LOC110495829 (LOC106574429)


Basic Information

Item Value
gene id LOC110495829
gene name LOC106574429
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 22700342 ~ 22713534 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036952273.1
agaagcagtttctgcatATCTTCATACTGTATTGTCTTTGGTAATAGTATATTATAAAAAGGTCAGGTGTAATAACCGCACAAACAAAACACATGCAGTTGGTTTGGACAAAGACAGTGGATGCTGATTGATTACTTGCTGCTTTGAATAGGACGATTATTTCAGACTTTTAGTACCGAAAGTCAGTTTACAGTTTCTTCAAGTCTATAATTTAGTTAAACATTTTTTGGTAAATGATGATTGTGACTGACAAAATGCACATTGGAATTATTGGAATCCTACTGGGCATGTACTTGAAGGTTCAAGCAGACTGTGAGCCGTACATCATTCTtattagagaggaggagcggtGCCTTCATGAGTTGCGACTGCATAATGTGTCCAAAACTCCCCAACCAGACTGCAAGGGTATGTGGGACCACTTGAATTGCTGGTCTCCTGCTTTTGTAGGGGAAACTGCATCACAGAACTGTCCCAATTTCTTCAAATCAGAAGGTAAAGTGGATCGAAACTGCACAGACACGGGCTGGACGGACCCATTCCCTCCTTACGAGCATGCATGTTTCAACGAAACCTTCCACTTACTTGGAGAGTCACATGACTCCCACATGTACTTCCCCTATGTGAAGACCATGTACACTGCAGGCTAcgctctctctctaatctctctcaccATCGCCATCACCATCCTCTGTCTCTTTAGGAAACTGCACTGCACCAGAAACTACATCCACATCCAACTCTTCGTTTCCTTCATCCTGCGTGCTACCTTCATCTTCATCAAAGACTCTGTGCTCTTCACCGATGAAGACTTCTACCACTGTGACGACTACCCAGCGGTGTGTAAGTTAGTGGTGATGTTCTCCAACTACTGCATCATGGCTAACTACAGCTGGCTGCTGGTGGAGGGACACTACCTCCACACCCTGGTCAGCCTCTCCTTCTTCTCCAAGAAGAAACACCTTTGGTGGTACATCATCCTGGGCTGGGGTTTGCCAATGATTGTCATTGTATCCTGGGGTTTGGCAAAATACTTCTATGAGGATGAAGGCTGCTGGGAGACAAGGGTACACGACTGGGTTTGGTGGATTCTCAGATTACCAGTCCTACTCTTCATAATCATTAATTTGGTATTTTTTCTGAGTATCATAAGAATTCTGGTGGGGAAACTGCGGATGCCAGACATGCATGGAAATGAATTCAGCCAATACAAGAGACTTACCAAATCGACTTTTCTTTTGGTGACCCTCTTTGGTTTGTACTACATCCTCTTTGCCTTCTTACCCATCAAAGTCAGTGGTTTAACTTACAAAATATGGACCTTTGTTGAGCTGGCTCTTGCATCAACACAGGGCTTTGGAGTTGCTGTTCTTTACTGTTTTCTAAATGGGGAGgtacagtacGAGGTACAGAGGAGATGGCGCAGGTGGAGGCTGAAGCAGCATCTACACAGGGAGCCCAGACAGCATGGTTCCATGAGCCAAAGCGTCTCTCCCCTTACCCAGGTCTCCTTGCTTCCCTGTTCCGGACCGGCCAGCCTGGCATGACCTTTGACCCCCCCCAACCCACCAAATCACTGGTG

Function

NR:

description
PREDICTED: secretin receptor-like isoform X1

GO: NA

KEGG:

id description
K04588 SCTR; secretin receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036952273.1 True 1582 mRNA 0.46 13 22700342 22713534

Neighbor

gene id symbol gene type direction distance location
LOC110497098 LOC106574424 coding upstream 58974 22599016 ~ 22641368 (+)
LOC110495826 LOC106575273 coding upstream 103952 22566668 ~ 22596390 (+)
LOC110495822 LOC106575275 coding upstream 222703 22475774 ~ 22477639 (+)
LOC110495821 LOC106575277 coding upstream 574892 22119777 ~ 22125450 (+)
LOC110495820 LOC106574417 coding upstream 761069 21926653 ~ 21939273 (+)
LOC110495834 LOC106574432 coding downstream 37154 22750688 ~ 22752806 (+)
LOC110495835 en1 coding downstream 55857 22769391 ~ 22773674 (+)
LOC110495843 LOC106574436 coding downstream 471890 23185424 ~ 23198238 (+)
LOC110495847 LOC106574438 coding downstream 555341 23268875 ~ 23273932 (+)
LOC110495849 LOC106574443 coding downstream 605209 23318743 ~ 23342541 (+)
G1527420 NA non-coding upstream 90595 22546056 ~ 22609747 (+)
G1527403 NA non-coding upstream 198935 22501145 ~ 22501407 (+)
G1527398 NA non-coding upstream 202960 22497172 ~ 22497382 (+)
G1527395 NA non-coding upstream 205688 22494430 ~ 22494654 (+)
G1527384 NA non-coding upstream 219426 22480701 ~ 22480916 (+)
G1527970 NA non-coding downstream 158018 22871552 ~ 22885161 (+)
G1527985 NA non-coding downstream 188209 22901743 ~ 22902638 (+)
G1528057 NA non-coding downstream 241843 22955377 ~ 22955666 (+)
G1528059 NA non-coding downstream 242218 22955752 ~ 22962753 (+)
G1528078 NA non-coding downstream 281621 22995155 ~ 22995440 (+)
G1525320 NA other upstream 1942930 20756691 ~ 20757412 (+)
G1524181 LOC106574559 other upstream 2216629 20473360 ~ 20483713 (+)
G1524124 LOC106574554 other upstream 2393438 20305705 ~ 20306904 (+)
LOC110495784 LOC106574551 other upstream 2465162 20206484 ~ 20236753 (+)
G1528194 NA other downstream 445299 23158833 ~ 23161291 (+)
LOC110495887 LOC108430494 other downstream 1807201 24520697 ~ 24525649 (+)
G1530367 NA other downstream 2291227 25004761 ~ 25005609 (+)
LOC110495895 LOC106574270 other downstream 2435449 25133210 ~ 25157338 (+)
G1530785 NA other downstream 2852937 25566471 ~ 25571346 (+)

Expression


Co-expression Network