LOC110495845 (LOC106574439)


Basic Information

Item Value
gene id LOC110495845
gene name LOC106574439
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 23213531 ~ 23223410 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571315.2
CGCAAGAACACAGTTATCAAAGATGGCGAAACACTGTTAACAAAAAGCCATATATTCTTTACAAATAGTATTATTTCGCGAATAAGCTGCTGGGAAAAAAACGCTTCGAATCTAAATAGATTAAGTAATTGTGaccggtttaaaaaaaaaacaagggttTACAATGTCGGAGACGAGTGTTTTGCATCAACGGATAAGCTCCGTCATGGACATTCTAGCCTCCGCTGCCGTGACAGAGATTTGCAAATTAGTAGAGGACTGCTGTGGAGCGTTAAATGTAGAAGTCTTTCAAAGCAAAGAGCAAATCAAAATGCTAGAGAAGCAACTCAGCCTGACTGAGTCGAGGTACAGGTCGGTGAGTGGCATAGAAGGGCAGACGTTTGTTACCTGTGGTTCATCGAGAACCAACAGTCCTTCGGGCAATTCCCCCGCGGCTGAAGACGAAGATTTCCAGCAGTTCATTGTCTCTGAAGAGGAGTTTCCCCCCGAGCAGCAGCATTATAAGCAGGAGTGGAGCCCCAGTCTGGGGAAATATAATTGGAACCCCATacagattaaagaggaacaggGGGAATTCAGTATCATCCAGGAGGAGGAAGACTCTGTATTCACTCCTGCCTGGGTGAAAAGTGACTATGATCAGTACTCAACTCAGTCCTCACAAACCCAAAGTGAAGAATACAAAGACAGAATGGCCTCAACTGAACAGATCAAAACAGAACCTAAGGAAGATGATTCCTCAGAGACAACCAGTGACTCTCATCCCCAGGGCAAATTAAAGAAGACATGGACAGAAAAAGGACAAAGCTTGAATGGTAGAAAATCCATGGATTTGAAATCACCAGTGCAAAGGAGTAGTCACACAGAAGATAAATCATTTTGCTGTAGTGATTGTGGTGAATGTTTTGCTCAGATGGGAACACTGGATTCTCATATGAGGACCCACACAAGGGATAAATCGTATCACTGTCAGGATTGTGACAAAGTATTCACTCGGATTGACTGCTTCAAATTGCACATGAAGgcccacacaggagagaaaccgcaTCGCTGTGGTGAATGTGGCAAATGTTTTTCTCAAGTTGGGTATCTGAACTATCACATAAAgactcacacaggggagaaacctcaTCGCTGTCATGATTGTGGCAAATGTTTCTTTCGAGTTGGTGAGCTGACACTTCATAGGAGGATTCACACAGGCGAGAAACCACATCGCTGCCAGGTCTGTGGCAAATGTTTTGCTCGTCCTAGCAATCTGAGTTCTCACATTAggattcacacaggggagaaatcttatagctgtcaTTATTGTGGCAAAAATTTTCGTCATAAAGGTAATCTGACAACACATATGAGGATTCACACGAGGAAAATCACATTGTCGCTCTAGTAGCAGATCTTTCAGCACTGGCGGTAGTCACATGAGTTCATATGAGGATAATCACATGAACGATAAACTATATTGCTGTCAGGATTGTTGTAAATATTTCACTAATTGTTTGAATCTGAATTGACTggggagacggagagaaagagaccacATTACTGCCATGACTAGAAAATATTTAATGACTGCCTTTTTTTGACATTGTGTATGTGAGGAACACGGGAGGAATCTTACAAGCGTCTGTCAAATGCTTAAATGCCAAAAGTGCATTGAATTGTCATCAGAATAGACACTGAAAATAATCTATTTAGGTTAAGTCAAAACAAAGCAATGCTTAAGTGGACACATGGACATCAGTCAGACGATTCAGTCACATTTTATAACTTCCACCTGTGAGTGGAGATACGGTTCTTGGGTGAATAATATACTCTTGTCTTTTGCTATTTGTAATACTACAAATAGTTACTATTGTTCATAGTTTTATACTTGATTACATTGTATAGTCATCTTTAACTTTCCATGTGAACCCTGCACAATACCTGTCAAATAATTAATCCAACGACAGTGATACGATTATTTTGATCTGATAAAGCCCACGTTGACGCAAGCTGTAACCGAGTCTAGCTGAAACGGCCGCTTGAACTGGTCCATTTGAATCTAGTAGAAACCATTTGATTCCAGTTCAGCCCACGAGACACCAGTAACCATTCTTTACCTGAACTAACTGGAATTTCCCCTAAGGAATTGATGCATTGTTTATGTGTGCATGTATGATACCTATTtcggtgtgttattgtgtgttttgcCCCCTATTGAGTACTGTCTTCCTTGTAAGTCATGATAAAACATTTTATGGAAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571315.2 True 2249 mRNA 0.41 2 23213531 23223410

Neighbor

gene id symbol gene type direction distance location
LOC110495844 LOC106574437 coding downstream 26924 23181819 ~ 23186607 (-)
LOC110495841 LOC106574435 coding downstream 45087 23008547 ~ 23168591 (-)
LOC110495839 LOC106575259 coding downstream 205679 22998590 ~ 23007852 (-)
LOC110495838 LOC106574434 coding downstream 235922 22964348 ~ 22977609 (-)
LOC110495837 LOC106575263 coding downstream 264841 22897949 ~ 22948690 (-)
LOC110495846 LOC106574440 coding upstream 25630 23249040 ~ 23265087 (-)
LOC110495850 LOC106574444 coding upstream 115347 23338757 ~ 23362793 (-)
LOC110496920 LOC106574445 coding upstream 236426 23459836 ~ 23478565 (-)
LOC110495851 LOC106574449 coding upstream 256148 23479558 ~ 23541681 (-)
LOC110495852 LOC106574460 coding upstream 319001 23542411 ~ 23543631 (-)
G1528964 NA non-coding downstream 33221 23180037 ~ 23180310 (-)
G1528963 NA non-coding downstream 33498 23179766 ~ 23180033 (-)
G1528962 NA non-coding downstream 34209 23179123 ~ 23179322 (-)
G1528915 NA non-coding downstream 134886 23078416 ~ 23078645 (-)
G1528911 NA non-coding downstream 141258 23072014 ~ 23072273 (-)
G1529050 LOC106574443 non-coding upstream 117090 23340500 ~ 23342444 (-)
G1529062 NA non-coding upstream 133581 23356991 ~ 23357190 (-)
G1529083 NA non-coding upstream 164096 23387506 ~ 23387761 (-)
G1529084 NA non-coding upstream 164826 23388236 ~ 23388473 (-)
G1529089 NA non-coding upstream 170763 23394173 ~ 23394483 (-)
G1528018 NA other downstream 327698 22872045 ~ 22885833 (-)
G1527230 NA other downstream 951069 22262056 ~ 22262462 (-)
LOC110497093 LOC106574562 other downstream 2641664 20558557 ~ 20595753 (-)
G1524755 LOC106581475 other downstream 3483463 19722745 ~ 19730068 (-)
LOC110497104 LOC106574262 other upstream 1056328 24279738 ~ 24371432 (-)
G1529613 NA other upstream 1169965 24393375 ~ 24393684 (-)
G1530967 LOC106574270 other upstream 1926658 25150068 ~ 25150994 (-)

Expression


Co-expression Network