LOC110495876 (LOC106575177)


Basic Information

Item Value
gene id LOC110495876
gene name LOC106575177
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 24122756 ~ 24134227 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571379.2
TTTTCTCAGCTAAAAATCACTGTAATGGCAAGGCAACGAGTGTAAACAAAGTGGTCGGGTAAACACCGTGGCTACCAACATGCGGACGTTACAAGCCCAAAACGTTTTAACagctaggtagctaactagctatctcTTATCGGGGTTGTTTTAATAGGGTATCCCGCAGAAATGGACACAGGAGGATTCCAGGAACAAAGTTTGCGACGGAGGGACCTTCCGCCTCTTCCACAGCGTGGACAGCGTGCCCTGCCCCCCATGTCAAGTCAAGATACAGGTGACGAGATGCCGGTCCCTAAAAGCAAGAGGAAGAAGTCGAAGAGTCAGGTGGATGGTGTTGAAAGCCCAGAGGCAGACTCAGGGATGGAGATGGCCCAGGTGGGGGGTCTGAGCAGTCGTAGGTCATCTGAGGTCATCCAGGCCTTGACCCCCGATTCGCCGGAAGCTGCATCAcagagaaggaagaagaagaaaaaggcaGCGACCGTAGACATGGAGGATGACCAGGCTGACCTGGTGAATGGTGATGGACTGGTCCAGAACACAGCAGAGGCAGGGGAAGAAGTGACCAAAAAACCCAAGAGGAAGAAGAAGTCGAAAGTGTCAGAGACACAGTACGTCAACGAGCTTCATGTAGAGGACGATGACATCATCACAGACGCTCAGCCACCCGTCCCCCGGCATTCCCTGTTCTCTGCTCCCCTGGGACAGAGCCAGCCTGTGGGGAAGGTGTTTGTAGAGAGGAGCAAGAGATTTCAAGCGGCCGATCGGTCAGACAGACTGAAGTCCAGCGATCAGGTGGACAACTTCGTGGACATCCAGCAGATGTGGACCACCAAGGATGTGTCTGTTAGGGTACATGGTGGCTTCAGGGGGGTTGGGCTGTTCTGCCACGGCTTCCTAGCGGGCTATGCAGTGTGGAACATCATAGTGATCTATGCCCTGGCAGGAAAACATCTCACTACTCTGCCTAACCTACTGCAGCAGTACCACAGCCTGGCCTACCCTGCACAGTCTCTCTTCTACCTGCTACTGGCTATAAGCACCGTGTCAGCCTTTGACAgGGTGAATCTGGCCAAAGGCGCCATGGCTATGAGAGAGTTTGTCACCCTGGACCCAGTTGCTCTAGCCTCTTTTTTGTACTTCTCAGctctggtcctctctctcagCCAGCAGATGACCAGTGACCGCATCAACCTGTACCCCAGTGCTAACGAGACCTTATGgcCTCCTGGGTCAGAGCAACAGATCCTGAACCCGTGGATCATAGTGAACCTGGTGGTGGCTGTGCTGGTAGGAATGGCCTGGATCTTTATCTCCACTAGGCCTGAGATGGACTACACCGAAGGATTCCTAATGGCTATGGAGATCGAGTCCTTGAGACCAGAGGAGAAATCAGAAATGTCTACTTGAGGAATTGTATTTCCATTTTTTTCTTGCACATCTTTTTTTGTGCTGTATTTTATCAGCCAACACAAAATGTACACCTTGTTTGTGGTAATAAGCAGTTTATTTTTGTATGACCCAAATGTGTGCTTGTTTTGTCAAGTGTATTGATTACCATTGGAAATAATAAAAATGTTATCCCACTGA
>XM_021571380.2
TTTTCTCAGCTAAAAATCACTGTAATGGCAAGGCAACGAGTGTAAACAAAGTGGTCGGGTAAACACCGTGGCTACCAACATGCGGACGTTACAAGCCCAAAACGTTTTAACagctaggtagctaactagctatctcTTATCGGGGTTGTTTTAATAGGGTATCCCGCAGAAATGGACACAGGAGGATTCCAGGAACAAAGTTTGCGACGGAGGGACCTTCCGCCTCTTCCACAGCGTGGACAGCGTGCCCTGCCCCCCATGTCAAGTCAAGATACAGGTGACGAGATGCCGGTCCCTAAAAGCAAGAGGAAGAAGTCGAAGAGTCAGGTGGATGGTGTTGAAAGCCCAGAGGACTCAGGGATGGAGATGGCCCAGGTGGGGGGTCTGAGCAGTCGTAGGTCATCTGAGGTCATCCAGGCCTTGACCCCCGATTCGCCGGAAGCTGCATCAcagagaaggaagaagaagaaaaaggcaGCGACCGTAGACATGGAGGATGACCAGGCTGACCTGGTGAATGGTGATGGACTGGTCCAGAACACAGCAGAGGCAGGGGAAGAAGTGACCAAAAAACCCAAGAGGAAGAAGAAGTCGAAAGTGTCAGAGACACAGTACGTCAACGAGCTTCATGTAGAGGACGATGACATCATCACAGACGCTCAGCCACCCGTCCCCCGGCATTCCCTGTTCTCTGCTCCCCTGGGACAGAGCCAGCCTGTGGGGAAGGTGTTTGTAGAGAGGAGCAAGAGATTTCAAGCGGCCGATCGGTCAGACAGACTGAAGTCCAGCGATCAGGTGGACAACTTCGTGGACATCCAGCAGATGTGGACCACCAAGGATGTGTCTGTTAGGGTACATGGTGGCTTCAGGGGGGTTGGGCTGTTCTGCCACGGCTTCCTAGCGGGCTATGCAGTGTGGAACATCATAGTGATCTATGCCCTGGCAGGAAAACATCTCACTACTCTGCCTAACCTACTGCAGCAGTACCACAGCCTGGCCTACCCTGCACAGTCTCTCTTCTACCTGCTACTGGCTATAAGCACCGTGTCAGCCTTTGACAgGGTGAATCTGGCCAAAGGCGCCATGGCTATGAGAGAGTTTGTCACCCTGGACCCAGTTGCTCTAGCCTCTTTTTTGTACTTCTCAGctctggtcctctctctcagCCAGCAGATGACCAGTGACCGCATCAACCTGTACCCCAGTGCTAACGAGACCTTATGgcCTCCTGGGTCAGAGCAACAGATCCTGAACCCGTGGATCATAGTGAACCTGGTGGTGGCTGTGCTGGTAGGAATGGCCTGGATCTTTATCTCCACTAGGCCTGAGATGGACTACACCGAAGGATTCCTAATGGCTATGGAGATCGAGTCCTTGAGACCAGAGGAGAAATCAGAAATGTCTACTTGAGGAATTGTATTTCCATTTTTTTCTTGCACATCTTTTTTTGTGCTGTATTTTATCAGCCAACACAAAATGTACACCTTGTTTGTGGTAATAAGCAGTTTATTTTTGTATGACCCAAATGTGTGCTTGTTTTGTCAAGTGTATTGATTACCATTGGAAATAATAAAAATGTTATCCCACTGA
>XM_036952350.1
CACAAGCCGAGTCAAAAGACTGCTCTCAGACAGCCAGTTCCAATAGGTCTCTGGTTTCTGCACCCTGCAGAGGGCCCAACAACAACAAATCAGAGAGGGTGTAACAGGGACCTTGCTGCAGAACCATACAGCATTAGGGGTTAAGGTCAACAACCCCATGAAGAGGTGTAGTTTATGTCACTTCAAAACTGTGGCCCAATATGAGAGGGAAATGAAATACGGCCTTAATAATCAACATTGTTCTTACACCAAATTATTGCATCAATAAAGGTGTTGTAGTTTACTCTAGGCTATTTTTTGAGGGTCTTCTTCACTTTCACCTCAAGGGGTCAAATCCCTCAAGTCTGAATAGTCTGATCTGATCTATGCCTGGATTGGTTGGTATTCCAGTTCCTTGGCAGATGCATACTGCAGATTTAGCCCAGGATTAGGCAGTGCCACCAAGGCTGTGGCACAGGAATATCCTCAGAGCCCTTTCTGATTCTTGGGTGGAATGGTGAGAAAACAAATCACGCGTGGACAGCGTGCCCTGCCCCCCATGTCAAGTCAAGATACAGGTGACGAGATGCCGGTCCCTAAAAGCAAGAGGAAGAAGTCGAAGAGTCAGGTGGATGGTGTTGAAAGCCCAGAGGACTCAGGGATGGAGATGGCCCAGGTGGGGGGTCTGAGCAGTCGTAGGTCATCTGAGGTCATCCAGGCCTTGACCCCCGATTCGCCGGAAGCTGCATCAcagagaaggaagaagaagaaaaaggcaGCGACCGTAGACATGGAGGATGACCAGGCTGACCTGGTGAATGGTGATGGACTGGTCCAGAACACAGCAGAGGCAGGGGAAGAAGTGACCAAAAAACCCAAGAGGAAGAAGAAGTCGAAAGTGTCAGAGACACAGTACGTCAACGAGCTTCATGTAGAGGACGATGACATCATCACAGACGCTCAGCCACCCGTCCCCCGGCATTCCCTGTTCTCTGCTCCCCTGGGACAGAGCCAGCCTGTGGGGAAGGTGTTTGTAGAGAGGAGCAAGAGATTTCAAGCGGCCGATCGGTCAGACAGACTGAAGTCCAGCGATCAGGTGGACAACTTCGTGGACATCCAGCAGATGTGGACCACCAAGGATGTGTCTGTTAGGGTACATGGTGGCTTCAGGGGGGTTGGGCTGTTCTGCCACGGCTTCCTAGCGGGCTATGCAGTGTGGAACATCATAGTGATCTATGCCCTGGCAGGAAAACATCTCACTACTCTGCCTAACCTACTGCAGCAGTACCACAGCCTGGCCTACCCTGCACAGTCTCTCTTCTACCTGCTACTGGCTATAAGCACCGTGTCAGCCTTTGACAgGGTGAATCTGGCCAAAGGCGCCATGGCTATGAGAGAGTTTGTCACCCTGGACCCAGTTGCTCTAGCCTCTTTTTTGTACTTCTCAGctctggtcctctctctcagCCAGCAGATGACCAGTGACCGCATCAACCTGTACCCCAGTGCTAACGAGACCTTATGgcCTCCTGGGTCAGAGCAACAGATCCTGAACCCGTGGATCATAGTGAACCTGGTGGTGGCTGTGCTGGTAGGAATGGCCTGGATCTTTATCTCCACTAGGCCTGAGATGGACTACACCGAAGGATTCCTAATGGCTATGGAGATCGAGTCCTTGAGACCAGAGGAGAAATCAGAAATGTCTACTTGAGGAATTGTATTTCCATTTTTTTCTTGCACATCTTTTTTTGTGCTGTATTTTATCAGCCAACACAAAATGTACACCTTGTTTGTGGTAATAAGCAGTTTATTTTTGTATGACCCAAATGTGTGCTTGTTTTGTCAAGTGTATTGATTACCATTGGAAATAATAAAAATGTTATCCCACTGA
>XM_036952349.1
CCGAGTCAAAAGACTGCTCTCAGACAGCCAGTTCCAATAGGTCTCTGGTTTCTGCACCCTGCAGAGGGCCCAACAACAACAAATCAGAGAGGGTGTAACAGGGACCTTGCTGCAGAACCATACAGCATTAGGGGTTAAGGTCAACAACCCCATGAAGAGGTGTAGTTTATGTCACTTCAAAACTGTGGCCCAATATGAGAGGGAAATGAAATACGGCCTTAATAATCAACATTGTTCTTACACCAAATTATTGCATCAATAAAGGTGTTGTAGTTTACTCTAGGCTATTTTTTGAGGGTCTTCTTCACTTTCACCTCAAGGGGTCAAATCCCTCAAGTCTGAATAGTCTGATCTGATCTATGCCTGGATTGGTTGGTATTCCAGTTCCTTGGCAGATGCATACTGCAGATTTAGCCCAGGATTAGGCAGTGCCACCAAGGCTGTGGCACAGGAATATCCTCAGAGCCCTTTCTGATTCTTGGGTGGAATGGTGAGAAAACAAATCACGCGTGGACAGCGTGCCCTGCCCCCCATGTCAAGTCAAGATACAGGTGACGAGATGCCGGTCCCTAAAAGCAAGAGGAAGAAGTCGAAGAGTCAGGTGGATGGTGTTGAAAGCCCAGAGGCAGACTCAGGGATGGAGATGGCCCAGGTGGGGGGTCTGAGCAGTCGTAGGTCATCTGAGGTCATCCAGGCCTTGACCCCCGATTCGCCGGAAGCTGCATCAcagagaaggaagaagaagaaaaaggcaGCGACCGTAGACATGGAGGATGACCAGGCTGACCTGGTGAATGGTGATGGACTGGTCCAGAACACAGCAGAGGCAGGGGAAGAAGTGACCAAAAAACCCAAGAGGAAGAAGAAGTCGAAAGTGTCAGAGACACAGTACGTCAACGAGCTTCATGTAGAGGACGATGACATCATCACAGACGCTCAGCCACCCGTCCCCCGGCATTCCCTGTTCTCTGCTCCCCTGGGACAGAGCCAGCCTGTGGGGAAGGTGTTTGTAGAGAGGAGCAAGAGATTTCAAGCGGCCGATCGGTCAGACAGACTGAAGTCCAGCGATCAGGTGGACAACTTCGTGGACATCCAGCAGATGTGGACCACCAAGGATGTGTCTGTTAGGGTACATGGTGGCTTCAGGGGGGTTGGGCTGTTCTGCCACGGCTTCCTAGCGGGCTATGCAGTGTGGAACATCATAGTGATCTATGCCCTGGCAGGAAAACATCTCACTACTCTGCCTAACCTACTGCAGCAGTACCACAGCCTGGCCTACCCTGCACAGTCTCTCTTCTACCTGCTACTGGCTATAAGCACCGTGTCAGCCTTTGACAgGGTGAATCTGGCCAAAGGCGCCATGGCTATGAGAGAGTTTGTCACCCTGGACCCAGTTGCTCTAGCCTCTTTTTTGTACTTCTCAGctctggtcctctctctcagCCAGCAGATGACCAGTGACCGCATCAACCTGTACCCCAGTGCTAACGAGACCTTATGgcCTCCTGGGTCAGAGCAACAGATCCTGAACCCGTGGATCATAGTGAACCTGGTGGTGGCTGTGCTGGTAGGAATGGCCTGGATCTTTATCTCCACTAGGCCTGAGATGGACTACACCGAAGGATTCCTAATGGCTATGGAGATCGAGTCCTTGAGACCAGAGGAGAAATCAGAAATGTCTACTTGAGGAATTGTATTTCCATTTTTTTCTTGCACATCTTTTTTTGTGCTGTATTTTATCAGCCAACACAAAATGTACACCTTGTTTGTGGTAATAAGCAGTTTATTTTTGTATGACCCAAATGTGTGCTTGTTTTGTCAAGTGTATTGATTACCATTGGAAATAATAAAAATGTTATCCCACTGA

