wdsub1 (LOC106574230)


Basic Information

Item Value
gene id wdsub1
gene name LOC106574230
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 23652437 ~ 23661732 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571338.2
AAGCCTTTCTCATCCCTGGATTGACGGATTCTTCAAGACCAACTCAAATGGTGTCCCTGATCTGCACCCTGCAAGACCATCGTGACGATGTCAACTGGTGCGCCTTCTCCCCGACACTGCTGGCCACCTGTTCAGCTGACAAAACCGTACGAATTTACAACACCCAAGACTTTTCCGAAGTCCCATACTCCCCGCTCTCTGGCCACGGCTATGGCGTCCATTGTTGTTGCTTCAGCGCCTGTGGTCAGTATTTAGCCTCGTGTTCAACTGATGGTTCCACAGTTGTGTGGTCAACGGACACGGGTGAGATAGAGGCAGTGCTGGAGCATCCGGGTCGGAACCCCGTCAGGGTCTGCGCCTTCTCGCCCGACTCTTCACACCTGGTTTCGGGGGCGTCCGATGGTACTTTAGGTCTTTGGGATTTCCGTACGAAAACATTGCACAGGACTGGGGCAGTGAATGACACCACTATGGTGGCCTGCTCCTTCACCCCCTGTGGCCAGATGTTTGTCACTGGATCTACGTATGGGGACCTCAGGCTGTGGGACCTGGACATGAACCAGCTCCATGCGGAGAAGAACACTCACGACTTGGGGGTCACCTGCTGCTGCTTTGGCCCCAAGATCCTCAGTGGTAGCGGTACGGTGCACTTCCGCCTGGCCTCCTGTGGACAAGACAGCACACTGAAGATATGGACCGTCTCCAGGTCCAACGCAGGCAGCTGTAAGATGCAGCTGCTGCACACCCTGACCGGCCAGTCTGCCCCGGTGCTCTCCTGTGCTTTCTCTGCGGACGGACAGCTGCTTGTGTCTGGCTCAGTGGACAAAACAGTCACAGTGTACGATGCTagCCAGGGGACTTTGCTCTACACATTGAACCAACACGAGAGGTACGTGACGGCGTGTGCCTTCTCTCCCAGCACACCTCTGTTCGCCACGGGTTCTATGGACAAGACTGTCAATATATGGAGAGTAGAGGATGGACACAGGGGCCATGaagGCAAATCTTTACCTGTTGAAACTGCAACATTCTCATGCGAAGGCAGAAAGTTGCTGTGTCACTCCAGGCTTCTGGTCAGTGATTGGTCAGAGGAGGACGTGGGGGCGTGGCTGTGTGAGGAGGGGCTGCAGGCGCTGGTGGAACACTTCAAGGCAAACAACATAGATGGAGCAGAGCTCATCAGTCTGACCAAGGAGACACTGGCCTCAGAACTCAACATAGAGTCTGTGGGATTGCGCAGTAAGGTCCTGAGgaaggtggaggagctgaaggCGGGGTGTTTGTGTACCGGTGTTCCTGATGAGTACCTCTGTCCAATCACCAGGGAGTTGATGAAGGACCCTGTTATTGCTGCAGATGGGTACTCCTATGAGAGGGAAGCGATTGAGAGCTGGATCGCAACCAAGAATCGTTCCAGCCCCATGACCAACCTGCCCTTACAGACAACACTTCTGACCCCAAACCGAACCCTGAAGATGGCTATTGGACGCTGGAGGACCAGCCAGTGAGAAAGAGGGCTGCATCGGCATCTTCTACATCCATTTCAATCTGAAGGCGGGTCTATCCCTCAGTTAACTTCTGACCAAAAGTAGGCTCATAGTACATAAAGCTAAATATGATGATGTTTTCAGGTTGACCATACTGAGCTTCGATTCAACCCCTCACTGTGTCTGTTGGGATGAAACTGCTTTAGAATGTAAATATTTATAGCCGATGAGAcattctaatatatatatatatatattctcaaaCTCATGCATGTTGACCATGTTGAACTCTGCTAtttactctactctctactctgctGCTTTAGCTCCAGAACCATTtcgatgtacagtgcattcggaac
