LOC110495835 (en1)


Basic Information

Item Value
gene id LOC110495835
gene name en1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 22769391 ~ 22773674 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571305.2
GCTTTAGGAGAGTTTAGAAAGATCGCGCCGACATACATTAGAGAAAGCTAGCGACGACGCTGCTGCGCGCGATGTGTAGTCATTCGTGGTAGCGCAGGGCTATTGTGACACTTGGATCGCTTTAGTAGGCTAACATGTCGACAGTGTAGAACATTGTCACATATATCAAAAGTATTTGATATAGGCTTCCTTCATAATATAGTcagatatatttttttgtttgctaTTATTCGGATACGGCATTGAGCAACAAGTGGAGTTTGGCGTGGAGAGTTTGCGCTCCAGCCAAAAGTGTACCAGTTATGGAAGAGCGAATTGATCAGAACAGCCGTGATTCgactgagggagagagtgtgtccCTCTCCCCGAATCTACCATCTCCTCCAATTTTGCCCCACCAGGCAGCACAGCAGGTACATAGAACCACAAACTTTTTTATTGACAATATTCTGCGGCCAGACTTCGGCTGCAAGAAGGAGCTTGGGATTCGGGAGCGGGCGCAGACCTCCGGCAGAGAAAACGTCAACCCTTTGGTAATCAGGCCATCTCACGCGAGCAGCCTTTGCCAGGATTCCAACTGCAGTAGTGACAGTACTTCTTCGTCGTCGTCCTCGCCGTCCTCGAAACAGAGCTCGACAAAACAAGGTGAAGGGAATGGGACTACCACAACGAGATATGGAGACACCGCGTCAATAGTGGTTGTGAATGCCAGTAATGGAGGATCTCCACCCGCTAAAGAATCTACGCCGATGTTATGGCCTGCGTGGGTTTACTGCACGAGATATTCGGATCGACCATCATCTGGCCCAAGGACACGGAAATTGAAAAAGAAGAAAAATGAGAAAGAAGACAAGCGACCCAGAACCGCGTTTACGGCTGAACAACTGCAGAGACTTAAGTCCGAGTTTCAGGCAAATCGCTACATAACAGAACAACGGAGACAGTCACTGGCCACAGAACTGAATCTCAATGAATCCCAAATAAAAATTTGGTTTCAGAATAAGAGGGCAAAAATCAAAAAGGGGAACGGCTACAAGAACGGCCTGGCTCTCCAACTCATGGCCCAAGGACTGTACAACCATTCCACAACCACGGTCCAAGAGGAGAAGGATGATAGCGAGTAAATTCCCCCCTCGTGCAGGGCAAAATAGACGCTGAACTGAAGCAGAGTGCTTGAACTCTTTTGTGAACTGAAAACGAAAGAGGTAAATACGATTTGACTGGGACAGATGCTATTTAAAACCGATTTCTGTTTATGATACAGTATATGGACATAATTATATAAAATATGAACATTATTAAAGTTTATATATAGCCAAAACAATATGACGTTGTATATATTTAATTTCAGGTAAGGTTATGTCTGTATCAATCCCTACTTGCTGGAGATTTAAACTTTTCTTTTTCTTATGATGTTGTTGGCCATTGTTTTAGTATAAGTGTCTGACTCATAGATTTTTTTTGTGATTTCTGTCGCCCCTCTCCCCAATCTCTCACAATTCTACAGACTGCGTTTCTGAACCGACGTGCCAAGCCAAAGATTTTAATATGTTCAGAGAATATGTAGtctgaaataaatacaaaatgtagAATGTG

Function

symbol description
en1 Enables DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in negative regulation of transcription by RNA polymerase II. Located in nucleus. Implicated in Parkinson's disease.

NR:

description
homeobox protein engrailed-1-B-like isoform X2

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0048663 neuron fate commitment biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09319 EN; homeobox protein engrailed

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571305.2 True 1596 mRNA 0.44 2 22769391 22773674

Neighbor

gene id symbol gene type direction distance location
LOC110495834 LOC106574432 coding upstream 16585 22750688 ~ 22752806 (+)
LOC110495829 LOC106574429 coding upstream 55857 22700342 ~ 22713534 (+)
LOC110497098 LOC106574424 coding upstream 128023 22599016 ~ 22641368 (+)
LOC110495826 LOC106575273 coding upstream 173001 22566668 ~ 22596390 (+)
LOC110495822 LOC106575275 coding upstream 291752 22475774 ~ 22477639 (+)
LOC110495843 LOC106574436 coding downstream 411750 23185424 ~ 23198238 (+)
LOC110495847 LOC106574438 coding downstream 495201 23268875 ~ 23273932 (+)
LOC110495849 LOC106574443 coding downstream 545069 23318743 ~ 23342541 (+)
LOC110495853 LOC106574225 coding downstream 780176 23553850 ~ 23564696 (+)
LOC110495857 LOC106575156 coding downstream 791913 23565587 ~ 23570089 (+)
G1527420 NA non-coding upstream 159644 22546056 ~ 22609747 (+)
G1527403 NA non-coding upstream 267984 22501145 ~ 22501407 (+)
G1527398 NA non-coding upstream 272009 22497172 ~ 22497382 (+)
G1527395 NA non-coding upstream 274737 22494430 ~ 22494654 (+)
G1527384 NA non-coding upstream 288475 22480701 ~ 22480916 (+)
G1527970 NA non-coding downstream 97878 22871552 ~ 22885161 (+)
G1527985 NA non-coding downstream 128069 22901743 ~ 22902638 (+)
G1528057 NA non-coding downstream 181703 22955377 ~ 22955666 (+)
G1528059 NA non-coding downstream 182078 22955752 ~ 22962753 (+)
G1528078 NA non-coding downstream 221481 22995155 ~ 22995440 (+)
G1525320 NA other upstream 2011979 20756691 ~ 20757412 (+)
G1524181 LOC106574559 other upstream 2285678 20473360 ~ 20483713 (+)
G1524124 LOC106574554 other upstream 2462487 20305705 ~ 20306904 (+)
LOC110495784 LOC106574551 other upstream 2534211 20206484 ~ 20236753 (+)
G1528194 NA other downstream 385159 23158833 ~ 23161291 (+)
LOC110495887 LOC108430494 other downstream 1747061 24520697 ~ 24525649 (+)
G1530367 NA other downstream 2231087 25004761 ~ 25005609 (+)
LOC110495895 LOC106574270 other downstream 2375309 25133210 ~ 25157338 (+)
G1530785 NA other downstream 2792797 25566471 ~ 25571346 (+)

Expression


Co-expression Network