LOC110495851 (LOC106574449)


Basic Information

Item Value
gene id LOC110495851
gene name LOC106574449
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 23479558 ~ 23541681 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571325.2
ACTGAGAAGTGGTTCTGAAAGAGGGGCTCCATGAAAAATGACAGAGGAGGTGATAGTTATAGCCAAGTGGGACTACTCGGCTCAGCAGGAACAGGAACTTGACATCCGGAAAAACGAGCGGCTGTGGCTCCTGGATGACAGCAAGACGTGGTGGAGGGTGAGGAACGCCTCCAACCGGACCGGATACGTCCCCTCTAACTATGTGGAGAGGAAAAACAGCTTAAAGAAGGCCTCGCTGGTGAAAAACATCAAAGACACACTCGgCCTGGGGAAGACGAAGAGGAAGACGAGTGCGCGCGATGCCTCTCCAACACCCAGCACGGACGCAGAGTACCCGTCCAATGGTGGCGGAGGTAGCAGCGCCGAGCGTATCTATGACCTCAGCATCCCAGCCCTGGTCAAGTTCGCCTACACGGCGGAGCGGGAAGACGAGCTGACACTGGTGAAGGGGTCAAGGGTCATTGTCATGGAGAAGTGTAGCGACGGCTGGTGGCGAGGGAGTTCTGAAGGTCGGGTAGGTTGGTTCCCCTCTAACTATGtcctggaggagggagaggaggaggccgTCTGGGGGGACCTAGGCGGAGGTTACCCAGGACAGGGGGCAGGGTCGGGAGGGGTGACCAACGGGACCACCAGGGCGATCCACACTGTTCAGACGCTGTACCCCTTCAGCTCTGTGACCGATGAGGAGCTGAACTTTGAAAAGGGCGAGGTGATGGAGGTGCTGGAGAAACCGGAGAACGACCCTGAGTGGTGGCGGTGTCGGAACGCCCGTGAACAGGTGGGCCTGGTGCCAAAGAACTATGTGGTTATACTTAGCGACGATCCAGCCCCCGGGGGTGGGATGGGCTCGGGCCCCCACTCGCCCCAGATCAACTACACAGGGCCGGCCCGCGTGGGAAAGTTTGCCGGGAAGGACTGGTACTATGGGGGAGTGACCAGGCATCAGGCAGAGTGTGCGCTCAACGAGAGAGGAGGTCAGGGAGACTTCCTGGTCAGAGACAGCGAATCATCGcccagTGATTTCTCCGTGTCCCTCAAGGCGATGGGAAAGAACAAGCACTTCAAGGTTGCGCTGGCGGAGGGGGTCTACTGTATCGGCCAGAGACGCTTCAGCAGCATGGACGAACTGGTGGAGCATTACAAAAAAGCCCCGATCTTCACCAGTGAACATGGAGACAAACTCTACCTGGTCAAACCTCTGCTGTGACCACACACAAATTCTCGCGttcatacatttacacacacacacacactccggacCCCGGTGCTCGGCCTGGCCTAATAACAAGCCTTATTACCGGACTTGCGACTGACTGATTGGGCACAGCAATATCCCCTGGTCTGCCCATGACCCTTCAATACAGGTGCTAAAAGTCACCATAAACTCAACAGAGAATCAGTTAGCACAGAGAGAGACTCAAATGGTACATGTTGGCCACCGTAGCTCAGATTCCTTTCAGAATAATGACATTGAGTCCTGTCCAGAAGTGTCCAGAGAACAGCTTCAGTAAGGGCCCGTCTGTAAGCACCCGCTCTTTGCCTTGGCTGACAACTCCACCTCCTAGTAAAAGCCCTGCCGGTGCCTCCTAGGTTTTTGGAGTGAGCACGGATGGGGATTTACAGTCAATGGTTCCTTCACAACAGCTACATACGCTATGAAAGTGAATATTTAATGTGACCCGTCCCTTGCAGAAAGTAGTATTACGTTTCCATAGACTCTTGTACCAGAAAGAAAGGCACCACAAATGGTACTGCATTAACCAGATGAGGAAAGGACGCCCTCTGTAGGTGTATTGTGGAATGGACACGGTCAGGAAGCTGCGCGTTGAATGTCCGTGGATGTATACCGCCGACCATGTGCCACACCCCCATACTGCTCAAATGTGCCCCTAACGTTCTCTTCGAATCCACTGCTTTCCTCAACGTCCGAGTGGAAACATCGCTGACCGAGGACGGAGATTCAAGAGCGATAGGAAAACGTTTAGTTGGTTGTCTGTTTGCCAATCAAAGTCTGTTCAAAATTAGTTTCCTGcttttaaaaatgaaaaactgtGTCTTAATGTTACTGAGCACTGTTATTTAAATCTTGTTTTCAgctgtgtatgtatatattaaAAAGAAGAATAAGGTGAATATTATATGATTAGATACAGCGGAAGGTACTGTACTCCAAGATGGTGTGGTGACTGAGGATTGAAATACTTTTGTTCAATTAAAAGTTTTGCCGAAATAAGCTTTCTGGTTGCA
>XM_021571323.2
gggggccatttgggacacatccatggAGAGAACATGATGGTGTCCTTCACATGATATTGAAGGTCCTGCCTGTCTATTTATCCAATATCCAGTCAGCTCTGTGGCTGATGCTGTGGCGAGGGAGGAAGCTGAGCACAAGTCAACACGTCTAACTGCATCTCTCATCAGGGGGGCCACAGCAACGGCAGGCTGGCATTGACAAACACGCCAGCGCTCAGTCAGAGGAGCCTCACAGAGCAGGTCACTGCTGAGGGAGAGCGGGAGTTAGAGCAGTAGCGTCCATGATGTTTGTGTGGATGGCATTATGTATCGTTACTccctcacatctggaggaaaataGTCATTATTCATGTGATGATAATCCTTTGTGTGAAGTGTGATAATCAGTTACAAACAGTCATGAATTGCTCTGCTGAGAGGGATAGGCATACAAGACAATGCAAATGTGATGTAATGTGTGTACAATAATTGTGTTGTGCTCTGTGCTCCCTACCCTTTCCTTTTGGCAGGCGTGACGTCACATTTCAAGGCAGTTGGTTGagctggaggtagaggaggagacgaGCAACCCAGCGAGTTGAAGGGCCTGCGAAAAAAAGAGACGTCGTTAAAAGATAACCAAGCATATTGGTTTTTAAAAGTCAACTTTTAGACCTCGAAAGTGAATATCGAAGACTACTTTTGCAAATTCCTGACCTGATAATCCGATTCAACTGGAGAAACCACCAAGAGGGGCTCCATGAAAAATGACAGAGGAGGTGATAGTTATAGCCAAGTGGGACTACTCGGCTCAGCAGGAACAGGAACTTGACATCCGGAAAAACGAGCGGCTGTGGCTCCTGGATGACAGCAAGACGTGGTGGAGGGTGAGGAACGCCTCCAACCGGACCGGATACGTCCCCTCTAACTATGTGGAGAGGAAAAACAGCTTAAAGAAGGCCTCGCTGGTGAAAAACATCAAAGACACACTCGgCCTGGGGAAGACGAAGAGGAAGACGAGTGCGCGCGATGCCTCTCCAACACCCAGCACGGACGCAGAGTACCCGTCCAATGGTGGCGGAGGTAGCAGCGCCGAGCGTATCTATGACCTCAGCATCCCAGCCCTGGTCAAGTTCGCCTACACGGCGGAGCGGGAAGACGAGCTGACACTGGTGAAGGGGTCAAGGGTCATTGTCATGGAGAAGTGTAGCGACGGCTGGTGGCGAGGGAGTTCTGAAGGTCGGGTAGGTTGGTTCCCCTCTAACTATGtcctggaggagggagaggaggaggccgTCTGGGGGGACCTAGGCGGAGGTTACCCAGGACAGGGGGCAGGGTCGGGAGGGGTGACCAACGGGACCACCAGGGCGATCCACACTGTTCAGACGCTGTACCCCTTCAGCTCTGTGACCGATGAGGAGCTGAACTTTGAAAAGGGCGAGGTGATGGAGGTGCTGGAGAAACCGGAGAACGACCCTGAGTGGTGGCGGTGTCGGAACGCCCGTGAACAGGTGGGCCTGGTGCCAAAGAACTATGTGGTTATACTTAGCGACGATCCAGCCCCCGGGGGTGGGATGGGCTCGGGCCCCCACTCGCCCCAGATCAACTACACAGGGCCGGCCCGCGTGGGAAAGTTTGCCGGGAAGGACTGGTACTATGGGGGAGTGACCAGGCATCAGGCAGAGTGTGCGCTCAACGAGAGAGGAGGTCAGGGAGACTTCCTGGTCAGAGACAGCGAATCATCGcccagTGATTTCTCCGTGTCCCTCAAGGCGATGGGAAAGAACAAGCACTTCAAGGTTGCGCTGGCGGAGGGGGTCTACTGTATCGGCCAGAGACGCTTCAGCAGCATGGACGAACTGGTGGAGCATTACAAAAAAGCCCCGATCTTCACCAGTGAACATGGAGACAAACTCTACCTGGTCAAACCTCTGCTGTGACCACACACAAATTCTCGCGttcatacatttacacacacacacacactccggacCCCGGTGCTCGGCCTGGCCTAATAACAAGCCTTATTACCGGACTTGCGACTGACTGATTGGGCACAGCAATATCCCCTGGTCTGCCCATGACCCTTCAATACAGGTGCTAAAAGTCACCATAAACTCAACAGAGAATCAGTTAGCACAGAGAGAGACTCAAATGGTACATGTTGGCCACCGTAGCTCAGATTCCTTTCAGAATAATGACATTGAGTCCTGTCCAGAAGTGTCCAGAGAACAGCTTCAGTAAGGGCCCGTCTGTAAGCACCCGCTCTTTGCCTTGGCTGACAACTCCACCTCCTAGTAAAAGCCCTGCCGGTGCCTCCTAGGTTTTTGGAGTGAGCACGGATGGGGATTTACAGTCAATGGTTCCTTCACAACAGCTACATACGCTATGAAAGTGAATATTTAATGTGACCCGTCCCTTGCAGAAAGTAGTATTACGTTTCCATAGACTCTTGTACCAGAAAGAAAGGCACCACAAATGGTACTGCATTAACCAGATGAGGAAAGGACGCCCTCTGTAGGTGTATTGTGGAATGGACACGGTCAGGAAGCTGCGCGTTGAATGTCCGTGGATGTATACCGCCGACCATGTGCCACACCCCCATACTGCTCAAATGTGCCCCTAACGTTCTCTTCGAATCCACTGCTTTCCTCAACGTCCGAGTGGAAACATCGCTGACCGAGGACGGAGATTCAAGAGCGATAGGAAAACGTTTAGTTGGTTGTCTGTTTGCCAATCAAAGTCTGTTCAAAATTAGTTTCCTGcttttaaaaatgaaaaactgtGTCTTAATGTTACTGAGCACTGTTATTTAAATCTTGTTTTCAgctgtgtatgtatatattaaAAAGAAGAATAAGGTGAATATTATATGATTAGATACAGCGGAAGGTACTGTACTCCAAGATGGTGTGGTGACTGAGGATTGAAATACTTTTGTTCAATTAAAAGTTTTGCCGAAATAAGCTTTCTGGTTGCA
>TU1750687
GCATACAAGACAATGCAAATGTGATGTAATGTGTGTACAATAATTGTGTTGTGCTCTGTGCTCCCTACCCTTTCCTTTTGGCAGGCGTGACGTCACATTTCAAGGCAGTTGGTTGagctggaggtagaggaggagacgaGCAACCCAGCGAGTTGAAGGGCCTGCGAAAAAAAGAGACGTCGTTAAAAGATAACCAAGCATATTGGTTTTTAAAAGTCAACTTTTAGACCTCGAAAGTGAATATCGAAGACTACTTTTGCAAATTCCTGACCTGATAATCCGATTCAACTGGAGAAACCACCAAGAGGGGCTCCATGAAAAATGACAGAGGAGGTGATAGTTATAGCCAAGTGGGACTACTCGGCTCAGCAGGAACAGGAACTTGACATCCGGAAAAACGAGCGGCTGTGGCTCCTGGATGACAGCAAGACGTGGTGGAGGGTGAGGAACGCCTCCAACCGGACCGGATACGTCCCCTCTAACTATGTGGAGAGGAAAAACAGCTTAAAGAAGGCCTCGCTGGTGAAAAACATCAAAGACACACTCGgCCTGGGGAAGACGAAGAGGAAGACGAGTGCGCGCGATGCCTCTCCAACACCCAGCACGGACGCAGAGTACCCGTCCAATGGTGGCGGAGGTAGCAGCGCCGAGCGTATCTATGACCTCAGCATCCCAGCCCTGGTCAAGTTCGCCTACACGGCGGAGCGGGAAGACGAGCTGACACTGGTGAAGGGGTCAAGGGTCATTGTCATGGAGAAGTGTAGCGACGGCTGGTGGCGAGGGAGTTCTGAAGGTCGGGTAGGTTGGTTCCCCTCTAACTATGtcctgga