>XM_036952297.1
gatagcgcgctggacttcgggctagaaggtcgagGGATTCTTCAAGACCAACTCAAATGGTGTCCCTGATCTGCACCCTGCAAGACCATCGTGACGATGTCAACTGGTGCGCCTTCTCCCCGACACTGCTGGCCACCTGTTCAGCTGACAAAACCGTACGAATTTACAACACCCAAGACTTTTCCGAAGTCCCATACTCCCCGCTCTCTGGCCACGGCTATGGCGTCCATTGTTGTTGCTTCAGCGCCTGTGGTCAGTATTTAGCCTCGTGTTCAACTGATGGTTCCACAGTTGTGTGGTCAACGGACACGGGTGAGATAGAGGCAGTGCTGGAGCATCCGGGTCGGAACCCCGTCAGGGTCTGCGCCTTCTCGCCCGACTCTTCACACCTGGTTTCGGGGGCGTCCGATGGTACTTTAGGTCTTTGGGATTTCCGTACGAAAACATTGCACAGGACTGGGGCAGTGAATGACACCACTATGGTGGCCTGCTCCTTCACCCCCTGTGGCCAGATGTTTGTCACTGGATCTACGTATGGGGACCTCAGGCTGTGGGACCTGGACATGAACCAGCTCCATGCGGAGAAGAACACTCACGACTTGGGGGTCACCTGCTGCTGCTTTGGCCCCAAGATCCTCAGTGGTAGCGGTACGGTGCACTTCCGCCTGGCCTCCTGTGGACAAGACAGCACACTGAAGATATGGACCGTCTCCAGGTCCAACGCAGGCAGCTGTAAGATGCAGCTGCTGCACACCCTGACCGGCCAGTCTGCCCCGGTGCTCTCCTGTGCTTTCTCTGCGGACGGACAGCTGCTTGTGTCTGGCTCAGTGGACAAAACAGTCACAGTGTACGATGCTagCCAGGGGACTTTGCTCTACACATTGAACCAACACGAGAGGTACGTGACGGCGTGTGCCTTCTCTCCCAGCACACCTCTGTTCGCCACGGGTTCTATGGACAAGACTGTCAATATATGGAGAGTAGAGGATGGACACAGGGGCCATGaagGCAAATCTTTACCTGTTGAAACTGCAACATTCTCATGCGAAGGCAGAAAGTTGCTGTGTCACTCCAGGCTTCTGGTCAGTGATTGGTCAGAGGAGGACGTGGGGGCGTGGCTGTGTGAGGAGGGGCTGCAGGCGCTGGTGGAACACTTCAAGGCAAACAACATAGATGGAGCAGAGCTCATCAGTCTGACCAAGGAGACACTGGCCTCAGAACTCAACATAGAGTCTGTGGGATTGCGCAGTAAGGTCCTGAGgaaggtggaggagctgaaggCGGGGTGTTTGTGTACCGGTGTTCCTGATGAGTACCTCTGTCCAATCACCAGGGAGTTGATGAAGGACCCTGTTATTGCTGCAGATGGGTACTCCTATGAGAGGGAAGCGATTGAGAGCTGGATCGCAACCAAGAATCGTTCCAGCCCCATGACCAACCTGCCCTTACAGACAACACTTCTGACCCCAAACCGAACCCTGAAGATGGCTATTGGACGCTGGAGGACCAGCCAGTGAGAAAGAGGGCTGCATCGGCATCTTCTACATCCATTTCAATCTGAAGGCGGGTCTATCCCTCAGTTAACTTCTGACCAAAAGTAGGCTCATAGTACATAAAGCTAAATATGATGATGTTTTCAGGTTGACCATACTGAGCTTCGATTCAACCCCTCACTGTGTCTGTTGGGATGAAACTGCTTTAGAATGTAAATATTTATAGCCGATGAGAcattctaatatatatatatatatattctcaaaCTCATGCATGTTGACCATGTTGAACTCTGCTAtttactctactctctactctgctGCTTTAGCTCCAGAACCATTtcgatgtacagtgcattcggaac
>XM_021571337.2
