LOC100653456 (LOC106574258)


Basic Information

Item Value
gene id LOC100653456
gene name LOC106574258
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 24210985 ~ 24221099 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036952374.1
CAAATGCATTGTGGGAAGCAGAAATCTATGacgtcctcttctctcttttctaaACAGGTTTGGCCGGCGATAACCTAACACAGTATCAAAATGCATTCAATATTGATGATTATATAGCTAAGAGATATAGATGTCTTTATTTTGAGGAGTCGGGTTGTGTGAACAATGGACGGAGACGgGGCCAGCAGTACTGGGGCCACTCCCTCAGAGGAGATGAATGGTACTGGGAATCTGATGGACTTCCTGGACGAGCCCTTCCCTGACGTCAGCACCTACGAAGACTTCCACACCATTGACTGGCTCCGGGAGAAGTCACGCGACACAGACCGCCATAGGAAGATCACCACCAAGAGTAAGGAGTCTTACTGGGAGCTGATTAAGAGTCTTCTGGATGCCTGGTCAGGATGGGTGGTGATGCTGCTCATAGGAATGCTCACAGGCACGCTGGCTGGAGTGATCGACCTGGCTGTGGACTGGATGACCGACCTGAAAGAAggggtgtgtctgtctgcattCTACTATAGCCATGAGCAGTGCTGCTGGACCTCCAACGAGACCACCTTCGACGACAGAGACAAGTGTCCGCAGTGGCAGAAGTGGGCCGAGCTGATGACCGGTCACTCTGAGGGTGCCGGGGCGTATGTGTTGAATTACTTCCTGTATGTGTTGTGGGCGCTGTTATTCTCTTTCCTGGCTGTGTCTCTAGTAAGAGTCTTTGCCCCCTACGCCTGTGGGTCAGGTATACCTGAGATCAAAACCATCCTGAGTGGGTTCATCATCCGGGGGTACCTGGGGAAGTGGACCCTGCTGATCAAGACGGTGACCCTGGTCCTGGCTGTGTCCTCCGGGCTCAGCCTGGGGAAGGAGGGGCCCCTGGTCCACGTGGCCTGCTGCTGTGGTAACCTCTTCTGCTCCCTGTTCTCCAAGTACAGCAAGAACGAGGGCAAGCGCAGAGAGGTGTTatcggctgctgctgctgctggggtgTCCGTGGCTTTTGGAGCTCCGATTGGAGGAGTTCTCTTCAGCCTGGAGGAGGTGAGTTACTACTTCCCTCTGAAGACTCTGTGGCGCTCCTTCTTCGCTGCGTTGGTGGCAGCCTTCACCCTGCGCGCCATCAACCCGTTCGGCAACAGCCGTCTGGTCCTGTTCTACGTGGAGTACCACACCCCCTGGTACATGGCTGAGCTGGTCCCCTTCATCCTGCTGGGGGTGTTCGGGGGCCTCTGGGGAACCCTCTTCATCCGGGGGAACATCGCCTGGTGTAGGAGGAGGAAGACCACTTTGCTGGGGAAGTACCCCGTTCTAGAGGTGATCGTGATAACGGGTATCACCGCGGTCCTGGCGTTCCCTAACCCGTACACGCGGCGCAGCACCAGCGAGCTCATCTCCGAGCTGTTCAACGACTGCGGTGCGCTGGAGTCCTCTCAGCTGTGTGACTACGTTAATAACCCCAACATGAGCCGTCCGGTGGACGACATCCCAGACCGCCCTGCTGGACCCGGGGTCTACAGCGCTCTGTGGCAGCTGGCCCTGGCGCTTATCTTTAAGATAGTTATTACGAtcttcacctttggcatgaagATCCCGTCTGGGCTGTTTATCCCCAGTATGGCTGTGGGGGCCATCGCTGGGCGAATCGTAGGCATCGCTGTGGAGCAGATGGCCTACCATCACCACGACTGGATCATCTTTAAGAACTGGTGTCGTCCCGGGGCCGACTGTGTTACCCCAGGCCTCTACGCTATGGTGGGCGCTGCCGCATGTCTGGGAGGTGTGACCCGGATGACCGTGTCCCTGGTGGTCATTATGTTTGAGCTGACCGGTGGTCTGGAGTACATCGTCCCCCTCATGGCCGCAGCCGTCACCAGTAAGTGGGTAGCGGACGCCTTTGGGAAGGAGGGTATCTACGAGTCCCACATCCAACTCAACGGCTACCCCTACCTGGACGTCAGGGACGAGTTCACGCACAGGACCCTGGCCACGGATGTGATGCGTCCCAGGCGCAGTGAGCCGCCCCTGGCCGTGTTGACCCAGGACAGCACCACAGTGGAGGACGTGGAGACGCTCATCAAGGACACCGACTACAACGGCTTCCCTGTGGTCGTGTCCCGAGAGTCAGAGCGCCTCATCGGCTTCGTCCAGCGCAGGGAACTCACTGTGGCCATCAagACTGCCCGTCAGAAGCAGGACGGGGTGGTGAGCAGCTCTGTGGTCTACTTCACGGAGGACAACCCCCAGGTGGCCGAGGCCTGCGACCCCCAGCCCCTGAAGCTGCGGCGCATCCTCAACCTCAGCCCCTTCACCGTCACGGACCACACCCCCATGGAGACCGTGGTGGACATCTTCAGAAAGCTGGGCCTCCGACAGTGTCTGGTCACCAGAAGCGGgCGTCTGTTGGGCATCATCACTAAGAAGGATGTCCTCCGTCACATGGCCCAGATGATGAACCAGGACCCAGAATCCATCATGTTTAACTAGTTGCCCAAGAAGAAGAAGCTTTATTATCCACAGCACCTCTTTGCCCCTCCCCTCCCTTAGACTGTAAATAGTGAAACGCTACTGTAACCTGTAATAAAGAAAAGTCACCTCTCAAATACAGGCCCCCAGTGTTTAGAATGCAGGGATGGAGCAAGAGGGGTGAAGAAAGAGGGGGATCAGGACTAAGATGGATAAATGCAACAAAGAAAATGGACGGATGAATAAAGTGGGGTGTAAGGACGAAGGAGGAGGATGAATGAAGAGGGTGTGAGGACCAGGAAAGAGGGATCAAGAGGGCGGGGTGGAGGAATAGGGGTGTGAGGACCAAGATGGAGAGATGCCGGAAGAGAGGTGTCAATCATGGCAAGGAGGGAAGCATCTTATGTCTGGGGTGAGTATGTTTTAGTTTGATGTGCTGCTGACGCCATATTTATGTTTTCAGTGACGCTTCAAGGCCGACTGCAACTGACTTCAGTCTAAGTTGTCAATGTTACGTTGGTGGCCCTTAGAACCCATTGTTCCCAGGGTATGTTTCACATGTTGATGTTACTTTGACATTTGCGGCTTCTCAAATGTTTCTCAATATTGAACTGTAATAACATAGTTTTaacactggtactgtatgtatttgctAGAAGACCGCGTATCGCGTATCATGTCAATTGATTTAGTTTATccaggatgtttttttgtttttttttgcaataaAGAATGCACTTTGGAAGAGAAATAGCTGAACCAGAAAACACCACCAAGTACAATGTTTTTCTTGTTACTTTATATTTCTCACTCCATGCTGTCCCTCACCAGTTTCCTAGGTTTTGTTTTAATATGCCGAGGGAATGTATTGTGGAAAACAACTGTGGAACTATTGAACCTGCCTCACTTCCGTTCTGTTTGTTTTATTCTGACGAGCCACTGTGGTTGTGGATTTAGCCACACTAGGTTCTCTTTGTCATTTCATAccgatattttttttaaatccatccatccattgttACTACTGTATTGAGAAACTATCAATTTGTCATTATCTCAAGCAATTGAACActactgtagtgtatatgtaTTATTCTAATATGAGCTGTTCAACATTACTGTAACTTGGAACTGGTACAGAAAACGGATATTAGCACTTTTGTTGGTGTTTGTAAATAACGTCTAAGTGATGCACAATATACTATTTGCAATGTTCTGACATTAAAAGGGAGGTTGTGTCAACAAGGA

