LOC110495879 (LOC106574251)


Basic Information

Item Value
gene id LOC110495879
gene name LOC106574251
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 24148001 ~ 24153085 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571383.2
TGCTATGCCAGATCAAGTAGTTTGTAACATTTTGTAGTTAGATTGTATCTGCTTCTGTACATTCTGATTTATCCATGCGCTCTGAGATGCATTGCTCTGGCCTCACTGACTGTGTGCAGGCTTTGCAGTAGAACACGGAGTTATGATGCTACCGTAGACGTGGTAGCGATACCGAATGTATAGTATCGTAGCTACCTGTCTAAACGTTTTTTTTTAGTAACACCAGCAAACATGCTGGACTTTGCGATATTTGCAGTGACTTTTGTCATCATTCTGGTCGGCGCAGTCCTCTATTTGTATCCATCATCAAGAAGTGCTTCTGGTATACCAGGTCTCAACCCTACCGAAGAGAAGGATGGAAATCTGCAAGACATAGTGAACCGAGGCAGTCTGCATGAGTTCCTGGCTAGTCTACATGGACAGTTTGGTCCCGTGGCATCCTTCTGGTTTGGAGGACGCCCTGTGGTCAGCTTGGGTTCAGTGGACCAGCTACGGCAGCACATCAACCCCAACAGGACTACGGACTCATTTGAGACAATGCTGAAGTCGTTGCTAGGTTACCAGTCAGGAACGGGTGGAGGGGCCACAGAGGCTGTAATGAGGAAGAAGTTGTATGAGAGTGCCGTCAACAACACCCTGGAGAAAAACTTTCCAATGCTGCTGAAGCTGGTGGAGGAGTTAGTGGGGAAGTGGCAGTCTTTCCCTAAGGACCAGCACACACCCCTCTGTGCCCATCTGCTAGGATTGGCCATGAAGGCTGTCACTCAACTCGCTCTGGGTGACCGTTTCCGGAATGATGCTGAAGTCATCGGCTTCCGAAAGAACCATGAGGCAATCTGGTCGGAGATCGGAAAAGGCTATTTGGACGGTTCCATGGAGAAGAGCTCCATCAGAAAGGAGCACTATGAGAGCGCACTGGCAGAGATGGAAACAGTGCTGATGTCTGTGGCTAAAGACAGGAAAGGACAAAGGAGCCAGACAGCGTTTGTAGACACTCTTCTCCAGTCCAACCTCACAGAGAGACAGGTGATGGAGGACAGCATGGTATTCACACTGGCAGGTTGTGTCATCACAGCTAATTTGTGCATCTGGGCAGTACACTTCCTGTCCACATCAGAGGAAGTTCAGGAGAAGCTGCATCAGGAGCTGGAGGATGTTCTGGGCTCTGAGCCTGTTTCTCTGGATAAGATCCCACAGCTCAGGTATTTTCAGCAGGTTTTGAACGAGACTGTACGGACAGCCAAACTGACGCCCATCGCAGCCCGGCTCCAGGAAAATGAAGGGAAAGTCGATCAGCACATTATTCCTAAAGAGacaCTGGTGATCTATGCCCTTGGGGTAGTCCTACAGGATGCAGACACCTGGAGCCGTCCCTACAAGTTTGACCCTGACCGATTCACAGAAGATTCAGCCAGGAAAAGCTTCTCTCTGCTTGGATTCTCAGGGAACCAGGCCTGTCCTGAGCTGAGgtttgCGTACACAGTGGCCACTGTCGTCCTCAGCACTGTAGTGCGCCAACTGAAGCTGCATCAGGTGAAGGGACAGGTGGTAGAGGCCAGATCTGAGCTTGTGTCCACACCTAAAGATGACACATGGATCACTGTGAGCAGAAGAAGCTAACTAACAGTGGACATTTGTCTCAAACTCCATCTGTGGAAGAGGGACTGTGTTAATTGGGAAGGTACTTGTCAGTTAGCTTAGATTCTAGACCGAGTGGAACTGTTTAAAAAGCTGTAAACATGAGCTTAGTAGGGCTACTTGTCAGTCAGCTCTTGAACATGGTTTTGATTAGCTAAAGTCATTGCCAATGGTGACTCGGTTATTTGAGCTACCACCTGAAGTAGCTTTTTGTCCCCCCCATTTCAATATGAGGATCAGTAGCTATCTTTTAAAGCTACATGATAATTTATGTATTGTCTTAAACCTTGCCTTAAACCAAATGCTGCACAAGTGATGGCTATTTTATCTCCACTCTTGGACCCCCCACAACATTCCAGCTGAACTGCCTTCCAAAACACGTGGTCCCAACTCCCCCAGATGCATGACATTTTAGACAGTTCATTTTTTAATAAAGTTTACACTAATCGTGTGTTAGGATAGGAATATAATATTTTGCACATTTGTTGCAGCCCCTCTGTTGTGAGCATATCCTGCCACTGTCAAGACGTCTAGGCTGTTATTGTCAAAAAGTGCTCACTTTGTATCTGCAGTGTCTCTGATTCAATTCCCAGCCCTGTTTCCACTGTATCGCTACATTAGCTTTAAtagtttaaaataaaaataatattcgTAA