agtgatcttgaGGTCAGTTAGTCGAAGCTTTAGAgctctgagttggatgaccgttcaaaacgcaTTATCCAATTCAGAGCTAGTTTTTTTcgcgagttcccagttgtcttgaacgcactgatgTTTGAAGTGGAGATTTCCGAGCTCCTAGTTGTTTGAACGCGGCAATACCCTGGTCACTGCAGCTACCCATAGACGCATATTTCTGGGGGGAAGGTCATTACGGTCAGCTGATCATATGACAGCGTGCGCATGACCAGGAAGTAAACATTGAACAGAGACACGCAAAGAGGGATTCTTCAAGACCAACTCAAATGGTGTCCCTGATCTGCACCCTGCAAGACCATCGTGACGATGTCAACTGGTGCGCCTTCTCCCCGACACTGCTGGCCACCTGTTCAGCTGACAAAACCGTACGAATTTACAACACCCAAGACTTTTCCGAAGTCCCATACTCCCCGCTCTCTGGCCACGGCTATGGCGTCCATTGTTGTTGCTTCAGCGCCTGTGGTCAGTATTTAGCCTCGTGTTCAACTGATGGTTCCACAGTTGTGTGGTCAACGGACACGGGTGAGATAGAGGCAGTGCTGGAGCATCCGGGTCGGAACCCCGTCAGGGTCTGCGCCTTCTCGCCCGACTCTTCACACCTGGTTTCGGGGGCGTCCGATGGTACTTTAGGTCTTTGGGATTTCCGTACGAAAACATTGCACAGGACTGGGGCAGTGAATGACACCACTATGGTGGCCTGCTCCTTCACCCCCTGTGGCCAGATGTTTGTCACTGGATCTACGTATGGGGACCTCAGGCTGTGGGACCTGGACATGAACCAGCTCCATGCGGAGAAGAACACTCACGACTTGGGGGTCACCTGCTGCTGCTTTGGCCCCAAGATCCTCAGTGGTAGCGGTACGGTGCACTTCCGCCTGGCCTCCTGTGGACAAGACAGCACACTGAAGATATGGACCGTCTCCAGGTCCAACGCAGGCAGCTGTAAGATGCAGCTGCTGCACACCCTGACCGGCCAGTCTGCCCCGGTGCTCTCCTGTGCTTTCTCTGCGGACGGACAGCTGCTTGTGTCTGGCTCAGTGGACAAAACAGTCACAGTGTACGATGCTagCCAGGGGACTTTGCTCTACACATTGAACCAACACGAGAGGTACGTGACGGCGTGTGCCTTCTCTCCCAGCACACCTCTGTTCGCCACGGGTTCTATGGACAAGACTGTCAATATATGGAGAGTAGAGGATGGACACAGGGGCCATGaagGCAAATCTTTACCTGTTGAAACTGCAACATTCTCATGCGAAGGCAGAAAGTTGCTGTGTCACTCCAGGCTTCTGGTCAGTGATTGGTCAGAGGAGGACGTGGGGGCGTGGCTGTGTGAGGAGGGGCTGCAGGCGCTGGTGGAACACTTCAAGGCAAACAACATAGATGGAGCAGAGCTCATCAGTCTGACCAAGGAGACACTGGCCTCAGAACTCAACATAGAGTCTGTGGGATTGCGCAGTAAGGTCCTGAGgaaggtggaggagctgaaggCGGGGTGTTTGTGTACCGGTGTTCCTGATGAGTACCTCTGTCCAATCACCAGGGAGTTGATGAAGGACCCTGTTATTGCTGCAGATGGGTACTCCTATGAGAGGGAAGCGATTGAGAGCTGGATCGCAACCAAGAATCGTTCCAGCCCCATGACCAACCTGCCCTTACAGACAACACTTCTGACCCCAAACCGAACCCTGAAGATGGCTATTGGACGCTGGAGGACCAGCCAGTGAGAAAGAGGGCTGCATCGGCATCTTCTACATCCATTTCAATCTGAAGGCGGGTCTATCCCTCAGTTAACTTCTGACCAAAAGTAGGCTCATAGTACATAAAGCTAAATATGATGATGTTTTCAGGTTGACCATACTGAGCTTCGATTCAACCCCTCACTGTGTCTGTTGGGATGAAACTGCTTTAGAATGTAAATATTTATAGCCGATGAGAcattctaatatatatatatatatattctcaaaCTCATGCATGTTGACCATGTTGAACTCTGCTAtttactctactctctactctgctGCTTTAGCTCCAGAACCATTtcgatgtacagtgcattcggaac
>XM_021571340.2