Function

NR:

description
PREDICTED: cytoplasmic protein NCK2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571325.2 False 2253 mRNA 0.52 4 23479558 23529053
XM_021571323.2 False 2962 mRNA 0.51 4 23479558 23541681
TU1750687 True 830 TUCP 0.52 3 23481540 23541256

Neighbor

gene id symbol gene type direction distance location
LOC110496920 LOC106574445 coding downstream 993 23459836 ~ 23478565 (-)
LOC110495850 LOC106574444 coding downstream 116765 23338757 ~ 23362793 (-)
LOC110495846 LOC106574440 coding downstream 214471 23249040 ~ 23265087 (-)
LOC110495845 LOC106574439 coding downstream 256148 23213531 ~ 23223410 (-)
LOC110495844 LOC106574437 coding downstream 292951 23181819 ~ 23186607 (-)
LOC110495852 LOC106574460 coding upstream 730 23542411 ~ 23543631 (-)
trnat-ugu-38 NA coding upstream 100190 23641871 ~ 23641943 (-)
wdsub1 LOC106574230 coding upstream 110756 23652437 ~ 23661732 (-)
LOC110495859 LOC106574231 coding upstream 127473 23669154 ~ 23750347 (-)
LOC110495860 LOC106574232 coding upstream 239135 23780816 ~ 23821326 (-)
G1529099 NA non-coding downstream 74552 23404735 ~ 23405006 (-)
G1529089 NA non-coding downstream 85075 23394173 ~ 23394483 (-)
G1529084 NA non-coding downstream 91085 23388236 ~ 23388473 (-)
G1529083 NA non-coding downstream 91797 23387506 ~ 23387761 (-)
G1529062 NA non-coding downstream 122368 23356991 ~ 23357190 (-)
G1529193 NA non-coding upstream 23637 23565318 ~ 23570351 (-)
G1529206 LOC106574228 non-coding upstream 49320 23591001 ~ 23591228 (-)
G1529222 NA non-coding upstream 71924 23613605 ~ 23614006 (-)
G1529250 NA non-coding upstream 120930 23662611 ~ 23662833 (-)
G1529252 NA non-coding upstream 123151 23664832 ~ 23666137 (-)
LOC110495841 LOC106574435 other downstream 310967 23008547 ~ 23168591 (-)
G1528018 NA other downstream 593725 22872045 ~ 22885833 (-)
G1527230 NA other downstream 1217096 22262056 ~ 22262462 (-)
LOC110497093 LOC106574562 other downstream 2907691 20558557 ~ 20595753 (-)
G1524755 LOC106581475 other downstream 3749490 19722745 ~ 19730068 (-)
LOC110497104 LOC106574262 other upstream 738057 24279738 ~ 24371432 (-)
G1529613 NA other upstream 851694 24393375 ~ 24393684 (-)
G1530967 LOC106574270 other upstream 1608387 25150068 ~ 25150994 (-)
G1531142 NA other upstream 1977740 25519421 ~ 25523180 (-)

Expression


Co-expression Network