Function

NR:

description
cytochrome P450 20A1

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0005506 iron ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K07435 CYP20A; cytochrome P450 family 20 subfamily A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571383.2 True 2293 mRNA 0.47 13 24148001 24153085

Neighbor

gene id symbol gene type direction distance location
LOC110495876 LOC106575177 coding upstream 13774 24122756 ~ 24134227 (+)
LOC110495875 LOC106575175 coding upstream 25356 24111272 ~ 24122645 (+)
LOC118941123 LOC106574249 coding upstream 31409 24114290 ~ 24116592 (+)
LOC110497102 LOC106574246 coding upstream 47359 24078733 ~ 24100642 (+)
LOC110495871 sumo1 coding upstream 150399 23994022 ~ 23997602 (+)
LOC110495878 LOC106574254 coding downstream 160 24153245 ~ 24167595 (+)
shroom2b NA coding downstream 23226 24176311 ~ 24199430 (+)
LOC110497103 LOC106574257 coding downstream 46489 24199574 ~ 24201614 (+)
LOC100653456 LOC106574258 coding downstream 57900 24210985 ~ 24221099 (+)
LOC110495884 LOC106574260 coding downstream 69744 24222829 ~ 24263106 (+)
G1528766 NA non-coding upstream 17322 24129929 ~ 24130679 (+)
G1528760 NA non-coding upstream 40226 24106210 ~ 24107775 (+)
G1528762 NA non-coding upstream 44165 24103507 ~ 24103836 (+)
G1528763 NA non-coding upstream 60926 24086854 ~ 24087075 (+)
G1528755 NA non-coding upstream 73988 24073803 ~ 24074013 (+)
G1528779 NA non-coding downstream 112437 24265522 ~ 24265839 (+)
G1528789 NA non-coding downstream 125817 24278902 ~ 24279115 (+)
G1528791 NA non-coding downstream 126769 24279854 ~ 24280075 (+)
G1528792 NA non-coding downstream 128276 24281361 ~ 24281731 (+)
G1528794 LOC106574262 non-coding downstream 133555 24286640 ~ 24286937 (+)
G1528194 NA other upstream 986710 23158833 ~ 23161291 (+)
LOC110497098 LOC106574424 other upstream 1536549 22599016 ~ 22641368 (+)
G1525320 NA other upstream 3390589 20756691 ~ 20757412 (+)
G1524181 LOC106574559 other upstream 3664288 20473360 ~ 20483713 (+)
G1524124 LOC106574554 other upstream 3841097 20305705 ~ 20306904 (+)
LOC110495887 LOC108430494 other downstream 367650 24520697 ~ 24525649 (+)
G1530367 NA other downstream 851676 25004761 ~ 25005609 (+)
LOC110495895 LOC106574270 other downstream 995898 25133210 ~ 25157338 (+)
G1530785 NA other downstream 1413386 25566471 ~ 25571346 (+)
G1530923 LOC106574292 other downstream 1685421 25838506 ~ 25840353 (+)

Expression


Co-expression Network