cagtgatcttgaGGTCAGTTAGTCGAAGCTTTAGAgctctgagttggatgaccgttcaaaacgcaTTATCCAATTCAGAGCTAGTTTTTTTcgcgagttcccagttgtcttgaacgcactgatgTTTGAAGTGGAGATTTCCGAGCTCCTAGTTGTTTGAACGCGGCAATACCCTGGTCACTGCAGCTACCCATAGACGCATATTTCTGGGGGGAAGGTCATTACGGTCAGCTGATCATATGACAGCGTGCGCATGACCAGGAAGTAAACATTGAACAGAGACACGCAAAGAGGGATTCTTCAAGACCAACTCAAATGGTGTCCCTGATCTGCACCCTGCAAGACCATCGTGACGATGTCAACTGGTGCGCCTTCTCCCCGACACTGCTGGCCACCTGTTCAGCTGACAAAACCGTACGAATTTACAACACCCAAGACTTTTCCGAAGTCCCATACTCCCCGCTCTCTGGCCACGGCTATGGCGTCCATTGTTGTTGCTTCAGCGCCTGTGGTCAGTATTTAGCCTCGTGTTCAACTGATGGTTCCACAGTTGTGTGGTCAACGGACACGGGTGAGATAGAGGCAGTGCTGGAGCATCCGGGTCGGAACCCCGTCAGGGTCTGCGCCTTCTCGCCCGACTCTTCACACCTGGTTTCGGGGGCGTCCGATGGTACTTTAGGTCTTTGGGATTTCCGTACGAAAACATTGCACAGGACTGGGGCAGTGAATGACACCACTATGGTGGCCTGCTCCTTCACCCCCTGTGGCCAGATGTTTGTCACTGGATCTACGTATGGGGACCTCAGGCTGTGGGACCTGGACATGAACCAGCTCCATGCGGAGAAGAACACTCACGACTTGGGGGTCACCTGCTGCTGCTTTGGCCCCAAGATCCTCAGTGGTAGCGGTACGGTGCACTTCCGCCTGGCCTCCTGTGGACAAGACAGCACACTGAAGATATGGACCGTCTCCAGGTCCAACGCAGGCAGCTGTAAGATGCAGCTGCTGCACACCCTGACCGGCCAGTCTGCCCCGGTGCTCTCCTGTGCTTTCTCTGCGGACGGACAGCTGCTTGTGTCTGGCTCAGTGGACAAAACAGTCACAGTGTACGATGCTagCCAGGGGACTTTGCTCTACACATTGAACCAACACGAGAGGTACGTGACGGCGTGTGCCTTCTCTCCCAGCACACCTCTGTTCGCCACGGGTTCTATGGACAAGACTGTCAATATATGGAGAGTAGAGGATGGACACAGGGGCCATGTTGAAACTGCAACATTCTCATGCGAAGGCAGAAAGTTGCTGTGTCACTCCAGGCTTCTGGTCAGTGATTGGTCAGAGGAGGACGTGGGGGCGTGGCTGTGTGAGGAGGGGCTGCAGGCGCTGGTGGAACACTTCAAGGCAAACAACATAGATGGAGCAGAGCTCATCAGTCTGACCAAGGAGACACTGGCCTCAGAACTCAACATAGAGTCTGTGGGATTGCGCAGTAAGGTCCTGAGgaaggtggaggagctgaaggCGGGGTGTTTGTGTACCGGTGTTCCTGATGAGTACCTCTGTCCAATCACCAGGGAGTTGATGAAGGACCCTGTTATTGCTGCAGATGGGTACTCCTATGAGAGGGAAGCGATTGAGAGCTGGATCGCAACCAAGAATCGTTCCAGCCCCATGACCAACCTGCCCTTACAGACAACACTTCTGACCCCAAACCGAACCCTGAAGATGGCTATTGGACGCTGGAGGACCAGCCAGTGAGAAAGAGGGCTGCATCGGCATCTTCTACATCCATTTCAATCTGAAGGCGGGTCTATCCCTCAGTTAACTTCTGACCAAAAGTAGGCTCATAGTACATAAAGCTAAATATGATGATGTTTTCAGGTTGACCATACTGAGCTTCGATTCAACCCCTCACTGTGTCTGTTGGGATGAAACTGCTTTAGAATGTAAATATTTATAGCCGATGAGAcattctaatatatatatatatatattctcaaaCTCATGCATGTTGACCATGTTGAACTCTGCTAtttactctactctctactctgctGCTTTAGCTCCAGAACCATTtcgatgtacagtgcattcggaac
>XM_021571339.2
