LOC110495873 (LOC106575174)


Basic Information

Item Value
gene id LOC110495873
gene name LOC106575174
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 24043236 ~ 24072359 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036952332.1
TAACCAATCAAGCGTTTCTCAAACTAAGTTAAGCAATGTACCATGGACCTACATACCAAACTTGGTGTTCTTTGGACATATGGTTCGTGAGAATATGTTTTTCAGGTTTTCCAAAATGTCCAAGATGGAGGAAAATCTATCCTAATGGACCTTACGGGTCCTTGAGGCAAGTTTGTTCAGCATGAGGAAAGACCCCTGTATTTCAAGTCTCGAGGTCAAACGGGTCGGCGAATATGAGGGTTTAAGTGCCATTCTTTTTGACCAAGTTACTCACGGCCTCTAGTTTCTGTGTGCCGAATTAggtgttgttttttttaaccaaTCTATGCTTGAGTTATTGGAATGAAGATGATCAAAAGTGTGGCTCACTTCTgcccacagcacacacacacattagtgaCTCCCTGAACACAATGTTCAAGCTCCAACCTTTCAAAACACACCAGCAGCCCCGGCTCTCTCCTCCACTGAGAGCTCATTGGGCAGTGCCTCCTATCTGACTCCGCTGATTGGCTATTGAATGTTGTCTACCAGGCAGCAGAGGAACTGTCAGCAggaggggacagggagaaagaagggaaagagagagagggaggatacagTGCAATattgtgagagggagagagcaaaacagagagagtaatagaggaaGCAAGAGCACCTTCAGGCAAAAGGAGGAAGAAGAAAAAGGGAAAGTAGGAAAATCCTGTCTGTGGTGCTAAAGCTGTTTACGTCCGAGGTTGCTGAAGACAAGGAGGGGCTGTGACTGAGATGAGAGCGCTGCTGTAGCTGGGTCCAGTTCTAAGGATGCCGGGGTGGAAGTGAGGTTCTATAGCGGTTCCACAGCAGTTCCACAGTACCACCAGGCAGGAACCAACGCTGGGATGCAGAACCTACGACAAGCAGCCACGGAGGCTTTCCATCGCCTGGGTCTGAAGCAAAGACAGCTGGGATATGAGGAGTTGGATGAGACAGACCCGTCCTACTCCAAGCCCCGGCCTCACTGGTTCCACACGATGCAGGTCGGCAGGCTGGCGGTCCAGAGAGGACGCAGCAACAGTGACCCTATGGGAGGGAAAAGTTTCGATCAGGACTTCCAATGGAAAACAGGCCTACAGTTTGGCACAGCTAACTCCTACCTGAACCTGGAGAAGATAGGGGAGGGGACATACGCTACAGTCTACAAGGGAATCAGCCGGATAAACGGGCACCTTGTGGCCTTGAAGGTGATCCGTATGAAGACGGAAGAAGGCGTACCATTCACTGCCATCCGAGAGGCCTCCCTCCTGAAAGGCCTGAAACACGCCAACATTGTCCTGCTCCATGACATCATCCACACCAAAGAGGCACTCACATTTGTCTTTGAGTACGTACAAACAGACTTGGCTGAGTATATGACGCAGCACCCAGGGGGCCTGCATTCCTACAATGTCAGGATCTTCATGTTCCAGCTGCTGCGGGGTCTGTCCTACATCCACGGTCGGAGGATCCTGCATCGGGACCTCAAACCCCAGAACTTGCTCATCAGCTACCTGGGGGAGCTCAAACTGGCCGACTTCGGGCTGGCCCGGTCCAAGTCCATCCCGTGCCAGACCTATTCGTCTGAGGTGGTGACTCTGTGGTACCGACCTCCTGATGTCCTCCTGGGTTCCACTGATTACTCCACTGCTCTGGACATCTGGGGAGCTGGATGCATCTTCATTGAGATGCTCCAGGGGACGCCAGCCTTTCCAGGGGTGGCAGACGTCTTTGAGCAGCTGCAGAACGTATGGACTGTCGTAGGGGTCCCGACTGAGGAGACGTGGCCAGGAGTGAACGAGCTGCCCAACTTCAAACCAGAGTGGTTTCAACCGTGTGAGCCCCAGCAATTCAGGAATGTTTGGAAAAGACTGTCCAAGTTGCCCTATAAGACGGAGGACCTGGCCCAGAAGATTCTGATCACCATCCCACGAGACCGCATCTCGGCCCAGGATGCACTGCAGCACCCCTATTTCAACACGCTACCGCCCCCCATCATGCAGCTAcgagacactgtatcaGTCTTCAAGGTCCCCGGAGTGAGGCTGGAGACAGAGGTGAAGGATATCTTCAGTCCCAGTCTAAGGATCAGACCGTCCCAGCTGGTGCCCTTGGCTAAGTGCTGGTGATAATGGACCCCTAAACCACTGGgcttgacccctgacccctagcccctaaccccagGCCCATAGCCCCAGGCCCCTAGCCCCAGGCCCCTAACCCCAGGCTCCTAGCCCCGCCTGCAGGCTAGACCCCCATCTGATCAAGATGGAGAGGCATGaggcgtctcacacacacacaacacttaaCTACACCACCAGCGTCCTCCACCAACCTCTGCTCTTGACTCCACCCAGCATTCCTCAGTCACAGTTCCCATGTTGtaagaagacaggagagaagagggaggtttTGAATGGTACCTGGTATATCACATATTAGATGATGTCAGAAGTACGgtatgcactgtatatactctCTATCTGAGACCCGGTGTCTGTTGTTGGTGGCAACGGAAAGCTAGGCAATGTCTAAGAGAACTGACAGGAAGCTCAGAACTCCTTAACATCTTCCTTCTGCGGAACCACCTCCTCCTGCGTCCTCCCTCTCCTTATCAGAGCGTCTCCCTGGACTCACTatgctctctctgcctccttctaAATCTACACTGAGATTCAATGATGACTATGGGTTTGTTTTGCAGATGAGCGTTTTATTTTGTACTGCCAAAACATGCATATATTATATACCTCTTATATTAATCAGGTCCTTGTGAACCATGATTGTTCTTTTGCACAGCATGTGGGTGGGTATCCCTGCAACAGAACGACTGTGACGGTTGTGTGTACACTGTAACTCAAGACGTATTGTACCGTGAAACTTCCTCCTCAACACCCCACGCTATGTATTTTTCGGCAATCTTGTGATGTCCACTCTTCAATTGTCCTACACTTGGGTGCAGCTTTGcctttaaaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttcgtgaGAATGAGTGAAGGAGTGTGTGAGTCAATAAATGTTGCAGTAATGA
>TU1751048
CAGTTCAATCTCCACGGTTCACTATTAATTCATCATGGACCATCGGAGCTGTCCAAAGCACCGGCTAATCAACCCGTTAAAACACTCTCATTAAAACTCTACGCCAGGGCCCAGAAACCACAAATTGCGATCAGTAGTGCCAAAGCATGTTTCACTTAGTCTCGCCGCCAGGATACCCTAGCTGTAGCATTAATCATCAAAGAGAACAAGGCCTACTTTACTGGAAGTTTACACAGatattctttgttgttgttgttgttgtgtcctgTGGGCTGACCACCTCCCTGTTCCATCGTGCGTGCCTTTGCAGCCATAGTTGCAGGCCAAACATTTCCTAACTAACCTGCTCGTGCTGCTCTCCTCTTCCTACAGAGTGGTTTCAACCGTGTGAGCCCCAGCAATTCAGGAATGTTTGGAAAAGGTACGGTGAAATCAGtttgctcagtgttctgtcagtaCTATGAGTTTGGGAATGTGTTTAACATGTCTTGCAGATGTGTTTAACTCGTGCAGGTTCGTCTAATG
>TU1751045
agggagaaagaagggaaagagagagagggaggatacagTGCAATattgtgagagggagagagcaaaacagagagagtaatagaggaaGCAAGAGCACCTTCAGGCAAAAGGAGGAAGAAGAAAAAGGGAAAGTAGGAAAATCCTGTCTGTGGTGCTAAAGCTGTTTACGTCCGAGGTTGCTGAAGACAAGGAGGGGCTGTGACTGAGATGAGAGCGCTGCTGTAGCTGGGTCCAGTTCTAAGGATGCCGGGGTGGAAGTGAGGTTCTATAGCGGTTCCACAGCAGTTCCACAGTACCACCAGGCAGGAACCAACGCTGGGATGCAGAACCTACGACAAGCAGCCACGGAGGCTTTCCATCGCCTGGCAAAGACAGCTGGGATATGAGGAGGTAAGATACCCTATGTTATTGTCTGTGACTGAAACACTTACGAAATACTATTTTTAAGGGTCAGATTCGACTATGTATCACAAGAGTTTTAGACAGTTAGACGTACtttgttgttccctctctctggttctctctggcGTCCTCCGTCCCTCCTGGGAAGAGAGAAGATGAACAGAATAGTCAACACTGCCCCCTGCTGAGAAGAGtgggtggaggagatggaggg

