LOC110495852 (LOC106574460)


Basic Information

Item Value
gene id LOC110495852
gene name LOC106574460
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 23542411 ~ 23543631 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571326.2
ggagtcaaggggtctgaatacgtccCGAATACACTGTAAGAGCATAACCAAAGATAACCATAGAGAACTCTATGGTACCCCTGGTGGTCATGTTTAGTCTTACTTTTAATGACGCGATGATCTGCGACTGCGCAGATACGGCACGTCACACTTTCGCGAAACAGAGGAATGTCTCCAACTAGTTAGCTGGGTACGAATAAAATAATTTACGCTCATAATGTCGGTCTTTCATGACGAAGTTGAGATCGAGGACTTTGAATATGACGAGGATGAAGAGACATACTATTTTCCCTGCCCATGTGGCGACAGATTTGCCATAACCAAAGAGGATTTGGAAAATGGTGAAGAGGTGGCGACGTGTCCGAGCTGCTCGCTCATTGTTAAAGTAATCTACGACAAGGAGGAATTTATGTCTGGGGAGATAATCGAAGCACCAACTACAGAGAGCAGATTGCAATTGACTCCGTCCTCCTGACAGCGATGATACATCCCCCTTCATTTTCTCATCTCCCATCAGTAAAAGTGGACCCTGCAGCATTTGTATGTGCTTCCACACAACACAAATAAACATTATGAACGATATGCTTCACTGGTGAGGTCTGGGATGGAGGATTCTCAGGATTCATTCACATGTTCCTGGCATTGGTTTTGCAGAGTCACGTAAAGGACCCTAACCACCACTATTTGCACAACATATTTAAATAAATCCTTTATTCTTTTAAGTCTTTCACTCCCTTTTTTATAAACATGTTTATGCATTTTTGTGGATGCCTCAAGATTAAACCAGGATGAAGTGAATACCATTTTCTTTCTTCTTGTTAACTTGCTTGTAGTTTTTATGTTTGAACAGCAGGGGAGGCAGATGTTCAAGGAGAAATACAGGCCTACTTACTGTACAGGGAATAAATAGAGTGCCGTTGGGAAAATGGG
>TU1750685
CGGCACGTCACACTTTCGCGAAACAGAGGAATGTCTCCAACTAGTTAGCTGGGTACGAATAAAATAATTTACGCTCATAATGTCGGTCTTTCATGACGAAGTTGAGATCGAGGACTTTGAATATGACGAGGATGAAGAGACATACTATTTTCCCTGCCCATGTGGCGACAGATTTGCCATAACCAAAGAGGATTTGGAAAATGGTGAAGAGGTGGCGACGTGTCCGAGCTGCTCGCTCATTGTTAAAGTAATCTACGACAAGGAGGAATTTATGTCTGGGGAGATAATCGAAGCACCAACTACAGAGAGCAGATTGCAATTGACTCCGTCCTCCTGACAGCGATGATACATCCCCCTTCATTTTCTCATCTCCCATCAGTAAAAGTGGACCCTGCAGCATTTGTATGTGCTTCCACACAACACAAATAAACATTATGAACGATATGCTTCACTGGTGAGGTCTGGGATGGAGGATTCTCAGGATTCATTCACATGTTCCTGGCATTGGTTTTGCAGAGTCACGTAAAGGACCCTAACCACCACTATTTGCACAACATATTTAAATAAATCCTTTATTCTTTTAAGTCTTTCACTCCC

Function

NR:

description
DPH3 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571326.2 False 930 mRNA 0.42 3 23542411 23543631
TU1750685 True 597 TUCP 0.43 3 23542606 23543493

Neighbor

gene id symbol gene type direction distance location
LOC110495851 LOC106574449 coding downstream 730 23479558 ~ 23541681 (-)
LOC110496920 LOC106574445 coding downstream 63846 23459836 ~ 23478565 (-)
LOC110495850 LOC106574444 coding downstream 179618 23338757 ~ 23362793 (-)
LOC110495846 LOC106574440 coding downstream 277324 23249040 ~ 23265087 (-)
LOC110495845 LOC106574439 coding downstream 319001 23213531 ~ 23223410 (-)
trnat-ugu-38 NA coding upstream 98240 23641871 ~ 23641943 (-)
wdsub1 LOC106574230 coding upstream 108806 23652437 ~ 23661732 (-)
LOC110495859 LOC106574231 coding upstream 125523 23669154 ~ 23750347 (-)
LOC110495860 LOC106574232 coding upstream 237185 23780816 ~ 23821326 (-)
LOC110497101 LOC106574236 coding upstream 278197 23821828 ~ 23846147 (-)
G1529099 NA non-coding downstream 137405 23404735 ~ 23405006 (-)
G1529089 NA non-coding downstream 147928 23394173 ~ 23394483 (-)
G1529084 NA non-coding downstream 153938 23388236 ~ 23388473 (-)
G1529083 NA non-coding downstream 154650 23387506 ~ 23387761 (-)
G1529062 NA non-coding downstream 185221 23356991 ~ 23357190 (-)
G1529193 NA non-coding upstream 21687 23565318 ~ 23570351 (-)
G1529206 LOC106574228 non-coding upstream 47370 23591001 ~ 23591228 (-)
G1529222 NA non-coding upstream 69974 23613605 ~ 23614006 (-)
G1529250 NA non-coding upstream 118980 23662611 ~ 23662833 (-)
G1529252 NA non-coding upstream 121201 23664832 ~ 23666137 (-)
LOC110495841 LOC106574435 other downstream 373820 23008547 ~ 23168591 (-)
G1528018 NA other downstream 656578 22872045 ~ 22885833 (-)
G1527230 NA other downstream 1279949 22262056 ~ 22262462 (-)
LOC110497093 LOC106574562 other downstream 2970544 20558557 ~ 20595753 (-)
LOC110497104 LOC106574262 other upstream 736107 24279738 ~ 24371432 (-)
G1529613 NA other upstream 849744 24393375 ~ 24393684 (-)
G1530967 LOC106574270 other upstream 1606437 25150068 ~ 25150994 (-)
G1531142 NA other upstream 1975790 25519421 ~ 25523180 (-)
LOC110495915 NA other upstream 2029807 25571910 ~ 25574981 (-)

Expression


Co-expression Network