LOC110495886 (LOC106575190)


Basic Information

Item Value
gene id LOC110495886
gene name LOC106575190
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 24453230 ~ 24465553 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571398.2
CCTTAAGCCTATGCATAATCTCCTACCAAATACTAGGagtctgtttagttggtgggACGTCCCACGTGGTTTCAACTCCCTGTATAAAAACTTTCAGTCTATGGAGGACTCCTAAATCGACCTAGCAAGAGAAAGGTTCGTCCGATCGTTAGACCTCTTTGTGCTCAAGTATATCAGGGCAATTTCATATCGGGAATTCAAATCCAATTAAGGTGCATTTTAACAAGGATACACAGGAACAAAAACTGAAGGAATAAGTCCAAAGCAAATGACAAACTGGATGCTACAATATGCGATAAGTTATTATTTGACCGACCCTTCAGCTTTTTCCATTTATGGAATATCCTGATTTGTGTTTATCAACCAATGGGTGATTTTCCTTTCGTGTAGTTTGTCCTCTTCTATTCGTTTCTAAATTATGATTATTGCGAATTGCAGTTCAATTAAACCATGGCATGATACGTCAGGCATTGAACTGAAACTCAATTGACGGATAATGGTAGCCTACTGATTTTTTTAATTGTGTTACCTTGAAAGGGTGAAGCAAAGGCATTGAGACAAGCAGAACGGACTTGACTCCCAATGTGCCCCTGAAGTGAAGTCAACTGAGTGACAGACATCGGGAATGAAAACAGACACCAAATAAGGGGAATATTTCAAGTTACGGTGAATGGAATAGTTAATTCCATCAAAATGCGTCTGAATTGAGTGAAATATTTATTATTGCTTGGACTCCTTACAAAGTATACGGACTAACGGGATTCTACAACATTATCTTTCTTTTCATTCGAAATCGTATTTTCTTAAAAACGCCAAGTGAATAGCCTACATTTGACAGAAATATTGTGCAAACATTTTTATAGTAGAAAACGAATTATTGCACTACAAATATCACGACTTTTCTTCTTCATAAAGAAAATGATTAACTGTATAATCAAAGTGGCATTATTTGTGGCTTGCGTGCTGTCTGTCCGCTGCAAAGAAGCGGCGCCGGGATCCTTGAACCCTTTGCCGGGAATGGAGACGCAAACCGTAGCTCAGGAAGCTTGCTCTTCGTGTGGCATCGGTCAGCCCGAAGAATCGGGACAGGTGGACATTGACTTTCTGGAGACGGTGAAAAGGCATATCTTGAGCAGGTTACAGATGAGGGTAAGACCCAACATCACCCATCCTATCCCGAAGGCGGCGATGGTGACTGCGCTTCGGAAACTACACGCGGGTAAAGTGCGCGAGGATGGGAGAGTAGAAATCCCGAATCTGGATGGACACGCGACCAGCAATGCCAATGACGTGCTGGAGGAAAGCTCGGAGATAATCAGTTTCGCAGAGACAGATGAGCAGGTATCATCCAAATCCAGCCTGTTCTTCCTGATCTCCAATGAGGGAAACCAGCACCTGTACGTGACCCAGGCCACCCTCTGGCTGTACTTAAGGCTGCTTCCCAACACCCTGGACAAGGGCCAGCGGAGGAAGGTCACAGTCAAGGTGTACTACCAGGAGCCTGGCCTTGGCAGCAAGTGGAGCCTGGTGGAAAAGCGTGTCGAGCTGAAGAGGAGCGGCTGGCACACCTTCCCCCTGACCAACGCTATCCAGATGGTGTTCGAGAAGGGCGGCCGGCGGCAGAACCTGGACGTGCGCTGTGAGGGCTGCGAGGACCTGGCGGTCTTCCCGATCCTCGTGAACCAGAACGACGAGTCCCACAGGCCGTTTCTAGTCGTACAGGCCCGGCAAGCGGACAACAAGCACCGCATCAGGAAGAGGGGGCTGGAGTGTGACGGGAGCAGTAGCCTGTGCTGCAGGCAGCAGTTCTACGTAGACTTCCGCCTCATCGGCTGGAACGACTGGATCATCGCGCCGTCGGGGTACTTTGGGAACTACTGCGAGGGCAACTGTCCAGCGTACATGGCGGGGGTGCCAGGGTCGGCGTCGTCCTTCCACACTGCAGTGGTCAATCAGTACCGGATGAGAGGCATGAGCCCCGGCTCCATGAACTCCTGTTGCATCCCCACCAAGCTCAGCACCATGTCAATGCTCTACTTCGACGATGAATACAACATCGTCAAGAGAGACGTACCCAATATGATCGTGGAGGAGTGTGGATGCGCTTGAGTTGAGACTGCATGTGCTTCAAGTGGACTTTCATGAACATTTGTAAACAAGAAAAGGATATTCCAAAATGAATTATAGAAATCAAAGTGATATTTATGGACAATTATAAGGCATAAACACATGCATACACAGCTTCATTCATTCACACATATCCTACACACTCATTCTCACATATGCCTGAACAAACActtgtatatatatttatgtttgttaATAATATTCTCTGGTAGAAACCTTTTTTCTTTTGCCAACATATGAACATGTGATTCAATCCCATTTTTTTGTGAACATGTGTTTGCAAATTCATGTAGGTGTCATTATCAGAGGGATTGGAACCAAATGGCATTATATCTTTTCCAAGATTGCCATTTCTATTCTGAAAATGGAGAGTTCTATTTCGATACTCTGACGAAGGTGGAAAAGAGCCTGAGATTATGAAGGAGGTGCGCTTGCTGATAGACAATTCCAAACCACGCCTCTCTCAAGAAAGTATGAGTGCAAAATGTATAGTGAAAGCCCTGACAACTCACCTCTTGTACAACTTCAGCACTTCTACCAAGAAATACATCTTGTCGATGTGTCACAAGATTCcatttttctgtaaaaaaaaaaaaaaaacgtttacaTTTCACGGGCCAGCATCCGGAAATCAAAATGGCTTCCATGTCAGAAGAGTGAGCGGAACATAAAAATTACATTCCAACACACCATGCAAATGCTGAGGCTGTCATCAAAACCTGGGAGTTTAAGCTGTGATGTGAAACAGTGACAATAGGGAAGAAACCTTGACCTTCCCGTTACTTCCTTCCGAATCCTTTCTTCTTGCGTTCACACTTTGAACGGGAAGAGTCGACATTTCATCAACAGCCGAAGCACAACCTCTCATTTCAGTCAGCCAATCAAAAGCAAAGAGTTGCCATGTTGTTTGGTTTAAAGTCCTGGCGCAGCATAGCACTTCCTAATGCACATTAAATAGCACTTGCAGATTTAAATGCCTTTAAAGAGTACAATGTGGTACACCGACCCTTGCTCACAATCCTTTTAAATATAAGTGCCCCACGAGGTATGCAATGTATAGTATTGACCCACAGACACCAGACAAACTGAACTTTTAGTTACAGTTATTAACTATTACCAGTACTTGAAATGTAATATTTCGCTTCCTCTTCAAAGTGAATGATAGTTACAATATTTGCACTGAAAAGTTGCGTGATTAGTTCAAAAAGAAAGAAACTGCCATtggaaaacaaatatttttataGAAAGCAAATTGAGTTCTGTTCAAATGTATCATACCTAATCATGGAACCAAAGAGGCCAAGATTATTTTTTTTGCTATTATAAGAGGCTATGGTATTATTTTGCAAAATACTTTGTGACCAGATAAGAGGCCTAAAACACTGCATCAGGGTACAATATTATGGATTCCATTTTCagttatttttttctattttgtatAGACAAATATTTTTTCATCGACTTAAATACTCTTAGGTTTTCTAGTTCAGTTCTTGTTCCAGAATCATTTAGAAAAAAACACGTAATCTCTGTACAGCTGATGTAAGATATAAATATGatttaaaaatattttgttcTTTGTaattgttgaaaaataaatgtctTATTCTGAATTA
>TU1751475
TGGACATTGACTTTCTGGAGACGGTGAAAAGGCATATCTTGAGCAGGTTACAGATGAGGGTAAGACCCAACATCACCCATCCTATCCCGAAGGCGGCGATGGTGACTGCGCTTCGGAAACTACACGCGGGTAAAGTGCGCGAGGATGGGAGAGTAGAAATCCCGAATCTGGATGGACACGCGACCAGCAATGCCAATGACGTGCTGGAGGAAAGCTCGGAGATAATCAGTTTCGCAGAGACAGGTGTGTAATTATTGTATATTACAGGCAAGCTACCGTTTACTCTATTGTATTAGGAAAAAAATGAACAAATAAAACCACTTTTACGCAAAGACCAAGCTGGGTATGGTGCCTAAGGTTTGGACTAAACATTAGACCAAGGTGATGTA

