LOC110495847 (LOC106574438)


Basic Information

Item Value
gene id LOC110495847
gene name LOC106574438
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 23268875 ~ 23273932 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571319.2
CTTGTTTTATTGTTGCTGGCGAGTCGCTTGTAGCGTTGATTTAGTAAATCATCATTGGAGcggattttgttttgtttgtgatCAACATCATTTTTACGTGGACAAAGCCATATTCGTTGAATCCTCAACTCTCAAACAATTGAAAATGTCTCAACTACAGTTGCTGCGTGAGTTTTTAAATGAGCGTGTAATGGCTGCTGCTGTCGACATTTTTGGGGCAGTTGAGAAAACGGTAGCTGAGTACCAAGAGGAAAATGATCGTCTACGGAGACTGCTGCGGATAGATTCCTTGCagctctctctagctgtctctgaAGAGGAGGTTCTCCCTGAGAATCAGAATTGTGAGCAGGAGTGGAGCTTCAGTCTGGGACAGGAGAACACTGAAGCCACACAGATTAAAGAGGAAGAGGAGCAAATCAGTCAGGAGGAAGAACGGCTTCAAGAGCTCTTTGATACCAAAAATGCCACTTTCACTCCTGCCTGTGTGACAAGTAAATGTGATCAGGTGGACCCCTTGACTCCTCAAATCCAGACTTTGGAGAACCGAGAGTGTGACCCGAAACAAGTGAATCTCACACCTTTTGGTACTGTGACTCAGCTAAAAGCTCTCAACATTCCATGTGACCCTCCAAATAATCAAAACAATGCATCCAGCCACAGCACAGCCGAAAGCAGTGACCCAATAGGACTCGACAGCAGCCCAACATTAGATCCCAGCCCACCATTGACTCACAACCCACCATTTAAGAAACACAGATCCAAACCCAGCAACACAGCTATAAAAACTCTCCGCTGCTGTGACTGTGGTGAAACATTTGCTCTAAAAGCTGACCTGCAGATGCATGTGACTCTCGCCAAGAAGCAACCCCGTGAATGCCAATTCTGCAAAAATTTCTACAGATCTACCTGTAAACTTTTGGCCCATGTCAGACTGTGTCACGATGGGAAAACCAGCACCTGCCCCTATTTTGGAAAGACCTTCAAACTAGAAGGAGATCTGTCCAAGCACatgattcacacaggagagaaacgatttagctgtggtgactgtgggaagagctttAATCGCAAGGGGAATCTAACCCAACACATACTgactcacacaggggagaaatcatTTAGttgtggtgactgtgggaaaagcttcagtCTCAAGAGGAACCTAACCGAACATGTTcggactcacacaggagagaaaccatttagctgtagtgactgtgggaagagcttcaaacAGAAGGGACACCTAACCATGCATAaactgactcacacaggagagaaaccatttagctgtggtgactgtgggaagagtttcaatCGCAAGCAGCCCCTAAACATGCATAaactgactcacacaggagagaaaccatttagctgtgaTGACTGTGGGAAAAGTTTTAATTTGAAGGACTCCCTAAAGAAACACAAATttactcacacaggagagaaaccctttagttgtggtgactgtgggaaaagcttctATCAGAAGGGGCACCTGAACGTGCACAAACGGACTCATACTGATTCACAcgagagaaaccatttagctgtgggAAAAGCTTTAGTGTCAAGGGGAACCTAACCATGCACAAACTGACTGCTGCTCTGGCTAGGATTCCGTCGTAAGTAGAGGTcagccgattatgatttttcaacgccgataccgataattggaggaccaaaaaaagctgttgccgattaaaaaattaaaaaatagtttattttatttttttacatttattt

Function

NR:

description
gastrula zinc finger protein XlCGF46.1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571319.2 True 1749 mRNA 0.44 2 23268875 23273932

Neighbor

gene id symbol gene type direction distance location
LOC110495843 LOC106574436 coding upstream 70637 23185424 ~ 23198238 (+)
LOC110495835 en1 coding upstream 495201 22769391 ~ 22773674 (+)
LOC110495834 LOC106574432 coding upstream 516069 22750688 ~ 22752806 (+)
LOC110495829 LOC106574429 coding upstream 555341 22700342 ~ 22713534 (+)
LOC110497098 LOC106574424 coding upstream 627507 22599016 ~ 22641368 (+)
LOC110495849 LOC106574443 coding downstream 44811 23318743 ~ 23342541 (+)
LOC110495853 LOC106574225 coding downstream 279918 23553850 ~ 23564696 (+)
LOC110495857 LOC106575156 coding downstream 291655 23565587 ~ 23570089 (+)
LOC110495855 LOC106574229 coding downstream 296499 23537127 ~ 23586847 (+)
LOC110495854 LOC106574228 coding downstream 313679 23587611 ~ 23651133 (+)
G1528215 NA non-coding upstream 78756 23189778 ~ 23190119 (+)
G1528210 NA non-coding upstream 90431 23178179 ~ 23178444 (+)
G1528195 NA non-coding upstream 106709 23161723 ~ 23162166 (+)
G1528139 NA non-coding upstream 190239 23078430 ~ 23078636 (+)
G1528138 NA non-coding upstream 190497 23078091 ~ 23078378 (+)
G1528313 NA non-coding downstream 74148 23348080 ~ 23348315 (+)
G1528328 NA non-coding downstream 95149 23369081 ~ 23369294 (+)
G1528346 NA non-coding downstream 120184 23394116 ~ 23394362 (+)
G1528350 NA non-coding downstream 123586 23397518 ~ 23397747 (+)
G1528353 NA non-coding downstream 129997 23403929 ~ 23404187 (+)
G1528194 NA other upstream 107584 23158833 ~ 23161291 (+)
G1525320 NA other upstream 2511463 20756691 ~ 20757412 (+)
G1524181 LOC106574559 other upstream 2785162 20473360 ~ 20483713 (+)
G1524124 LOC106574554 other upstream 2961971 20305705 ~ 20306904 (+)
LOC110495887 LOC108430494 other downstream 1246803 24520697 ~ 24525649 (+)
G1530367 NA other downstream 1730829 25004761 ~ 25005609 (+)
LOC110495895 LOC106574270 other downstream 1875051 25133210 ~ 25157338 (+)
G1530785 NA other downstream 2292539 25566471 ~ 25571346 (+)
G1530923 LOC106574292 other downstream 2564574 25838506 ~ 25840353 (+)

Expression


Co-expression Network