Function

NR:

description
transmembrane protein 237B-like isoform X4

GO: NA

KEGG:

id description
K22765 TMEM237; transmembrane protein 237

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571379.2 False 1593 mRNA 0.51 14 24122756 24134227
XM_021571380.2 False 1590 mRNA 0.51 14 24122756 24134227
XM_036952350.1 False 1870 mRNA 0.49 13 24123304 24134227
XM_036952349.1 True 1867 mRNA 0.49 13 24123310 24134227

Neighbor

gene id symbol gene type direction distance location
LOC110495875 LOC106575175 coding upstream 111 24111272 ~ 24122645 (+)
LOC118941123 LOC106574249 coding upstream 6164 24114290 ~ 24116592 (+)
LOC110497102 LOC106574246 coding upstream 22114 24078733 ~ 24100642 (+)
LOC110495871 sumo1 coding upstream 125154 23994022 ~ 23997602 (+)
LOC110495865 LOC106574241 coding upstream 204111 23911979 ~ 23918645 (+)
LOC110495879 LOC106574251 coding downstream 13774 24148001 ~ 24153085 (+)
LOC110495878 LOC106574254 coding downstream 19018 24153245 ~ 24167595 (+)
shroom2b NA coding downstream 42084 24176311 ~ 24199430 (+)
LOC110497103 LOC106574257 coding downstream 65347 24199574 ~ 24201614 (+)
LOC100653456 LOC106574258 coding downstream 76758 24210985 ~ 24221099 (+)
G1528760 NA non-coding upstream 14981 24106210 ~ 24107775 (+)
G1528762 NA non-coding upstream 18920 24103507 ~ 24103836 (+)
G1528763 NA non-coding upstream 35681 24086854 ~ 24087075 (+)
G1528755 NA non-coding upstream 48743 24073803 ~ 24074013 (+)
G1528754 NA non-coding upstream 49643 24072718 ~ 24073113 (+)
G1528779 NA non-coding downstream 131295 24265522 ~ 24265839 (+)
G1528789 NA non-coding downstream 144675 24278902 ~ 24279115 (+)
G1528791 NA non-coding downstream 145627 24279854 ~ 24280075 (+)
G1528792 NA non-coding downstream 147134 24281361 ~ 24281731 (+)
G1528794 LOC106574262 non-coding downstream 152413 24286640 ~ 24286937 (+)
G1528194 NA other upstream 961465 23158833 ~ 23161291 (+)
LOC110497098 LOC106574424 other upstream 1511304 22599016 ~ 22641368 (+)
G1525320 NA other upstream 3365344 20756691 ~ 20757412 (+)
G1524181 LOC106574559 other upstream 3639043 20473360 ~ 20483713 (+)
G1524124 LOC106574554 other upstream 3815852 20305705 ~ 20306904 (+)
LOC110495887 LOC108430494 other downstream 386508 24520697 ~ 24525649 (+)
G1530367 NA other downstream 870534 25004761 ~ 25005609 (+)
LOC110495895 LOC106574270 other downstream 1014756 25133210 ~ 25157338 (+)
G1530785 NA other downstream 1432244 25566471 ~ 25571346 (+)
G1530923 LOC106574292 other downstream 1704279 25838506 ~ 25840353 (+)

Expression


Co-expression Network