LOC110495853 (LOC106574225)


Basic Information

Item Value
gene id LOC110495853
gene name LOC106574225
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 23553850 ~ 23564696 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571328.2
atgtgtgcttgtgtgggcATGCCTGTGTATCTGTGTGACAGTATTCTCTCTATAATATACAGTGAAGCCATAAAAGGCCACTGTTTGTCAGATTGTGGGGAGATGTAAAGTTCTGGCTCCAGTGTAGCTCAGTAGTTACGTTATATTTATAGCCTCAGATCAAGTGGTCCGGCCCACCCCAGTCACCCCACTGCCCAGTCCCCGAGTACTGCTGCTCTTAAACCAATCAAGCAGAGACTAGGACTGGTCTTCTCCCTCAACTCTCTGTCTGCTCTGACTCCTCTGGCAAGAGGCACACAGGCTGAGGCTGCCCCACTCACAGGTAGGAGGACACTTCTCCGGACACTTCTTTCTCTACTCTGGCTCTGGTCCACTGTTCTGGCAAGAGAGCAAAGGAAGAGATTTGATCCAAAATGGCGGAACGCTACGACTGCCATTACTGCAAGGAGTCCCTGTTTGGGAGGAAGTATGTGCTCAGGGAAGAGAACCCCTACTGTGTGAAGTGCTACGAGAACCTGTACTCTAACTCCTGTGAAGAGTGCAAGAAGTCCATTGGCTGCAGCAGCAGGGACCTGTCCTACAAGGACCGCCACTGGCATGACGACTGCTTCCACTGCTTCAAGTGTAGCCGCTCCCTGGTGGACAAGCCCTTCTCCACCAAGGACGACCAGCTGCTCTGCACCGAGTGCTACTCCAACGAGTACTCCTCCAAGTGCCACGAGTGCAAGAAGACCATCATGCCAGGCTCCAAGAAGATGGAGCATAAGGGCAACAGCTGGCATGAGGCCTGCTTTACTTGCCAGCACTGCCAGCAGCCAATCGGCACCAAGAACTTCATCAATAAGGACAACAGTAACTACTGCGTGCCCTGTTACGAGAAGCAGTTTGCCATGCAGTGTATCCAATGCAAGAAGCCAATCACCACAGGCGGGGTGACCTATCGCGATCAGCCGTGGCATAAGGACTGCTTCCTGTGCACCGGTTGTAAGCAGCAGCTGTCTGGCCAGCGGTTCACCTCTCGGGACGACTTTGCCTACTGCCTGAACTGCTTCTGCAACCTGTATGCCAAGAAGTGTGCCACCTGCACCAGCCCTATCAGTGGTCTGGGTGGCAGCAAGTACATCTCGTTTGAAGAGCGCCAGTGGCACAACAACTGCTTCAACTGCAAGAAGTGCTCCATCTCCCTGGTGGGAAGGGGCTTTCTGACGGCCCGCGATGAGATCATGTGTCCTGAGTGTGGCAAATACGTCTAAATGCTGTGTGCCAGGATGAAGCGTCAAAGCCAGAGATGGCAAAGATGCAAGAGAATATAGGTCTACTCCTACTAACGTTTCATTTATTAGAATGATGTATTTATTCAATAATATACATTTCAGACTAACCCAAAGGGCTTTCTGCATGCACCGGCCTCAGATTGATACAGTATGTTGTCTGATGAATTGAGCACAAATTGCATTAGATTCTTAGAAAGAGAGATATAATTTTGATGTATTTTTAACAAAATAACAACTTTGTCTGAGGTTTGTTACCATTGAAACGTTTaactattgtattgtgttgtatatgTTAGGATAATCATCCGTGACACACCTATAACAGGAGTTGTACTTTTCATTAAAGCAGTGAAATCTAACGAGAACATGACATGTACCTGCACTCTAAATGTGAAATAAAGCATTGTAAAGGCAATTCATTGATAGACTG
>XM_021571327.2
gcttgtgtgggcATGCCTGTGTATCTGTGTGACAGTATTCTCTCTATAATATACAGTGAAGCCATAAAAGGCCACTGTTTGTCAGATTGTGGGGAGATGTAAAGTTCTGGCTCCAGTGTAGCTCAGTAGTTACGTTATATTTATAGCCTCAGATCAAGTGGTCCGGCCCACCCCAGTCACCCCACTGCCCAGTCCCCGAGTACTGCTGCTCTTAAACCAATCAAGCAGAGACTAGGACTGGTCTTCTCCCTCAACTCTCTGTCTGCTCTGACTCCTCTGGCAAGAGGCACACAGGCTGAGGCTGCCCCACTCACAGGCAAGAGAGCAAAGGAAGAGATTTGATCCAAAATGGCGGAACGCTACGACTGCCATTACTGCAAGGAGTCCCTGTTTGGGAGGAAGTATGTGCTCAGGGAAGAGAACCCCTACTGTGTGAAGTGCTACGAGAACCTGTACTCTAACTCCTGTGAAGAGTGCAAGAAGTCCATTGGCTGCAGCAGCAGGGACCTGTCCTACAAGGACCGCCACTGGCATGACGACTGCTTCCACTGCTTCAAGTGTAGCCGCTCCCTGGTGGACAAGCCCTTCTCCACCAAGGACGACCAGCTGCTCTGCACCGAGTGCTACTCCAACGAGTACTCCTCCAAGTGCCACGAGTGCAAGAAGACCATCATGCCAGGCTCCAAGAAGATGGAGCATAAGGGCAACAGCTGGCATGAGGCCTGCTTTACTTGCCAGCACTGCCAGCAGCCAATCGGCACCAAGAACTTCATCAATAAGGACAACAGTAACTACTGCGTGCCCTGTTACGAGAAGCAGTTTGCCATGCAGTGTATCCAATGCAAGAAGCCAATCACCACAGGCGGGGTGACCTATCGCGATCAGCCGTGGCATAAGGACTGCTTCCTGTGCACCGGTTGTAAGCAGCAGCTGTCTGGCCAGCGGTTCACCTCTCGGGACGACTTTGCCTACTGCCTGAACTGCTTCTGCAACCTGTATGCCAAGAAGTGTGCCACCTGCACCAGCCCTATCAGTGGTCTGGGTGGCAGCAAGTACATCTCGTTTGAAGAGCGCCAGTGGCACAACAACTGCTTCAACTGCAAGAAGTGCTCCATCTCCCTGGTGGGAAGGGGCTTTCTGACGGCCCGCGATGAGATCATGTGTCCTGAGTGTGGCAAATACGTCTAAATGCTGTGTGCCAGGATGAAGCGTCAAAGCCAGAGATGGCAAAGATGCAAGAGAATATAGGTCTACTCCTACTAACGTTTCATTTATTAGAATGATGTATTTATTCAATAATATACATTTCAGACTAACCCAAAGGGCTTTCTGCATGCACCGGCCTCAGATTGATACAGTATGTTGTCTGATGAATTGAGCACAAATTGCATTAGATTCTTAGAAAGAGAGATATAATTTTGATGTATTTTTAACAAAATAACAACTTTGTCTGAGGTTTGTTACCATTGAAACGTTTaactattgtattgtgttgtatatgTTAGGATAATCATCCGTGACACACCTATAACAGGAGTTGTACTTTTCATTAAAGCAGTGAAATCTAACGAGAACATGACATGTACCTGCACTCTAAATGTGAAATAAAGCATTGTAAAGGCAATTCATTGATAGACTG

