LOC110495821 (LOC106575277)


Basic Information

Item Value
gene id LOC110495821
gene name LOC106575277
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 22119777 ~ 22125450 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571278.2
acTTTTAAGTTGtcttttcactgtaaggtctacacctgttttattcggcgcatgtgacaaataaaatgtgattagatgtagttaattattttaCCGCATTCAACAGCAGTTCCTATCAGAGAGATAGTAACATTCACCCTGGAGGGCACTCGCATGCTGGGCTTGGTGCAATACACACACCAGGGATTATTATTCTTCATAAAATGCGCAAATTAATCATTAGATGAGGTTATAACCGACCCCCGATTTGGAAACGAGTTGTCTCCAATTCCTTGGCAACGCGTTATGTCGTCTAGtctacttttttttaaacaacagaaGCGGACCTAAAGCAAGGATTCAGTCTAATCAGTAACATGACATAAGGAACGTCGTTTGGAATCCATAACCTTGTTGGCTTTAGAATGGGAATATTATTGGTCAAAAAAAGACAGAACAGATCAACAGCTTTTAGTGTGAACATTTTAACGCTTTCTAGTCCTCTATGTGGATAGATTTTTTTCAGCATTCCCTCAGACGATGGATTTTTTCCATTGCAGCTCAGTAGAGGGTGTGAGATCTTTCTAAGAGCACCGGGCTAGAACGAGCACAGTCTCTGTGTAACCTCTTTGTGATTAAAATCCACCAAAGGAAAGCACTGGAAACAAAAGCATGGAAGACACCGAAAGGTGTGAGGAatgcgtttttttttttgcagtggcAGTGTTATCAGCACTACATCTCGAGCGTCGGGTGTGAATTCAGCACCGAGGGGGAAAGAACAGCACCCACTGCTACCGCAGCACGACGAGAAAAGCACGGATTTATAAAATTTGCAAGGTCAGTCAATACCGATCGAAAGCCCAAAAATGTGTCGACTGCTATTGCGGTTTGTTGTTTTCAATTATTTTCATACCAGCAAAAGGATCCATTCGATCTGAGGCATTCTATATGGTCATTTTAAAGCTGGACGCCTGGACATAACGGGCTAGAAGAGCATGGATATTATAAAGGACTGTCGTCATTTCTTTTAGACCCGTCGGTCTATATTTTTGAGGATAAACTGGACTAAAAAACATTGACTCAACAGCTCGTTTTCATGTCTTGAAATCGGGGATGAATTGTTTGTATTGAAAATGCTGCTTTGGATTGTCTTGCTGAAGGCGGCTCTTTGTGTTGCTATTGGAAATGTTACAAGGGACATTTGTAAGGAGCAGATATGCTCCTGCAATGAGATTGAAGGCGATTTGCACATTGACTGCGAAAAAAGGAGCTTTACTAATTTGCACCATTTGACTGGTCCCAGTTCCCAGTTTTATCACTTGCTATTGCATGGAAATTCTTTATCCAGGCTTTTTCCCAATGAGTTTGCTAACTTTTACAATGCCGTAAGCTTGCATTTGGAAAACAACGGTTTGCATGACATTGTCCCTGGTGCTTTTCTGGGACTGCAGCTCGTGAAAAGGCTACACATAAATAATAACAAGATACGGTCATTTAGGAAGAGCACCTTTCTTGGTTTAGATGACTTGGAATATCTTCAGGCTGATTTTAATCTATTGAGAGACATTGACCCGGCCGTGTTCAGGGACTTAAATAAACTTGAAGTGTTAATTCTAAATGATAACCTCATCAGTGCACTACCTATAAATGTGTTTCAACACGTTCCCATCACCCATCTCGACCTGCGAGGGAACCGAATCAAAACGGTGCCTTATGAGGGAGTTCTCGAACAAATACCGGGCATTGCGGAGGTTTTATTGGAGGATAACCCCTGGGACTGCAACTGTGACCTGGTTTCCCTGAAGGAATGGCTGGAGAATATACCGCAGAACGCGCTTATCGGCCGGGTGATCTGCGAGGCTCCAACGCCACTGCAAGGGAACGACTTGAACGAGACATCGGAGATGGATCTGTGTCCTTCAATAAAAAGTGGTGCTGACGAGAGTTTAGTTGCACCTCCTACCCAAGAGGAGACCTCTGTACCTGGGCCCGTTCCAACGCCTTATAAAGCTAGTGGTGATCCTGGGTCCCCAACTCCAGGGAATGGGAAAAAGGGACGCTCTAAATCGCACTGGCAGTTGAAAACGAAGCCCACATCTATgacaggtgtgaatggggagagagagcagctgcAGATTGTGCAGAACGCATCATGCCCTGTGCCATGCAGCTGCAAGCTCATTGGATCCCggcaggggttaggggttaactgCGAGGGCAAGAAGATAGAGAGCTTGGCTAACCTAAAACCCAAACCCCTCACTGCGCACGAATTAAACATGAGAGATAACAACATCCATGCTATAAAAAAGAACCATCTCAATGGCTATTCAAGTCTGAATCTCCTTGATTTGGGTGGaaacaacatcaaattgataGACAACAGCACTTTTCAAAACCTCACCGAATTAAGATGGTTGTACATGGATAAGAATTACCTGGATACGCTCATTGCGGAAATGTTCATTGGACTTCAAAATCTGGAATATCTAAGTTTGGAATATAATGATATACAGCTGATACTGGCAGGCACCTTCAGCCCTCTGCCTAATCTGCGAGTGCTTTTCCTCAACAATAACTTGCTGAAAGCGCTACCTGTGGATGCTTTCCTTGGAGTGTCTTTATCAAAGATTAGCTTGCATAATAATTATTTCACATATCTCCCTGTCGCAGGGGTCTTAGATCAACTCAATTCGATCATACAAATTGATTTGCATGGGAACCCTTGGGATTGCTCGTGTAATATTGTCCCTTTCAAACAGTGGACGGAGAAACTGGGGGCAGATGTGATCGTTAGTGATCTCAAGTGTGAGTCCCCAGAAGAGTTCTGGAAAAGGGATTTCCGTCACGTCCGAAATGATCTGATGTGTCCCAAGCTGTATGACAAAATCTACCCCACATCTCTCTCCAAAAACAGCACTTTCACCGCAGACACGGGTACGCGCTCGAACTCCTATGTGGAGCCGAACAGGGTATCCATCTCTGTACTAGTCCCTGGGCTACTACTGGTATTTGTCACGTCTGCGTTCACTGTTGTAGGGATGCTTGTCTTCATCTTGCGGAATCGCAAGAGATCAAAGCGGAGGGATGGTAATTCCTCTGCGTCAGAGATAAATTCCTTGCAGACAGTGTGCGACTCGTCTTATTGGCATAGCGGGCCTTACCATGCAGACGGGGGCGCGCAAAGAGGGTTCGACTGTAGCGCCCATTTCTCTCCAACAAATGATGCGTAAAATGACCACTGACAATAGAACCtggaatacaaacagacagacaaatatacTGCGTTCTGTTGACACAATGGCAATTGAAGAACAATAAACAAATGCTATGTTTCTAAGCTTCTTCACTCGCTTTTTGTCGGAGATAGACCATTTTTGTTTGCTCCAGTTGACTGTGGTGCCAATGAGTCTGCTACTGAACCAACTGTAATATATGTATAGACCCCTTCCCCGGCCCCCTATCCCAGTACAGCTATTTGCCGCAATCAGACTGACTATCTGAGAGAGAAGATTCGGGAAATGGTGCACGAGCGCATGAATGTAATGTAAATAACTGACTGTATCATATCTGCATGATTTCGCATGGTTTCAACACACACTGGGGAACCATACCATAATTAACGAAGAAGCCAACCCGACCCTTCTTTCATGTTATCAAtatgaatatatacagtatatatatacatataaaaccATATATGAATATATACAAAGTGCCATTtctctatttttttgtgaactGCGTTATAGgatttgtatttgttgttttaAAACTGTTAAAAAACggaaaaataacacatttggatgAAGAAGAAGATAAACGCTGTCCACGCATgttcttttttgtttgttttatcaTTTGATTGTCGATAAATATCGGGGTTATTTATAATTGGTGCAAACCTTATCATATCTGCACATTCATCTCTTTATGAATGTATAATGTGTTATTTTATGGTGTGCCAATTGTTGAATTTCAGATATTCGGGATGCAGATGAGCATGACCAATTAACGTCACTCAGATGGTTATGCTGCAAGGTTAATGTAGCTAAAAACAGTTCGTGGTTTTGTGTGTTAATGCCTATAGCCTGCtttgggggagaggagaaggcttTACCGAATTATATGGGGGTTTTCTAACTGCATATTTTTTCAAAATTAAAATGTTTTCAATGGAAGTAATGGTATGTGCAGTTCGATCTATGTACAGAGCGCAGGTAGACTAGAATGCTTTTTTTATGTAAAAAGTATTCCTCCACAAAGCGTAGGCTATGATTCACCTCCATTTATGTGAGCTTTTGTAAAGCCATCTACTGTGTCCAAATAATAGAAATGGACTTACATTTTTTAAACTAACGTGCTTAAAATAGATTGGGCAATGGTCAGTTTGCAtacagtaaaacaaaaataaaacccACGTTTTAGCATTCGACAGTATTCGTCTGATGCCATAGGGAAGACTAGGCAGGATCACCGCATTACTCTAGACGAGGAAACTCACGATGTCGCTGTTGGTGCATCTTCTCCATTGGAGGGAGGGCTGAGGTATAGGAGTTTTGCAAAAGGGCGTTTGGAATGGGAATCTTTATCTTGAGATGTTAATTAAATCGTCTATGAATGGGCAATGATGCATTAAGAAACATATATATTATTCAATATTAAAAGTGTTCAGCAGTCGGTCTGTTGCCCAATGCTATGACATTTTACTGAGCAACTATAATGATATCAAGATGATGATTACAGTGTACAATAATGGTTAGCATTAAAGGTGATATTCTGATAATCCATTCAAATGGATCAATGTCACTGATTCTGCAGTATCACGGTACAGATCGTAGGattgtgaaatgttttgtctttgttttatatatatatatatatatatatgaatactGTGTAAATTCAAGCTCTGAATTCGTTTTGTTCATACTGgtttttatttttcattaggATCAGGTCCATCAATGTACCCACTGTATTTAATTATCTTATAAATTAGCATATGTGCAAGAGACCCCACTGCTACAATCAGTTTTGGAATAGTCTTGTCAATAAGGAATGACAAGTCAGACTGGCCTGCAGAAGGCCAAAGTGCTCAGAACCATTTCAATGTCAAACATGTCTCAACCCTGTCTGTTTCATCATTTATCGTAATACAGCAACAAGCATTTTCCCCAGGCCTTTTTAACACTGTGGACTGACAGACTATATGGTTAAATGTGTGACTGTATTAGCAGAACAATGTTCATTGTCGAgtgtctgggctgtgtgtgtgtgtgtgtctatacatttaaataattagaATTATTGATTAAATGTGTGTGCGAGTGCACTAGTGTCTgtctacatgtgtgtgtatgtctgtattccaccccccccccccccacacacacacacacacacccaccaccaccactaaatgTAACCAATCACATAGGCTGACCTTGGGGAGTATTATCTTAGCAGATCTTTGGCAACAACAGTGATGTCCATCACTTCAGACTCCAGTTTGTTGGTGTATTGCTTCAAAGGGTAATTATCCTTCTCTACTGTGGAACATTTTACCATGGCTCATGAATTATTGGTCATCTCTCAACGCTGTGTCCCAGAGTTACATTTATATGCTTTACTACATTTGACCTGCTTCTATTTTGTTAAATAAAAtgtggttgaggttgagtgaaaTCTA