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004693 cyclin-dependent protein serine/threonine kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036952332.1 False 3083 mRNA 0.51 13 24043236 24072359
TU1751048 False 525 lncRNA 0.46 1 24047328 24047852
TU1751045 True 616 lncRNA 0.50 2 24061739 24071795

Neighbor

gene id symbol gene type direction distance location
LOC110495872 LOC106574245 coding downstream 40311 23999571 ~ 24002925 (-)
LOC110495870 LOC106574243 coding downstream 52334 23974941 ~ 23990902 (-)
LOC110495869 LOC106575170 coding downstream 71922 23948724 ~ 23971314 (-)
LOC110495867 LOC106574242 coding downstream 95165 23918728 ~ 23948071 (-)
LOC110495863 LOC106574238 coding downstream 152814 23873669 ~ 23890422 (-)
LOC110495882 LOC106574255 coding upstream 95221 24167580 ~ 24175983 (-)
LOC110495883 LOC106575186 coding upstream 134985 24207344 ~ 24209455 (-)
LOC118941245 NA coding upstream 153911 24226270 ~ 24226399 (-)
LOC110497104 LOC106574262 coding upstream 207788 24279738 ~ 24371432 (-)
LOC110495886 LOC106575190 coding upstream 380871 24453230 ~ 24465553 (-)
G1529321 NA non-coding downstream 125470 23915845 ~ 23917766 (-)
G1529322 LOC106574241 non-coding downstream 127464 23912833 ~ 23915772 (-)
G1529317 NA non-coding downstream 130448 23911852 ~ 23912788 (-)
G1529372 NA non-coding downstream 131540 23911330 ~ 23911696 (-)
G1529430 NA non-coding upstream 3042 24075401 ~ 24075749 (-)
G1529437 NA non-coding upstream 9808 24082167 ~ 24082400 (-)
G1529438 NA non-coding upstream 13844 24086203 ~ 24086469 (-)
G1529449 NA non-coding upstream 32767 24105126 ~ 24108097 (-)
G1529451 NA non-coding upstream 37004 24109363 ~ 24109603 (-)
LOC110495852 LOC106574460 other downstream 499743 23542411 ~ 23543631 (-)
LOC110495851 LOC106574449 other downstream 501980 23479558 ~ 23541681 (-)
LOC110495841 LOC106574435 other downstream 874645 23008547 ~ 23168591 (-)
G1528018 NA other downstream 1157403 22872045 ~ 22885833 (-)
G1527230 NA other downstream 1780774 22262056 ~ 22262462 (-)
G1529613 NA other upstream 321016 24393375 ~ 24393684 (-)
G1530967 LOC106574270 other upstream 1077709 25150068 ~ 25150994 (-)
G1531142 NA other upstream 1447062 25519421 ~ 25523180 (-)
LOC110495915 NA other upstream 1501079 25571910 ~ 25574981 (-)

Expression


Co-expression Network