tcagtgatcttgaGGTCAGTTAGTCGAAGCTTTAGAgctctgagttggatgaccgttcaaaacgcaTTATCCAATTCAGAGCTAGTTTTTTTcgcgagttcccagttgtcttgaacgcactgatgTTTGAAGTGGAGATTTCCGAGCTCCTAGTTGTTTGAACGCGGCAATACCCTGGTCACTGCAGCTACCCATAGACGCATATTTCTGGGGGGAAGGTCATTACGGTCAGCTGATCATATGACAGCGTGCGCATGACCAGGAAGTAAACATTGAACAGAGACACGCAAAGAGGGATTCTTCAAGACCAACTCAAATGGTGTCCCTGATCTGCACCCTGCAAGACCATCGTGACGATGTCAACTGGTGCGCCTTCTCCCCGACACTGCTGGCCACCTGTTCAGCTGACAAAACCGTACGAATTTACAACACCCAAGACTTTTCCGAAGTCCCATACTCCCCGCTCTCTGGCCACGGCTATGGCGTCCATTGTTGTTGCTTCAGCGCCTGTGGTCAGTATTTAGCCTCGTGTTCAACTGATGGTTCCACAGTTGTGTGGTCAACGGACACGGGTGAGATAGAGGCAGTGCTGGAGCATCCGGGTCGGAACCCCGTCAGGGTCTGCGCCTTCTCGCCCGACTCTTCACACCTGGTTTCGGGGGCGTCCGATGGTACTTTAGGTCTTTGGGATTTCCGTACGAAAACATTGCACAGGACTGGGGCAGTGAATGACACCACTATGGTGGCCTGCTCCTTCACCCCCTGTGGCCAGATGTTTGTCACTGGATCTACGTATGGGGACCTCAGGCTGTGGGACCTGGACATGAACCAGCTCCATGCGGAGAAGAACACTCACGACTTGGGGGTCACCTGCTGCTGCTTTGGCCCCAAGATCCTCAGTGGTAGCGGTACGGTGCACTTCCGCCTGGCCTCCTGTGGACAAGACAGCACACTGAAGATATGGACCGTCTCCAGGTCCAACGCAGGCAGCTGTAAGATGCAGCTGCTGCACACCCTGACCGGCCAGTCTGCCCCGGTGCTCTCCTGTGCTTTCTCTGCGGACGGACAGCTGCTTGTGTCTGGCTCAGTGGACAAAACAGTCACAGTGTACGATGCTagCCAGGGGACTTTGCTCTACACATTGAACCAACACGAGAGGTACGTGACGGCGTGTGCCTTCTCTCCCAGCACACCTCTGTTCGCCACGGGTTCTATGGACAAGACTGTCAATATATGGAGAGTAGAGGATGGACACAGGGGCCATGGCAAATCTTTACCTGTTGAAACTGCAACATTCTCATGCGAAGGCAGAAAGTTGCTGTGTCACTCCAGGCTTCTGGTCAGTGATTGGTCAGAGGAGGACGTGGGGGCGTGGCTGTGTGAGGAGGGGCTGCAGGCGCTGGTGGAACACTTCAAGGCAAACAACATAGATGGAGCAGAGCTCATCAGTCTGACCAAGGAGACACTGGCCTCAGAACTCAACATAGAGTCTGTGGGATTGCGCAGTAAGGTCCTGAGgaaggtggaggagctgaaggCGGGGTGTTTGTGTACCGGTGTTCCTGATGAGTACCTCTGTCCAATCACCAGGGAGTTGATGAAGGACCCTGTTATTGCTGCAGATGGGTACTCCTATGAGAGGGAAGCGATTGAGAGCTGGATCGCAACCAAGAATCGTTCCAGCCCCATGACCAACCTGCCCTTACAGACAACACTTCTGACCCCAAACCGAACCCTGAAGATGGCTATTGGACGCTGGAGGACCAGCCAGTGAGAAAGAGGGCTGCATCGGCATCTTCTACATCCATTTCAATCTGAAGGCGGGTCTATCCCTCAGTTAACTTCTGACCAAAAGTAGGCTCATAGTACATAAAGCTAAATATGATGATGTTTTCAGGTTGACCATACTGAGCTTCGATTCAACCCCTCACTGTGTCTGTTGGGATGAAACTGCTTTAGAATGTAAATATTTATAGCCGATGAGAcattctaatatatatatatatatattctcaaaCTCATGCATGTTGACCATGTTGAACTCTGCTAtttactctactctctactctgctGCTTTAGCTCCAGAACCATTtcgatgtacagtgcattcggaac

