LOC110497104 (LOC106574262)


Basic Information

Item Value
gene id LOC110497104
gene name LOC106574262
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 24279738 ~ 24371432 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036952397.1
ggggagagagagaaccagattGAAAACATACCAGCCTGGCGTCTCAATACCACATTTCTGACGAAGAACGAACCACCCTCAAACCTTTTAGACCTCTTCAGGCTACAAAGTTCGATATCGTGCAATGTTTTCTTAGTAAGGGAGGATCGATTTCAAAAACTTGTTTCGTTTATTCTCGGTGATGGATTGTAAAAAGTTGAGTCGACACACATAAAGTCTTACGGTGAACTTTATGAAAAGTTGGGAAGAGGAATGTAGTTAGTCTTGATCGTGTTTAGGCTACTAGAATATAACTTATGGATTTCATCCTTGCATTGGAAGGAGTGTGTTACTTCTTGCTTTTTGACCGAGAAAGTTTGACCTAACGGTAATCTTCGATCGCGTTGCTTGTATAGAACTAGTGGGCAAACAGAACCGAGGGAGACGCACCGGGTCAGACCATACCGACCACAGGTATCACCACTGAGAGCTTCTGATGTCCAGAATGGAGACCTCTGCCCCGACGACCACAGAGAAGAAAGGCTCTGGTCTGGATGGAAACGGCTTCACTGACCTCCCGAGGAAACTCTCACCTTCAGCTGTCACCAGAGCCCCGCACCACGTCTTCCCGACGTTCCACACGCCCATCCCGATTGACATGCGTCACCACGAGGGAAGATATCACTATGAACCCCACACCCTACATGCCATGCATGGtcctggACTAGGTGGCAGCCCGGTCATGTCAGACATCTCTCTGATCCGTCTGTCCCCCCACGCAGCCGGGACAGGGGAGTCCCCCTTCAGCCCCGCTCACCCCTACTTCAACCCTCACATGGAGCACTACCTCCGCTCCATTCACAGCAGCCCAACCCTGTCCATGATCTCTGCGGCCCGCGGACTCAGCCCTGCAGACTTGGCACATGAACACTTGAAAGAGCGGGGTCTGTTTGggtttccccctccccctcctggaGCCAGCCCTGCTGAGTACTACCACCTGATGACCAGCCATCGTAACCCCTACGGAGAGCTGCTGATGCAGGGGGGTGGGGCGGCAGCTGCACACCTGCCAGACTACATCACCCCCATGGAAGCGTCACGGTTCCCCAGTCCCAGACTGACCCCCAGGCTGAACAGAAAGCGAGCCCTGTCCATCTCGCCTCTCTCAGACGCCAGCATCGACCTGCAGACCATGATCCGTACCTCGCCCAACTCTCTGGTGGCCTACATCAACAACTCACGCTCCAGCTCTGCAGCTAGCAGCTCCTACGGACACCTCTCTGTTGGAGGCATCAGTCCGTCCTTTACATTCCCCCATCACATCAACCCCATGGCCTACCAGCAGCTCCTGTCCCAGCAGAGAGGCCTGAGTGTGTTCGgccacacccctcctctcatccaGCCCCCACCCATCTTCTCCAGTCGCCAGTCTGCCCTgggtctctcctctctgccccccGCCTCACACAACCACAACAATGGCTCACAGTCAAAGAGCACATGTGGGGACTCGGCAGTGAGCAGTACAGTCAATCCCATGAAAACCAAGAGGTCAAAGGTGAAGACAGAGGTGGAGTATCCGAGGCCGCTGTCCCCATGCTCTCCGGATCATCTAGGTGGGATGCTGGGCCTGAAGGAGGACTTGGATAAAGATGAATGCAAGCATGAGCCAGAGATGGTGTATGAGACCAACTGCCACTGGGAAGGATGCTCTAAGGAGTACGACACGCAGGAACAACTGGTCCATCACATCAACAACGACCACATCCACGGGGAGAAGAAGGAGTTTGTGTGCCGCTGGGATGAGTGTTCCAGGGAGCAGAAGCCGTTTAAGGCCCAGTACATGCTGGTGGTTCACATGAGgagacacacaggggagaagccacaCAAGTGTACCTTTGAGGGCTGCTGTAAGGCCTATTCTCGCCTGGAGAATCTGAAGACCCACCTGCGATCTCACACCGGGGAAAAACCATATGTGTGTGACCACGAGGGATGCAACAAAGCCTTCTCCAACGCCTCGGACAGAGCCAAGCACCAGAATCGCACACACTCCAACGAGAAACCCTATGTGTGTAAAGTCCCCGGGTGTACGAAGCGCTACACGGACCCCAGCTCTCTCAGGAAGCACGTGAAGACAGTCCACGGACCAGAGGCCCACGTCACCAAGAAACAGCGCAGCGACCTGCCGCCCAGCAGACCCGTGCCACCCAAAGAGAATGGAGAGAACGAGACAGGCCGGGGCACGGAGGAGAAGATGGACAGCACCTCGAGAGGCATGGAGGACTACCTGCAGGTCAAGTCTATCAAGACGGAGAAGTCTGTGatgtatcAGTCCAGCCCTGGTGGTCAGTCGTCATGTAGCAGCGAGCCGTCGCCACTTGGCAGTTCCACCAACCATGACAGTGGAGTAGAGATGGCCCTCCACAGCGGCGGGGGCAGCATGGGGGACCTGACTGGACTGGACGACCCCTCGGGGCCCCTCGTGGACTCCTCCTTCTCTGGCCTCTCGTCTGGGACAGCAGGGGTCGGGGTGGGCCTCCACCTACGTCAACACCTAGGCCTCAGCCACATCCACAGACTAGAACACCTGAAGAAGGAGAAACTGAAGACGGCGAGGGACTCCTGCCAGTGGGCCAATCATCATCCAGCTCCTCCAGTCCAGAACACCAAGCTACCGCCCATACCAGCAAGCGGGACCCTTTTGGAGAGTGGAAATATGTGTGGCGGGCCTGGATCGTTCAGCCTCAGTGAGCTGTGTTCCAGTAAGGTGACTGTCCTAAACCAGCTGGACCATCTGATGGAGCGCAGGGACAGCGCCACCAGCACCGTCTCCTCTGCCTACATCAGCCGCCGCTCCTCTGGCATCTCCCCCTGCTACTCCAGCCGCCGCTCCAGCGACGCCTCCGCGTTCAGTGGCCACCGCCACCACAACATCAGCTCCACCGGCTCCTACGACCCCATCTCTGCAGACCTGTCCCGCCGCTCCAGCGACGCCAGCCAGTgtgggggtggtggaggagggggacgGCTGCCCAGTCACCTCAGCCTCACCCCCGCCCAGCACTACCACCTCAAGGCGAAATATGCGGCGGCTACAGGCGGAGCCCCACCCACACCTTTACCCAACATGGAGAGGATGAGTCTCAAGACCTGCTTGGCCCTCTACAGGGACGCTTCCCAGGGAGACTCGTCGTCTGGTTACTCCTCCTTCGACCCCGTTATCCCCAGTGGGGTTCCCAGGCGCTGCAGCGGCGATATGGGAAACTATAACGGCCGCAGCATGATGCCCCACGAAGCTCCGTCCAACATTCCCCGTCGGGCTAGCGACCCCGTCCCCCGGCGGCCGTCCCTGGACCCACTGTCCCCGCTGTCCCATCAGCCTCAGGTGCAGCGCTACAACAGCACGGGCAACATGCAGAACCTCCCCCCACACGCCTCCCTGCCGAACCAGGCCCTGTCTGCAGCCGAGCGGCGCCACCTGGTGCTCCAGAGCCACCAGCCGCGCTCCGACGACAGCCTGCAGCGATACCCCTACTGCCCCCGGCCGCCCAGCATCTCTGAGAACGTGGCCATGGAGACCATGGCCGGCGATATGAGCGGTAGACGCAACAGCAGTGAGGAGGAGATGATGGTACTTCCGGATGACGTCGTTCACTACATCACCGCTCAGGGCGGAGCTGGAGAGTCAGACTGTGCCAACCGACAAGCACAATGCGGTTTCCATGGAAACGCAATAAACCCTAACCCCCAGCAACAACAGCAGTTTTACCACCAGCGAAGGATGGCTGTGGTGGACACCAATATGAGTATGAACCCTTCGTCTGCACCACAAACCAAGCGCCTCTCCTGTGCCCTAAGCCCAGGCCATCCGAAGCAGTCTTTCCCCTCCTCACTCAGTAAGACGAGCACCATGCCGGTACAGTGGAATGAGGTCAGCTCAGGGACTGTGGAAGCTCttcacaacccaacccaacatcTGCCGTTCGGTCGAAGCGACTCAAACCTCGCCATGGTCCAACAGAAACAGAACTTTGTCTCGTTTCAGAAGCAGAATCTTAACTCCAACCAACACATTGCACAGATTAACCACAACCTGGCTCATGCAGCTCATCAGGGGAGATACATACAGCAGCAGAGGACAGACTCCAGGCTGGGCTGTGTCCAGCAACAGAGCCTACAGCAGCAGCAGCCCGCTAATGCTAACCTCAATGAACGAGTGAGCCTCGAGTATGGGTTTAACCAGGGTCTCGGTCCTAGTGATGCTAACGCTAACCAGCGGTCCTCCTGTAGTAGTATGGCAGTTGGTGGCACAGTGCACAGTGTAGACACGCAGAACAGCCGACTGAGGACGCAGCCAGTGGGGAGTCAGTTGTCTCAAGTCACATTTAAGGATAGCGGTGTGAACTCTTCGCGGATGATCTCACATCAACAGAAATATAATATAGCGTCCCAGGTTCAGCATCCTATACAGAATGGAGGTCAAATACTCATCCAGCCAAGACCGCCCACAGAACATAAGTCTCTAAGCAGACAGCATTCAGGGTCAATGACAATCCAGCGACAACACTCAATAGGCAATCACTGCAGCAATGGCAACAACACAGACAACAATGTTATGTTCTACACAGGACAGATGCACGTGTTTGGGCCAAACGGGAACGTCAACACGCAGACGATGACATCACCAGTAGTGGATGTTCTTCAATGTCCCTCAGACAGCACTGAGACCTCAATGACCTCACCGGGAGTAAACAACCAGGTCTCCAGTACGGTGGACTCGTCCAATGGGACAGGGGCAGAGGAGCCCCAGATTGACTTTGACACCATGCTGGATGATGGGGACCACTCCAGCCTGATGTCAGGCACCATCAGCCCCAGTATCCTCCAGAGTCTGTCCCAGACCTCCTCCAGACTCACCACCCCCCGGAACTCTGTCACCCtgccctcccttcccctccctgcAGGGGGCAGCAACATGGCCATCGGCGATATGAGCTCCCTGCTCACCGCGCTTGCAGAAGAGAACAAGTTCCTCAGCATGATGTCATAAGGATGATCCCAAATACGCTGAAGGCAGACACAGGTAAAGCACACGGTACCTACCTTGGTGTATTTGGCCCAGGACGTGTGTTAAAAGAAGTGACCTATTGTAACCCAAGCTCTAAGAACGATAGTTTATCTGCCACCAAGAGTTTAAACTGGCTGTGTGAATGACACGAGGGGAACCTACTAGTTAACATTGTTGCAGAGGTCCTCCTGACCATGTGATTGAACACTAAGCACCTCATTGGAGAACTTTGACGACCACCAGAGACTAAGGAACCTATGAGATTCTGAAGACTTCATGCTAAAACACCACTATGTTTGTGCTACTTATTGTATTATCCTGTACAGTATCATTATGGAGCTAATATGGCGATTTCATATCTATTGAGAAGCCATATTTTGCCTTAGATGAGTAAGTAAGTACATTGTGATCCACAGCACAATTCTGTTAATGTTGTACATGAGATAGTGTACAGTTCTGCAGTAAAACAAGTTTACCAAGTGCCTGGCTATGCCGCAGAATATGCAAGACACGCATATGACACAGATCGCATTGAAGTGCAACCAGATACCGATTTTGGGATTTTTTTCTATCATTTAGTTATTTAAAGACACACATATATGTAAATTGTGTAAATGACTTGATCTAAAAAAAAAACCCGATTTGATTCTGTCTCTCAGATCTTATCTGAAACTCATTCATCTGTGCAGATTAgatgttctcttcttctgtcAGTGAAGTTGCAGCAACAAAAGAATCTGGGAGAAAAATGATTAAATCATTCAATAGAGTCAGAGGAAATCTTTTTTTCTAATCTATTtagtcatgtcaggtctactTCCACACAGTGTCTTCGATATGAGCCGTCGTCTTATTTGTCTGCCGCGTTGAGTTGGACTACTGAGATGAACAGTGACGTCTCAGTGTCGGGGACAAGTTGTGGCTGGAATTAAGCAACCACTTCTGAAGAATATGCAAACGCTTGATATGATACATATTCTGGGGGTGACAACATTGCTATTAACTCTTGGTGATGAATTAGGAAAAATCTAAAAGGGAAAGAGAATCCTCCTTTTCGGTGTCAAATGACTTTTTCTCCAGTACCGCCCTTGATGATGACGAGGATACTAAGATATCATAGTGTATTAGGAATctacgttttttttttgtatactGCCATGCAACTCTGTTGTGTTGGATATGTATATATCTTTTGTACATTTTTATGAAATACAATATTGTTTTTTTTGGGTTTTTTCTATTTAATTGCTGTCTGGTGAGTTATTTCAAACCATGGGTGTTTTTTCTCATGGAATATGACATGTTTGAAATTATGTTGCGTTGTTTTAGGTCTCCAATATACAATACCAGGCCGATTGAATTCAATTGGCCTATAAAATTCACATATAAAGAAAAGTCCCATGTACAGAAATCCCCCCCACAATATAAATGGTACGTTGTTATATTTCCCACTCCTTGGTTCAAAACggaacatagagacagtagacacaATAGACAGTAGCCAGTACATCAGAGAGTTGAACTGTTCTTTGAAAACCTCTCCTTTAATCTTATAAGTATATGAGTGTTGATTGCTTAAATAATTCAGGAGGAAAACTTTCTTCTTTTGAAGCCAcacaagttctctctctctcctttgctgCCAACAAAGCATTTTTCCTCCCACATTGAATCCTATCATATCATATCTTATAAGACTATCTTTCAAGGTAATTATGGAGGCTTTGAAATAGGTTCTTCTGACCCCGTCTTGCCCCCCGCTTGTAATGTTGGCCTGCACACAATGCTAGTTTCACTCCAGAAGCTGATGAGAAAGGGCACACTTGTAAAACCGCAAAGTGCATACAGAGCAGTTGCTAACGTTAACCTGTGTGTCGTCCAACATTACCAGGGACAGATTGGCCCAAAGGAAATGGCTGTTGAAaccacataaaacacacacacaccagttagagagcgagtgagagagggagtgagagagagagagagagagagagttccaggGAGGGACAAAGCGTCAAGCAAGAGTGTTAGCGCTGAGGAACAAATGATTTTATTCTGACAGGGAATTCAGCCGAGAATACGTTTGATCTGAGGTTTTTGAGAGCTTTTGCCACTGGAATTCCTTATTCTCTCAGAGAATTGAAAGAGAGAAAATAGCCCGAGGATATGAAATCGTATCAGTAAAGGGGTTAGTGAGACTCAAGTCATAAATTAGCAACACCTAAATTTATTGGTACTGTAGATCCAACAGGATGATAATAGGCAGATGTACTGACTTGTGTAGCATGTATAGACTACAAACACATTAGGCAGACAGTGAGGGGTTCTTAAAAAATCTGGAAATGTTTTAAAAGAACCCAGGTTTATTACAGGAGGCACCAGCCTTAACCTCAACCTTatcaaccttaaccctagcttcatgtccacatccaggttcaaccctaaccctagcttcatgtcca
>TU1751209
GGATATGAAATCGTATCAGTAAAGGGGTTAGTGAGACTCAAGTCATAAATTAGCAACACCTAAATTTATTGGTACTGTAGATCCAACAGGATGATAATAGGCAGATGTACTGACTTGTGTAGCATGTATAGACTACAAACACATTAGGCAGACAGTGAGGGGTTCTTAAAAAATCTGGAAATGTTTTAAAAGAACCCAGGTTTATTACAGGAGGCACCAGCCTTAACCTCAACCTTatcaaccttaaccctagcttcatgtccacatccaggttcaaccctaaccctagcttcatgtccacatccaggttcaaccctaaccctagcttcatgtccacatctcggttcaaccctaaccctagcttcatgtccacatctcagttcaaccctaactctagcttcatgtccacatctcggttcaaccctaaccctagcttcatgtccacatctcggttcaaccctaaccctagctccatgtccacatctcagttcaaccctaaccctagcttcatgtccacatcttggttcaaccctaaccctagcttcatgtccacatccaggttcaaccctaaccctagcttcatgtccacatctcggttcaaccctaaccctagcttcatgtccacatctcggttcaaccctaaccctagcttcatgtccacatctcggttcaaccctaacactagcttcatgtccacatctcggttcaa
>TU1751210
TTATCTGAAACTCATTCATCTGTGCAGATTAgatgttctcttcttctgtcAGTGAAGTTGCAGCAACAAAAGAATCTGGGAGAAAAATGATTAAATCATTCAATAGAGTCAGAGGAAATCTTTTTTTCTAATCTATTtagtcatgtcaggtctactTCCACACAGTGTCTTCGATATGAGCCGTCGTCTTATTTGTCTGCCGCGTTGAGTTGGACTACTGAGATGAACAGTGACGTCTCAGTGTCGGGGACAAGTTGTGGCTGGAATTAAGCAACCACTTCTGAAGAATATGCAAACGCTTGATATGATACATATTCTGGGGGTGACAACATTGCTATTAACTCTTGGTGATGAATTAGGAAAAATCTAAAAGGGAAAGAGAATCCTCCTTTTCGGTGTCAAATGACTTTTTCTCCAGTACCGCCCT
>TU1751211
TCAGACTGTGCCAACCGACAAGCACAATGCGGTTTCCATGGAAACGCAATAAACCCTAACCCCCAGCAACAACAGCAGTTTTACCACCAGCGAAGGATGGCTGTGGTGGACACCAATATGAGTATGAACCCTTCGTCTGCACCACAAACCAAGCGCCTCTCCTGTGCCCTAAGCCCAGGCCATCCGAAGCAGTCTTTCCCCTCCTCACTCAGTAAGACGAGCACCATGCCGGTACAGTGGAATGAGGTCAGCTCAGGGACTGTGGAAGCTCttcacaacccaacccaacatcTGCCGTTCGGTCGAAGCGACTCAAACCTCGCCATGGTCCAACAGAAACAGAACTTTGTCTCGTTTCAGAAGCAGAATCTTAACTCCAACCAACACATTGCACAGATTAACCA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036952397.1 False 7518 mRNA 0.51 14 24280147 24371432
TU1751209 False 709 TUCP 0.45 1 24279738 24280446
TU1751210 False 427 lncRNA 0.40 1 24281523 24281949
TU1751211 True 404 TUCP 0.52 1 24283591 24283994

Neighbor