Function

NR:

description
PREDICTED: H(+)/Cl(-) exchange transporter 4

GO:

id name namespace
GO:0034765 regulation of ion transmembrane transport biological_process
GO:1902476 chloride transmembrane transport biological_process
GO:0044070 regulation of anion transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0030554 adenyl nucleotide binding molecular_function
GO:0005247 voltage-gated chloride channel activity molecular_function

KEGG:

id description
K05012 CLCN3_4_5; chloride channel 3/4/5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036952374.1 True 3708 mRNA 0.52 14 24210985 24221099

Neighbor

gene id symbol gene type direction distance location
LOC110497103 LOC106574257 coding upstream 9371 24199574 ~ 24201614 (+)
shroom2b NA coding upstream 11555 24176311 ~ 24199430 (+)
LOC110495878 LOC106574254 coding upstream 43390 24153245 ~ 24167595 (+)
LOC110495879 LOC106574251 coding upstream 57900 24148001 ~ 24153085 (+)
LOC110495876 LOC106575177 coding upstream 76758 24122756 ~ 24134227 (+)
LOC110495884 LOC106574260 coding downstream 1730 24222829 ~ 24263106 (+)
LOC118941069 NA coding downstream 244439 24465538 ~ 24472111 (+)
LOC110495888 ralbb coding downstream 251000 24472099 ~ 24477037 (+)
LOC110495887 LOC108430494 coding downstream 299598 24520697 ~ 24525649 (+)
LOC110495890 LOC106574267 coding downstream 335138 24556237 ~ 24574771 (+)
G1528766 NA non-coding upstream 80306 24129929 ~ 24130679 (+)
G1528760 NA non-coding upstream 103210 24106210 ~ 24107775 (+)
G1528762 NA non-coding upstream 107149 24103507 ~ 24103836 (+)
G1528763 NA non-coding upstream 123910 24086854 ~ 24087075 (+)
G1528755 NA non-coding upstream 136972 24073803 ~ 24074013 (+)
G1528779 NA non-coding downstream 44423 24265522 ~ 24265839 (+)
G1528789 NA non-coding downstream 57803 24278902 ~ 24279115 (+)
G1528791 NA non-coding downstream 58755 24279854 ~ 24280075 (+)
G1528792 NA non-coding downstream 60262 24281361 ~ 24281731 (+)
G1528794 LOC106574262 non-coding downstream 65541 24286640 ~ 24286937 (+)
G1528194 NA other upstream 1049694 23158833 ~ 23161291 (+)
LOC110497098 LOC106574424 other upstream 1599533 22599016 ~ 22641368 (+)
G1525320 NA other upstream 3453573 20756691 ~ 20757412 (+)
G1524181 LOC106574559 other upstream 3727272 20473360 ~ 20483713 (+)
G1524124 LOC106574554 other upstream 3904081 20305705 ~ 20306904 (+)
G1530367 NA other downstream 783662 25004761 ~ 25005609 (+)
LOC110495895 LOC106574270 other downstream 927884 25133210 ~ 25157338 (+)
G1530785 NA other downstream 1345372 25566471 ~ 25571346 (+)
G1530923 LOC106574292 other downstream 1617407 25838506 ~ 25840353 (+)

Expression


Co-expression Network