAGTTGCTGTGCCCCGGCCTAGTGACCTACTCCTTGCCCACGGACGAGGACGAGAGCGTGACAACCACAGTGGCGACTGACGGCGCTAGGAGCGGTTTCTTCAGCTCCATCACAGACTCAGTTCCACTCTCCGTTCTGATCCTTAGCTTGCTCGTCATCTTCCTCATGGTCATCTTCTGTTCGGCGGGGATCGTGGTTTTCCTAGTGCACAGACGGCGAAGGAGGGTGAAGAAGAAACAGGCGGAGGAGCAGCCGCGGGAGAGCAGCAGCCCCATCCACCTGCAATACAGCATGTACGGCCAGAAAACCACCCACCACACACTGGCGCAGAGGACCGGAAGCACCGTATACGACGAGCGCTCACACAGCCCCATCGTCCAGATCTGCCGCAACCCCACCTACTGCACTCAGCATAAAGAATATGAGACCGACCTCAATGAACTGGACGAACCAAAGCACATCTGTCgtagcatcatggagacagagaatACCTCCCCTCTCACAGGCTCTAATTTGAAGTTCAGAGCTGTGACGTCAGACTGCCCAACTGAGTTCGTAACACTCGGAGATGCGAGCTCCCTCTATAAAAACAtactagagagggagagggttagggagCTGCAGCAGCTCGGAATTACTGAATACCTCAGGAAAAACATGTCCCAGCTGCAACCAACGGTAGAAGTGCCAGTCCCAGGATCAGGACACCACGAGGAACTGAAATTAATGGAGACTATTATGTTGTCGAGACCGCGGAAGGTCATGGTGGAACAAACTAAAAATGAGTACTTTGAACTCAAAGCTAACCTACACACCGAGCCAGATTATTTGGAGGTTCTGGAGCATCAAACTGCATTTAACTgatataataatacaattaatGGTTTTATATTCAACTCGAGAAGTGCCTTGTCCAAAACTGCCATCTTATATTTTCACAGTCTAAGACCTACAGTACATATCCCACAGCGGTCTTGGACACACAAGTAATTTGTAGCacagaatgtactgtataattATCTATTTTTTAGTTATTTTGTTTTCCTATAGATAGACCGCACTTGAAGTTGCTGATATAACAGATATCTTGCCCAAATGTAATTATCGGCAAGGCAAATAGGTACTGCGGGGGTAAGTTTTTGTTACCAGTTCAGCTTAGATCTTTGGCAGGCCTCAATGTTTTGCATCAACTCTGTCAGGCTGTTTCAATCATATGCCATAATCAGCATGCTCAATGTGCCGTAGACTCAACAAAATGCCAACATGTATTCTGGGTCGCAATGATGGAGTGCACATTAGTCCTGTCGTTCATTAGATTTACCCCTTGCATTATTTCAATACCACATTTTGTATTCCAACCAGTGGAACATAGCACTTAAAAGTCCCAGTACATATATACATCATATCTTGTATCTGTAAAGAAAAAAATGCATTGCACTAATCAAATGCCATTTAAAAGATGGATCATGACAATCAACTTACTGTTCCAACAACCGTTTCTGTTTATCGTTGTTCCTTTCTTGCTACTGAAGGGGACACAACTACTGATGTGTATAAGAACCTTTTGTTTGAGTGTAATTTTTACAAATCAAAACCGACCAGTTTCTCTCAGCATGATAAATGTTCAGGATATATGTGTTCACTTTATTATTCTGATTGAGTAAGCAACCCCGTTCAACTCTGAAAATGTTTCACGTCAACTTTATTTTTTACCAATGTAGATGAAATTATTTATTCTGTAAATGTTGTATTATATGTCACACATTCTATGTTATTTTGTGCCTTCGGTGTTGTGCAggtgaaaatgtattaaatgtaaatAAAGAATTGCAATACTGCAAACTTTGAA

Function

NR:

description
SLIT and NTRK-like protein 6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571277.2 True 4007 mRNA 0.45 2 21926653 21939273

Neighbor

gene id symbol gene type direction distance location
LOC110495818 LOC106574413 coding upstream 592911 21297196 ~ 21333742 (+)
LOC110495817 LOC106574411 coding upstream 668953 21176625 ~ 21257700 (+)
LOC110495811 LOC106574403 coding upstream 913640 20980049 ~ 21013013 (+)
LOC110495810 gemin8 coding upstream 947394 20969280 ~ 20979259 (+)
LOC118941068 adcy10 coding upstream 1026546 20890709 ~ 20900107 (+)
LOC110495821 LOC106575277 coding downstream 180504 22119777 ~ 22125450 (+)
LOC110495822 LOC106575275 coding downstream 536501 22475774 ~ 22477639 (+)
LOC110495826 LOC106575273 coding downstream 627395 22566668 ~ 22596390 (+)
LOC110497098 LOC106574424 coding downstream 659743 22599016 ~ 22641368 (+)
LOC110495829 LOC106574429 coding downstream 761069 22700342 ~ 22713534 (+)
G1526604 NA non-coding upstream 128100 21798266 ~ 21798553 (+)
G1526601 NA non-coding upstream 130465 21795724 ~ 21796188 (+)
G1526532 NA non-coding upstream 174944 21751449 ~ 21751709 (+)
G1526520 NA non-coding upstream 185816 21740453 ~ 21740837 (+)
G1526304 NA non-coding upstream 299230 21627193 ~ 21627423 (+)
G1526984 NA non-coding downstream 263114 22202387 ~ 22202651 (+)
G1527216 NA non-coding downstream 314383 22253656 ~ 22253890 (+)
G1527235 NA non-coding downstream 327523 22266796 ~ 22267021 (+)
G1527254 NA non-coding downstream 338034 22277307 ~ 22277524 (+)
G1527279 NA non-coding downstream 364496 22303769 ~ 22311636 (+)
G1525320 NA other upstream 1169241 20756691 ~ 20757412 (+)
G1524181 LOC106574559 other upstream 1442940 20473360 ~ 20483713 (+)
G1524124 LOC106574554 other upstream 1619749 20305705 ~ 20306904 (+)
LOC110495784 LOC106574551 other upstream 1691473 20206484 ~ 20236753 (+)
LOC110495776 LOC106574545 other upstream 1850341 20065965 ~ 20110618 (+)
G1528194 NA other downstream 1219560 23158833 ~ 23161291 (+)
LOC110495887 LOC108430494 other downstream 2581462 24520697 ~ 24525649 (+)
G1530367 NA other downstream 3065488 25004761 ~ 25005609 (+)
LOC110495895 LOC106574270 other downstream 3209710 25133210 ~ 25157338 (+)

Expression


Co-expression Network