Function

NR:

description
SLIT and NTRK-like protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571278.2 True 5674 mRNA 0.41 1 22119777 22125450

Neighbor

gene id symbol gene type direction distance location
LOC110495820 LOC106574417 coding upstream 180504 21926653 ~ 21939273 (+)
LOC110495818 LOC106574413 coding upstream 786035 21297196 ~ 21333742 (+)
LOC110495817 LOC106574411 coding upstream 862077 21176625 ~ 21257700 (+)
LOC110495811 LOC106574403 coding upstream 1106764 20980049 ~ 21013013 (+)
LOC110495810 gemin8 coding upstream 1140518 20969280 ~ 20979259 (+)
LOC110495822 LOC106575275 coding downstream 350324 22475774 ~ 22477639 (+)
LOC110495826 LOC106575273 coding downstream 441218 22566668 ~ 22596390 (+)
LOC110497098 LOC106574424 coding downstream 473566 22599016 ~ 22641368 (+)
LOC110495829 LOC106574429 coding downstream 574892 22700342 ~ 22713534 (+)
LOC110495834 LOC106574432 coding downstream 625238 22750688 ~ 22752806 (+)
G1526604 NA non-coding upstream 321224 21798266 ~ 21798553 (+)
G1526601 NA non-coding upstream 323589 21795724 ~ 21796188 (+)
G1526532 NA non-coding upstream 368068 21751449 ~ 21751709 (+)
G1526520 NA non-coding upstream 378940 21740453 ~ 21740837 (+)
G1526304 NA non-coding upstream 492354 21627193 ~ 21627423 (+)
G1526984 NA non-coding downstream 76937 22202387 ~ 22202651 (+)
G1527216 NA non-coding downstream 128206 22253656 ~ 22253890 (+)
G1527235 NA non-coding downstream 141346 22266796 ~ 22267021 (+)
G1527254 NA non-coding downstream 151857 22277307 ~ 22277524 (+)
G1527279 NA non-coding downstream 178319 22303769 ~ 22311636 (+)
G1525320 NA other upstream 1362365 20756691 ~ 20757412 (+)
G1524181 LOC106574559 other upstream 1636064 20473360 ~ 20483713 (+)
G1524124 LOC106574554 other upstream 1812873 20305705 ~ 20306904 (+)
LOC110495784 LOC106574551 other upstream 1884597 20206484 ~ 20236753 (+)
LOC110495776 LOC106574545 other upstream 2043465 20065965 ~ 20110618 (+)
G1528194 NA other downstream 1033383 23158833 ~ 23161291 (+)
LOC110495887 LOC108430494 other downstream 2395285 24520697 ~ 24525649 (+)
G1530367 NA other downstream 2879311 25004761 ~ 25005609 (+)
LOC110495895 LOC106574270 other downstream 3023533 25133210 ~ 25157338 (+)

Expression


Co-expression Network