LOC110495883 (LOC106575186)


Basic Information

Item Value
gene id LOC110495883
gene name LOC106575186
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 24207344 ~ 24209455 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571394.2
acCACTGAGTATAGCAGCCTCCAAGGGGAGGGCAACATGTCATCAAGCCGCTGCTTTCCTCCTCTCAACTGCAGATGATGCGTGCATGTGAGTGAGCTACTGATCGTTTGAAGAAGTTACTCCCTCCCAGCCCATGCTGGTAGTAGTAAACCCTAATTGGGTGTACGGTCTTTTGAACAAATTGAGCCTCGATCGGAACCTACTGGCCGTGGCTTCCTCTCGCTTCAACTGGCTGCAGTTCAgaaggacaggaacagagagaagcAGTCAGGAGTCCTGGCTGCAGTTGACtgtggcacagagagacagggagagcagGCATCTCGGGAGCCAGAGAGTGGCCACTCAGAGTGGGCAGCACTATGGATCCGGGGGTGTGCGCTATGGAACTCCTCGGGGTCTTCTTCTCTATTGGTGCCTGGAtctgctcgctggtcaccaccaccatgtccacCTGGCTGACCCTGTCCACCGACCTGCTGCCCGCGGAGAGCTACGAGCTGGGCCTGTGGGAGACATGTGTGGTGCAGGACCTTGGAATTCTGGAGTGCAGACCCTATGACAGTCTCCTCGGCCTGCCTCCGGACATCAAACTAGCCCGGATCCTCATGTGTGTAACAGTGGCCACGGGCCTCCTGGGTCTCCTGCTAGCCATTCCTGGAATCTACTGGATCAACAGCTGCAACCAGGGGCCTGAGGGTTTGAGGGTGAAGAGATTGATGAAGATGCTGGGGGGGATATTGTGCTTGGTCGCAGGGATACTGGGTCTCATACCCGTGTCTTACATCGCTCACCTGACGGTCATGCGGTTCTTTGATGAGGCCGTGCCGGCAATCGTGCCACGCTGGGAGTTTGGGGATGCCCTGTTCTGTGGCTGGACGGCGGGGTTTCTACACCTGGTGGCTGGCTCTCTGCTGGTCACCTCCTGCGTGTGCCTTCAAGAGGAGCCCTGCACCTTACAAATGCCTATACCACTACAGAGAagacatacacacgtacacagtACCAATACCCCACATAGGAAGAGGTCCATGGAATATGTTTGATGAGCTATTGAAAAGTGAGAACAGTATTCTCAGTAGCCTCTGCCCTTTCTCTATCGATGGTGAATAAAACACTGCTTATCTAAAGCTTTTTCATGCTTATTTACATTAGCTATAGTTAGTTATTGAGTACTTTTGCTGGGACAAATCTTTCTTCATATTCTGAGACAGAATTTGCACACAATGGTGGTATTTATTTCAATCACTCAAACAGGGTTTGGTGCATGCCATGTTTGCAAAAATATCACCTACATTTATCAAACAGAAATTCTTGATGGAACCAAAGAGACTAAAGCTTTTAAAGCTGCCATTTCTTCCTTGGTACTGTGTAAGAGATAGAGTGCAATGGTGCCAGAGAATTTGATGACAAGCAGTATTTTGTCTGTGAAATGACTGTAAACTATTCTGACCAAGGTTGAATATTCTGTATGTCAATGTCAATGATTGTCTTGGATATCATATCTTATCACAATACAAATGATTTTTTACAGCATCTGTCATCATTATTGTCCAATAACTACATGAAGCCAGAATGAATGAAGCTGATTTCTCACTAGCAAGGCCATAAAAAAATGTATCCCTTTTTATAGCCTACACAGTTACTCAATCAACAATGCAttacaggaataatgaatcatacaAATTGTAAATGGAACAAAGAGAAAAGGTATAACACTATATTGTAGAAAGCAAGTAAGAATTCATGTGAGGAATGTACTAAGCATTTGGGAATGTGTGTTTTAAAATATAAGGACTTGATTGCAACAACTGGACAAGACAATGACTTCATGGATATTTGAGGATCTGATTGTATTCGTTGCATTTCTGCTGAAATGTCCACTATACATTCTCTCTAGTTAGAGGCCAATATTACAGATTTACCACATACATTAtatcagatatatatatatcaatatacATTATCTTGTATATTCCTCTGTAGTGGTTTTCTGACTCTGAATTGATCAGACATTATAGTGCCACAGGGCTACATATCCCTATATCAGTTATATCCATAGTGTGGAGAAATCTGTACATAACAAAAGTTGATATtatcaaataaagaaaa

Function

NR:

description
putative claudin-24

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571394.2 True 2112 mRNA 0.45 1 24207344 24209455

Neighbor

gene id symbol gene type direction distance location
LOC110495882 LOC106574255 coding downstream 31361 24167580 ~ 24175983 (-)
LOC110495873 LOC106575174 coding downstream 134985 24043236 ~ 24072359 (-)
LOC110495872 LOC106574245 coding downstream 204419 23999571 ~ 24002925 (-)
LOC110495870 LOC106574243 coding downstream 216442 23974941 ~ 23990902 (-)
LOC110495869 LOC106575170 coding downstream 236030 23948724 ~ 23971314 (-)
LOC118941245 NA coding upstream 16815 24226270 ~ 24226399 (-)
LOC110497104 LOC106574262 coding upstream 70692 24279738 ~ 24371432 (-)
LOC110495886 LOC106575190 coding upstream 243775 24453230 ~ 24465553 (-)
LOC110495885 LOC106575192 coding upstream 268860 24478315 ~ 24519903 (-)
LOC110495891 pnpla4 coding upstream 411222 24620677 ~ 24629312 (-)
G1529453 NA non-coding downstream 93575 24111695 ~ 24113769 (-)
G1529451 NA non-coding downstream 97741 24109363 ~ 24109603 (-)
G1529449 NA non-coding downstream 99247 24105126 ~ 24108097 (-)
G1529438 NA non-coding downstream 120875 24086203 ~ 24086469 (-)
G1529437 NA non-coding downstream 124944 24082167 ~ 24082400 (-)
G1529493 LOC106517624 non-coding upstream 3153 24212608 ~ 24213494 (-)
G1529494 LOC106574258 non-coding upstream 6346 24215801 ~ 24217224 (-)
G1529492 NA non-coding upstream 8357 24217812 ~ 24263095 (-)
G1529491 LOC106575185 non-coding upstream 9408 24218863 ~ 24221089 (-)
G1529530 NA non-coding upstream 57867 24267322 ~ 24267542 (-)
LOC110495852 LOC106574460 other downstream 663851 23542411 ~ 23543631 (-)
LOC110495851 LOC106574449 other downstream 666088 23479558 ~ 23541681 (-)
LOC110495841 LOC106574435 other downstream 1038753 23008547 ~ 23168591 (-)
G1528018 NA other downstream 1321511 22872045 ~ 22885833 (-)
G1527230 NA other downstream 1944882 22262056 ~ 22262462 (-)
G1529613 NA other upstream 183920 24393375 ~ 24393684 (-)
G1530967 LOC106574270 other upstream 940613 25150068 ~ 25150994 (-)
G1531142 NA other upstream 1309966 25519421 ~ 25523180 (-)
LOC110495915 NA other upstream 1363983 25571910 ~ 25574981 (-)

Expression


Co-expression Network