Function

NR:

description
WD repeat, SAM and U-box domain-containing protein 1-like isoform X2

GO: NA

KEGG:

id description
K24764 WDSUB1; WD repeat, SAM and U-box domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571338.2 False 1849 mRNA 0.52 13 23652437 23660203
XM_036952297.1 False 1858 mRNA 0.52 13 23652437 23660989
XM_021571337.2 False 2116 mRNA 0.52 13 23652437 23661730
XM_021571340.2 False 2099 mRNA 0.52 12 23652437 23661731
XM_021571339.2 True 2115 mRNA 0.52 13 23652437 23661732

Neighbor

gene id symbol gene type direction distance location
trnat-ugu-38 NA coding downstream 10494 23641871 ~ 23641943 (-)
LOC110495852 LOC106574460 coding downstream 108806 23542411 ~ 23543631 (-)
LOC110495851 LOC106574449 coding downstream 110756 23479558 ~ 23541681 (-)
LOC110496920 LOC106574445 coding downstream 173872 23459836 ~ 23478565 (-)
LOC110495850 LOC106574444 coding downstream 289644 23338757 ~ 23362793 (-)
LOC110495859 LOC106574231 coding upstream 7422 23669154 ~ 23750347 (-)
LOC110495860 LOC106574232 coding upstream 119084 23780816 ~ 23821326 (-)
LOC110497101 LOC106574236 coding upstream 160096 23821828 ~ 23846147 (-)
LOC110495862 LOC106574237 coding upstream 184679 23846411 ~ 23866508 (-)
LOC110495863 LOC106574238 coding upstream 211937 23873669 ~ 23890422 (-)
G1529222 NA non-coding downstream 38431 23613605 ~ 23614006 (-)
G1529206 LOC106574228 non-coding downstream 61209 23591001 ~ 23591228 (-)
G1529156 NA non-coding downstream 65604 23501264 ~ 23586833 (-)
G1529193 NA non-coding downstream 82086 23565318 ~ 23570351 (-)
G1529099 NA non-coding downstream 247431 23404735 ~ 23405006 (-)
G1529250 NA non-coding upstream 879 23662611 ~ 23662833 (-)
G1529252 NA non-coding upstream 3100 23664832 ~ 23666137 (-)
G1529254 NA non-coding upstream 5321 23667053 ~ 23667325 (-)
G1529300 NA non-coding upstream 104203 23765935 ~ 23766465 (-)
G1529302 NA non-coding upstream 107314 23769046 ~ 23769345 (-)
LOC110495841 LOC106574435 other downstream 483846 23008547 ~ 23168591 (-)
G1528018 NA other downstream 766604 22872045 ~ 22885833 (-)
G1527230 NA other downstream 1389975 22262056 ~ 22262462 (-)
LOC110497104 LOC106574262 other upstream 618006 24279738 ~ 24371432 (-)
G1529613 NA other upstream 731643 24393375 ~ 24393684 (-)
G1530967 LOC106574270 other upstream 1488336 25150068 ~ 25150994 (-)
G1531142 NA other upstream 1857689 25519421 ~ 25523180 (-)
LOC110495915 NA other upstream 1911706 25571910 ~ 25574981 (-)

Expression


Co-expression Network