Function

NR:

description
four and a half LIM domains protein 2-like

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K14380 FHL2; four and a half LIM domains protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571328.2 False 1704 mRNA 0.48 6 23553850 23564696
XM_021571327.2 True 1639 mRNA 0.48 6 23553856 23564696

Neighbor

gene id symbol gene type direction distance location
LOC110495849 LOC106574443 coding upstream 211309 23318743 ~ 23342541 (+)
LOC110495847 LOC106574438 coding upstream 279918 23268875 ~ 23273932 (+)
LOC110495843 LOC106574436 coding upstream 355612 23185424 ~ 23198238 (+)
LOC110495835 en1 coding upstream 780176 22769391 ~ 22773674 (+)
LOC110495834 LOC106574432 coding upstream 801044 22750688 ~ 22752806 (+)
LOC110495857 LOC106575156 coding downstream 891 23565587 ~ 23570089 (+)
LOC110495855 LOC106574229 coding downstream 5735 23537127 ~ 23586847 (+)
LOC110495854 LOC106574228 coding downstream 22915 23587611 ~ 23651133 (+)
LOC110495861 LOC106574235 coding downstream 204852 23769548 ~ 23779632 (+)
LOC110495865 LOC106574241 coding downstream 347283 23911979 ~ 23918645 (+)
G1528437 NA non-coding upstream 27983 23525518 ~ 23525867 (+)
G1528353 NA non-coding upstream 149663 23403929 ~ 23404187 (+)
G1528350 NA non-coding upstream 156103 23397518 ~ 23397747 (+)
G1528346 NA non-coding upstream 159488 23394116 ~ 23394362 (+)
G1528328 NA non-coding upstream 184556 23369081 ~ 23369294 (+)
G1528508 NA non-coding downstream 115054 23679750 ~ 23681697 (+)
G1528564 NA non-coding downstream 186080 23750776 ~ 23751144 (+)
G1528575 NA non-coding downstream 202981 23767677 ~ 23768235 (+)
G1528536 NA non-coding downstream 215647 23780343 ~ 23782312 (+)
G1528534 NA non-coding downstream 257153 23821849 ~ 23823652 (+)
G1528194 NA other upstream 392559 23158833 ~ 23161291 (+)
LOC110497098 LOC106574424 other upstream 942398 22599016 ~ 22641368 (+)
G1525320 NA other upstream 2796438 20756691 ~ 20757412 (+)
G1524181 LOC106574559 other upstream 3070137 20473360 ~ 20483713 (+)
G1524124 LOC106574554 other upstream 3246946 20305705 ~ 20306904 (+)
LOC110495887 LOC108430494 other downstream 956039 24520697 ~ 24525649 (+)
G1530367 NA other downstream 1440065 25004761 ~ 25005609 (+)
LOC110495895 LOC106574270 other downstream 1584287 25133210 ~ 25157338 (+)
G1530785 NA other downstream 2001775 25566471 ~ 25571346 (+)
G1530923 LOC106574292 other downstream 2273810 25838506 ~ 25840353 (+)

Expression


Co-expression Network