gene id symbol gene type direction distance location
LOC118941245 NA coding downstream 53748 24226270 ~ 24226399 (-)
LOC110495883 LOC106575186 coding downstream 70692 24207344 ~ 24209455 (-)
LOC110495882 LOC106574255 coding downstream 104164 24167580 ~ 24175983 (-)
LOC110495873 LOC106575174 coding downstream 207788 24043236 ~ 24072359 (-)
LOC110495872 LOC106574245 coding downstream 277222 23999571 ~ 24002925 (-)
LOC110495886 LOC106575190 coding upstream 81798 24453230 ~ 24465553 (-)
LOC110495885 LOC106575192 coding upstream 106883 24478315 ~ 24519903 (-)
LOC110495891 pnpla4 coding upstream 249245 24620677 ~ 24629312 (-)
LOC110495893 LOC106574268 coding upstream 491541 24785889 ~ 24939922 (-)
LOC110496921 hdd1a coding upstream 616309 24987741 ~ 25004133 (-)
G1529530 NA non-coding downstream 12605 24267322 ~ 24267542 (-)
G1529492 NA non-coding downstream 17052 24217812 ~ 24263095 (-)
G1529491 LOC106575185 non-coding downstream 59058 24218863 ~ 24221089 (-)
G1529494 LOC106574258 non-coding downstream 62923 24215801 ~ 24217224 (-)
G1529493 LOC106517624 non-coding downstream 66653 24212608 ~ 24213494 (-)
G1529618 NA non-coding upstream 25203 24396635 ~ 24396872 (-)
G1529620 NA non-coding upstream 25806 24397238 ~ 24397475 (-)
G1529621 NA non-coding upstream 26105 24397537 ~ 24397744 (-)
G1529624 NA non-coding upstream 29128 24400560 ~ 24400774 (-)
G1529791 NA non-coding upstream 91186 24462618 ~ 24462861 (-)
LOC110495852 LOC106574460 other downstream 736654 23542411 ~ 23543631 (-)
LOC110495851 LOC106574449 other downstream 738891 23479558 ~ 23541681 (-)
LOC110495841 LOC106574435 other downstream 1111556 23008547 ~ 23168591 (-)
G1528018 NA other downstream 1394314 22872045 ~ 22885833 (-)
G1527230 NA other downstream 2017685 22262056 ~ 22262462 (-)
G1529613 NA other upstream 21943 24393375 ~ 24393684 (-)
G1530967 LOC106574270 other upstream 778636 25150068 ~ 25150994 (-)
G1531142 NA other upstream 1147989 25519421 ~ 25523180 (-)
LOC110495915 NA other upstream 1202006 25571910 ~ 25574981 (-)
G1531236 NA other upstream 1325107 25696539 ~ 25708874 (-)
G1529542 NA non-coding upstream 5028 24286977 ~ 24287306 (-)
G1529544 NA non-coding upstream 9450 24291399 ~ 24291645 (-)
G1529545 NA non-coding upstream 10063 24292012 ~ 24292241 (-)
G1529549 NA non-coding upstream 14131 24296080 ~ 24296312 (-)
G1529561 NA non-coding upstream 36882 24318831 ~ 24319223 (-)

Expression


Co-expression Network