LOC110495857 (LOC106575156)


Basic Information

Item Value
gene id LOC110495857
gene name LOC106575156
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 23565587 ~ 23570089 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571336.2
CATGACCGGATGTACATGGAATGTGCAGCAGGAAATGCTAACCGCATTAGCTAACCATCCATATCGAGGTCTCCACTCTCACCGGCACACGAATTGTCTAATTCTGGAATCATCATCAGCCAAAATGAGTGCTGCTCCCAACCACAGACGGACCAAGCCTGGTGGCGTGAAGACAGGCTATCCAGGCCAAGCCCCCGCCAACGGTGTTACGGGACCCACTTCCCAGATCCCCGGGCTGTGCCAGGAAGCCACTGAGGGTGCTCCTGAGGCCAGGACCAGCGGAAGGCGTGTGGGAATATTCGACTCCGACTCCGACTATGTTAAACTTGCCAAAGGAGGGGGACAGAAGGGTTTACTGTGGCATGAGGACAACAAGGAGGAGGCTAGGCCTAATAAATCCTACAACTCACCTGATTGGTTCTCAGCCGAATCTCAGAGCGGAAGTAAAGCAGCATCCCCTGATGATTGTCAAGGATACGGAAAAAGGCAACCTCTAGCTGCTCCCTTCGGTACTGATGATATTTCAGCCTGGGAAAGGGAGAGTGATAGCTATAAAGAGAAGAACCCCACAGTCACTGATGCGTCCAGCCAAATGGAGAACATGTCTCTAAGCCAAGGTGGTTATATGGAGGTCAACAAATACAAGAAGACTCAAAGTGATTTTACTATGGACAGGTCCGTTGAGAAGAAAACTGCTCCCGTGAGCATGTCCAAGCTGCTGAGCTTTGGCTACATAGAGGATGAGAAGAAGTCCACCAACGAGGATGACTGCTCAAGTGTGACCTCTGAACAGACGAGCACCATCGCACCTGAGGATGAAGACCTGGAATagggaggagaacagaagaggtcCATCTGGGGTAGAAAACAACAGTggatacacacacccacacacatgccATTCACTCTacggtctgttctctctctctctctctccctgagtgaCACACTTTCTCTCATTACTGTACATCCCAACTGTTATGTTTTGTAATTATGCAACGGTACCTTCTCtgttcatgtatttatttatttatttgtctttTGTTTTTTTACTCCGTGTAATGTTGTTCTCAGACCACCGACACAGCTTGTTGATGCTTGTCATGTTTATATTATCGTTCTTGAATTGGAAGATGATTTGTGTGACTATGAAACAGTACTGTACACTGGAGTTTCTATTTGTGGTGTAAAAAATGGTTTCGGTGCTGTTGAAGATTGTTTGTGAACAAGGCCTACTGTACGGGACACACAAAGGAGACGTTTGTGGCTCGCGCTATTCAGCTCCCATGTTGAATAGGATCGGAAAGCTCTGCCAAAAAAACATGGAAACATGGGTGCTAAGTGGTTCACTTGTCATGGGAAGGCAGACATGGTTTGGAATGGAAGACAGAAAATGCCAATGAATCTACTTCATTCGATCTCATACCAGGATATGGTTCAGTGTTATGAAGTTATGGTGGCCGTTGATTCCATAGATAGATAGAAACCTTTTGTGATGTTCTAACAACGGTGCCAATTCATTCTACATATTTAGGGAATAGTGGCAATTGTATCGTGCAATGATATTGTTTACTTTGAAGTAAAAATGGTTTTGCTTTGACGTGAagatagggctgggcgatatggccaaaactATATTACTATAGTTTACAACGGTGTGGTGGTATTTGACTGTATTTTATGTTTCTGAATAATACAAGATCCAAGTGTGTTTTATTATTAGTGCATGAGACTGGAATGGCAACAAGTTATTTTAACAGGCTTTCTTCATTACGGTTTTATTCTTAAGGACAAAAGTGACATTGAAATAGTCCAATGTGTTGAACTGTTCAGTTATTTAGcacttaataaaaataaaaacattttttgataGATGACATGTTGATCCAGACCGGTATTCACgctatatcgcccagccctacctgAAGGTACATGTGGCTTGGAGACATTTTCCACTTAGCACAGTAAATATACACAGTAATAATCTTCCCTAGTTTTTCATTGATGGATAGGTCCACTTTATTAACACAGTCAATGTGTGATTCTCACATCTTTCTTAAAGTGATGAGTGAATATGTCATTAAAATAAATTAGCATGTGCATGTA

Function

NR:

description
uncharacterized protein C7orf57 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571336.2 True 2106 mRNA 0.43 8 23565587 23570089

Neighbor

gene id symbol gene type direction distance location
LOC110495853 LOC106574225 coding upstream 891 23553850 ~ 23564696 (+)
LOC110495849 LOC106574443 coding upstream 223046 23318743 ~ 23342541 (+)
LOC110495847 LOC106574438 coding upstream 291655 23268875 ~ 23273932 (+)
LOC110495843 LOC106574436 coding upstream 367349 23185424 ~ 23198238 (+)
LOC110495835 en1 coding upstream 791913 22769391 ~ 22773674 (+)
LOC110495855 LOC106574229 coding downstream 342 23537127 ~ 23586847 (+)
LOC110495854 LOC106574228 coding downstream 17522 23587611 ~ 23651133 (+)
LOC110495861 LOC106574235 coding downstream 199459 23769548 ~ 23779632 (+)
LOC110495865 LOC106574241 coding downstream 341890 23911979 ~ 23918645 (+)
LOC110495871 sumo1 coding downstream 423933 23994022 ~ 23997602 (+)
G1528437 NA non-coding upstream 39720 23525518 ~ 23525867 (+)
G1528353 NA non-coding upstream 161400 23403929 ~ 23404187 (+)
G1528350 NA non-coding upstream 167840 23397518 ~ 23397747 (+)
G1528346 NA non-coding upstream 171225 23394116 ~ 23394362 (+)
G1528328 NA non-coding upstream 196293 23369081 ~ 23369294 (+)
G1528508 NA non-coding downstream 109661 23679750 ~ 23681697 (+)
G1528564 NA non-coding downstream 180687 23750776 ~ 23751144 (+)
G1528575 NA non-coding downstream 197588 23767677 ~ 23768235 (+)
G1528536 NA non-coding downstream 210254 23780343 ~ 23782312 (+)
G1528534 NA non-coding downstream 251760 23821849 ~ 23823652 (+)
G1528194 NA other upstream 404296 23158833 ~ 23161291 (+)
LOC110497098 LOC106574424 other upstream 954135 22599016 ~ 22641368 (+)
G1525320 NA other upstream 2808175 20756691 ~ 20757412 (+)
G1524181 LOC106574559 other upstream 3081874 20473360 ~ 20483713 (+)
G1524124 LOC106574554 other upstream 3258683 20305705 ~ 20306904 (+)
LOC110495887 LOC108430494 other downstream 950646 24520697 ~ 24525649 (+)
G1530367 NA other downstream 1434672 25004761 ~ 25005609 (+)
LOC110495895 LOC106574270 other downstream 1578894 25133210 ~ 25157338 (+)
G1530785 NA other downstream 1996382 25566471 ~ 25571346 (+)
G1530923 LOC106574292 other downstream 2268417 25838506 ~ 25840353 (+)

Expression


Co-expression Network