Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110495865 |
| gene name | LOC106574241 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048582.1 |
| NCBI id | CM023236.2 |
| chromosome length | 74657750 |
| location | 23911979 ~ 23918645 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: desmin-like |
| id | name | namespace |
|---|---|---|
| GO:0005882 | intermediate filament | cellular_component |
| GO:0005198 | structural molecule activity | molecular_function |
| id | description |
|---|---|
| K07610 | DES; desmin |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036952331.1 | True | 2130 | mRNA | 0.56 | 9 | 23911979 | 23918645 |
23,906,000
23,907,000
23,908,000
23,909,000
23,910,000
23,911,000
23,912,000
23,913,000
23,914,000
23,914,000
23,915,000
23,916,000
23,917,000
23,918,000
23,919,000
23,920,000
23,921,000
23,922,000
23,923,000
NC_048582.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110495861 | LOC106574235 | coding | upstream | 132347 | 23769548 ~ 23779632 (+) |
| LOC110495854 | LOC106574228 | coding | upstream | 260846 | 23587611 ~ 23651133 (+) |
| LOC110495855 | LOC106574229 | coding | upstream | 325132 | 23537127 ~ 23586847 (+) |
| LOC110495857 | LOC106575156 | coding | upstream | 341890 | 23565587 ~ 23570089 (+) |
| LOC110495853 | LOC106574225 | coding | upstream | 347283 | 23553850 ~ 23564696 (+) |
| LOC110495871 | sumo1 | coding | downstream | 75377 | 23994022 ~ 23997602 (+) |
| LOC110497102 | LOC106574246 | coding | downstream | 160088 | 24078733 ~ 24100642 (+) |
| LOC110495875 | LOC106575175 | coding | downstream | 192627 | 24111272 ~ 24122645 (+) |
| LOC118941123 | LOC106574249 | coding | downstream | 195645 | 24114290 ~ 24116592 (+) |
| LOC110495876 | LOC106575177 | coding | downstream | 204111 | 24122756 ~ 24134227 (+) |
| G1528654 | NA | non-coding | upstream | 719 | 23911004 ~ 23911260 (+) |
| G1528631 | NA | non-coding | upstream | 37929 | 23871020 ~ 23874050 (+) |
| G1528630 | NA | non-coding | upstream | 42135 | 23869559 ~ 23869844 (+) |
| G1528624 | LOC106574237 | non-coding | upstream | 56720 | 23854498 ~ 23855259 (+) |
| G1528620 | NA | non-coding | upstream | 64599 | 23846479 ~ 23847380 (+) |
| G1528683 | NA | non-coding | downstream | 56336 | 23974981 ~ 23979237 (+) |
| G1528717 | NA | non-coding | downstream | 87863 | 24006508 ~ 24006908 (+) |
| G1528723 | NA | non-coding | downstream | 106806 | 24025451 ~ 24025670 (+) |
| G1528724 | NA | non-coding | downstream | 107253 | 24025898 ~ 24026258 (+) |
| G1528729 | NA | non-coding | downstream | 114912 | 24033557 ~ 24033761 (+) |
| G1528194 | NA | other | upstream | 750688 | 23158833 ~ 23161291 (+) |
| LOC110497098 | LOC106574424 | other | upstream | 1300527 | 22599016 ~ 22641368 (+) |
| G1525320 | NA | other | upstream | 3154567 | 20756691 ~ 20757412 (+) |
| G1524181 | LOC106574559 | other | upstream | 3428266 | 20473360 ~ 20483713 (+) |
| G1524124 | LOC106574554 | other | upstream | 3605075 | 20305705 ~ 20306904 (+) |
| LOC110495887 | LOC108430494 | other | downstream | 602090 | 24520697 ~ 24525649 (+) |
| G1530367 | NA | other | downstream | 1086116 | 25004761 ~ 25005609 (+) |
| LOC110495895 | LOC106574270 | other | downstream | 1230338 | 25133210 ~ 25157338 (+) |
| G1530785 | NA | other | downstream | 1647826 | 25566471 ~ 25571346 (+) |
| G1530923 | LOC106574292 | other | downstream | 1919861 | 25838506 ~ 25840353 (+) |
