LOC110495839 (LOC106575259)


Basic Information

Item Value
gene id LOC110495839
gene name LOC106575259
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 22998590 ~ 23007852 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571309.2
GATATGAGTGATTGAAGAATTGCTTCCGTACCACGATCTTTCATCACGTGGTACGTTTTACGATTTATCCTCATCCAATTTCACTGGAATTCCGCAGCCTAGTCTCTCGAACCCCAGAGCTCGCCCTCGTTCAGCGCTGCGCATCACATTCCTCGCAGCAGAATGTGCTCTCACACATTGATGCCACGGATCCATCTAAGGGTTTTGCTTTCGTTTTAAGTTCACCTGGTCTGATGTGTTCCTCTATAGTGTCATTCGGGAGAGGATGTTGCTTCTCATTTACGCAACTTTGCTTGGAATTTTCCTCAAAACAGGCTATGCTCTCCAGATCCAATGTTACCAGTGTGAGGAGGTGAAAAACAATGAATGCTCCACACCAGAGTTCATTGTCAACTGCACGGTCAACGTGCAGGACATGTGTCAGAAGGAGGTACTGGTGAAGAAGGATGgCATATTTTACCGCAAGTCCTGCGCCTCGTCCGGGGCATGCCTCATATCCTCGTCAGGCTACCAGCAGTTCTGCACTGGAAGGATCAACTCTGTGTGCATCTCCTGTTGTAACACACCGCTCTGCAATGGGCCCCGGAAGAAGAACCGCCCGGTCCCGTCGGCCGCCAACTCTTCATTTTCCTCCCTTCTTTTTCTTCTGGTCTCCCTCAcgctggtctccctctctctgacataGACCGAGAGGTGTCCATTTGTCCCCTCCTCTACCCAAAGATAACACTAGAGTATTATGAGAGTACATATAGGGTACAGTACATAACCGTACGTAGTGTATTGGCCACATCAGACTCTAGTGTCGTCTTTGGAGAGGAATCCTATACATAAGAGACTAtcccaggaggttggtggcaacttaattggggagaacgagcttgtggtaatggctggatcagaatgagtggaatggtatcaaagacATCaagcacatggtttccaggtgtttgatggcattccatttgctccgttccggccattattatgagccgtcctcccatcagcagcctcctgtggactCTACAGCGTCATCTTTGGATCGGATACTCAAGAGCTTAAGACTCTTTGGAAGGATCCCCTTTTATAATCCTGGTGTTTTGAGTTTTTGAGAACTGAATGCTTGCCATTGCCTCCTTCTTCTTCGTCCCTCCCTTGCCCTCCAATCCCCCCTTGCTTACTCTGTAGGTTCCCTATTGGGGCCAATGGGCACTGACCTCATCAACGTCGGTGTTCTCCTGTTTATAGGAAGATCGAACACTTCAGATCAATACTCCTGATGATTAGGAGTCAGACGTGATCATAGTCAGTGAGTACTCAGCAGCCGTTTAGCTGTGAGAATTGTGTTAACTCATCATGGATCTGAGTGTAGAGATGGCACTGACAGTTGAGGACATTGAGCAGTGAGTTGTAGGGATTTTGGAGATATACTTAGGTGTCTGCATCATTTACTACTGGTACAAGTTCTTGTTACAGTAAGTACTAACTGCAGGATCTCATGTCTTATATCATTTGTAAGTACAGATGTgtgatcttaatttgaccagtttctcacagcaggaacatATTCCTACAGCAACAAATCCTactgaaatgtgaattattgtgtgggttataattaatggacattttcataggggttgatacattttttgtttggGCAAAccaacattttaaagtggaaaataccactttagaagcctttaaaaaccttgaatacactgcaAGTTTGCTTTTCCTGCTGTACAGAAAATTCCCTGCaaaaacagggtgatcaaattaagatcctacatctgtatatacCCAATTACTTTCTTGGACTTCAAATATTGCTGAAAGACACAAGGGATTTGTTCTTAAACGTTATATAAATtgacatacactactgttcaaaagtttggttcacttagaaatgcccttgttttttaaagaaaagcacattttttgtccattaaaataacatcaaattgatccgaaatacagtgtagacatt

Function

NR:

description
ly6/PLAUR domain-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571309.2 True 1993 mRNA 0.44 3 22998590 23007852

Neighbor

gene id symbol gene type direction distance location
LOC110495838 LOC106574434 coding downstream 20981 22964348 ~ 22977609 (-)
LOC110495837 LOC106575263 coding downstream 49900 22897949 ~ 22948690 (-)
LOC110495836 NA coding downstream 138907 22853240 ~ 22859683 (-)
LOC110495832 LOC106575264 coding downstream 251661 22741195 ~ 22746929 (-)
LOC110495831 LOC106574427 coding downstream 264409 22726121 ~ 22734181 (-)
LOC110495841 LOC106574435 coding upstream 695 23008547 ~ 23168591 (-)
LOC110495844 LOC106574437 coding upstream 173967 23181819 ~ 23186607 (-)
LOC110495845 LOC106574439 coding upstream 205679 23213531 ~ 23223410 (-)
LOC110495846 LOC106574440 coding upstream 241188 23249040 ~ 23265087 (-)
LOC110495850 LOC106574444 coding upstream 330905 23338757 ~ 23362793 (-)
G1528841 NA non-coding downstream 329 22997795 ~ 22998261 (-)
G1528840 NA non-coding downstream 1099 22995919 ~ 22997491 (-)
G1528876 NA non-coding downstream 5664 22992702 ~ 22992926 (-)
G1528860 NA non-coding downstream 7281 22966264 ~ 22991309 (-)
G1528052 NA non-coding downstream 46815 22951561 ~ 22951775 (-)
G1528896 NA non-coding upstream 38846 23046698 ~ 23046921 (-)
G1528899 NA non-coding upstream 43003 23050855 ~ 23051101 (-)
G1528903 NA non-coding upstream 54834 23062686 ~ 23062961 (-)
G1528905 NA non-coding upstream 55986 23063838 ~ 23064105 (-)
G1528906 NA non-coding upstream 56409 23064261 ~ 23064513 (-)
G1528018 NA other downstream 112757 22872045 ~ 22885833 (-)
G1527230 NA other downstream 736128 22262056 ~ 22262462 (-)
LOC110497093 LOC106574562 other downstream 2426723 20558557 ~ 20595753 (-)
G1524755 LOC106581475 other downstream 3268522 19722745 ~ 19730068 (-)
LOC110495764 LOC106574529 other downstream 3421490 19573628 ~ 19577133 (-)
LOC110495851 LOC106574449 other upstream 473688 23479558 ~ 23541681 (-)
LOC110495852 LOC106574460 other upstream 534754 23542411 ~ 23543631 (-)
LOC110497104 LOC106574262 other upstream 1271886 24279738 ~ 24371432 (-)
G1529613 NA other upstream 1385523 24393375 ~ 24393684 (-)

Expression


Co-expression Network