Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110495850 |
| gene name | LOC106574444 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048582.1 |
| NCBI id | CM023236.2 |
| chromosome length | 74657750 |
| location | 23338757 ~ 23362793 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| pinopsin-like |
| id | name | namespace |
|---|---|---|
| GO:0007186 | G protein-coupled receptor signaling pathway | biological_process |
| GO:0007601 | visual perception | biological_process |
| GO:0018298 | protein-chromophore linkage | biological_process |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0009881 | photoreceptor activity | molecular_function |
| GO:0004930 | G protein-coupled receptor activity | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021571321.2 | True | 3184 | mRNA | 0.47 | 4 | 23338757 | 23362793 |
23,316,000
23,320,000
23,324,000
23,328,000
23,332,000
23,336,000
23,340,000
23,340,000
23,344,000
23,348,000
23,352,000
23,356,000
23,360,000
23,364,000
NC_048582.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110495846 | LOC106574440 | coding | downstream | 73670 | 23249040 ~ 23265087 (-) |
| LOC110495845 | LOC106574439 | coding | downstream | 115347 | 23213531 ~ 23223410 (-) |
| LOC110495844 | LOC106574437 | coding | downstream | 152150 | 23181819 ~ 23186607 (-) |
| LOC110495841 | LOC106574435 | coding | downstream | 170313 | 23008547 ~ 23168591 (-) |
| LOC110495839 | LOC106575259 | coding | downstream | 330905 | 22998590 ~ 23007852 (-) |
| LOC110496920 | LOC106574445 | coding | upstream | 97043 | 23459836 ~ 23478565 (-) |
| LOC110495851 | LOC106574449 | coding | upstream | 116765 | 23479558 ~ 23541681 (-) |
| LOC110495852 | LOC106574460 | coding | upstream | 179618 | 23542411 ~ 23543631 (-) |
| trnat-ugu-38 | NA | coding | upstream | 279078 | 23641871 ~ 23641943 (-) |
| wdsub1 | LOC106574230 | coding | upstream | 289644 | 23652437 ~ 23661732 (-) |
| G1528972 | NA | non-coding | downstream | 89827 | 23196164 ~ 23248930 (-) |
| G1528964 | NA | non-coding | downstream | 158447 | 23180037 ~ 23180310 (-) |
| G1528963 | NA | non-coding | downstream | 158724 | 23179766 ~ 23180033 (-) |
| G1528962 | NA | non-coding | downstream | 159435 | 23179123 ~ 23179322 (-) |
| G1528915 | NA | non-coding | downstream | 260112 | 23078416 ~ 23078645 (-) |
| G1529083 | NA | non-coding | upstream | 24713 | 23387506 ~ 23387761 (-) |
| G1529084 | NA | non-coding | upstream | 25443 | 23388236 ~ 23388473 (-) |
| G1529089 | NA | non-coding | upstream | 31380 | 23394173 ~ 23394483 (-) |
| G1529099 | NA | non-coding | upstream | 41942 | 23404735 ~ 23405006 (-) |
| G1529156 | NA | non-coding | upstream | 138471 | 23501264 ~ 23586833 (-) |
| G1528018 | NA | other | downstream | 452924 | 22872045 ~ 22885833 (-) |
| G1527230 | NA | other | downstream | 1076295 | 22262056 ~ 22262462 (-) |
| LOC110497093 | LOC106574562 | other | downstream | 2766890 | 20558557 ~ 20595753 (-) |
| G1524755 | LOC106581475 | other | downstream | 3608689 | 19722745 ~ 19730068 (-) |
| LOC110497104 | LOC106574262 | other | upstream | 916945 | 24279738 ~ 24371432 (-) |
| G1529613 | NA | other | upstream | 1030582 | 24393375 ~ 24393684 (-) |
| G1530967 | LOC106574270 | other | upstream | 1787275 | 25150068 ~ 25150994 (-) |