Function

NR:

description
inhibin beta B chain-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571398.2 False 3743 mRNA 0.42 2 24453230 24465553
TU1751475 True 389 lncRNA 0.46 1 24464075 24464463

Neighbor

gene id symbol gene type direction distance location
LOC110497104 LOC106574262 coding downstream 81798 24279738 ~ 24371432 (-)
LOC118941245 NA coding downstream 226831 24226270 ~ 24226399 (-)
LOC110495883 LOC106575186 coding downstream 243775 24207344 ~ 24209455 (-)
LOC110495882 LOC106574255 coding downstream 277247 24167580 ~ 24175983 (-)
LOC110495873 LOC106575174 coding downstream 380871 24043236 ~ 24072359 (-)
LOC110495885 LOC106575192 coding upstream 12762 24478315 ~ 24519903 (-)
LOC110495891 pnpla4 coding upstream 155124 24620677 ~ 24629312 (-)
LOC110495893 LOC106574268 coding upstream 397420 24785889 ~ 24939922 (-)
LOC110496921 hdd1a coding upstream 522188 24987741 ~ 25004133 (-)
LOC110495898 cd99 coding upstream 713810 25179363 ~ 25196343 (-)
G1529624 NA non-coding downstream 52456 24400560 ~ 24400774 (-)
G1529621 NA non-coding downstream 55486 24397537 ~ 24397744 (-)
G1529620 NA non-coding downstream 55755 24397238 ~ 24397475 (-)
G1529618 NA non-coding downstream 56358 24396635 ~ 24396872 (-)
G1529577 NA non-coding downstream 97632 24355089 ~ 24355598 (-)
G1529795 NA non-coding upstream 3596 24469149 ~ 24469443 (-)
G1529811 NA non-coding upstream 58102 24523655 ~ 24525604 (-)
G1529813 NA non-coding upstream 64407 24529960 ~ 24530315 (-)
G1529814 NA non-coding upstream 65206 24530759 ~ 24531006 (-)
G1529815 NA non-coding upstream 73365 24538918 ~ 24539352 (-)
G1529613 NA other downstream 59546 24393375 ~ 24393684 (-)
LOC110495852 LOC106574460 other downstream 909737 23542411 ~ 23543631 (-)
LOC110495851 LOC106574449 other downstream 911974 23479558 ~ 23541681 (-)
LOC110495841 LOC106574435 other downstream 1284639 23008547 ~ 23168591 (-)
G1530967 LOC106574270 other upstream 684515 25150068 ~ 25150994 (-)
G1531142 NA other upstream 1053868 25519421 ~ 25523180 (-)
LOC110495915 NA other upstream 1107885 25571910 ~ 25574981 (-)
G1531236 NA other upstream 1230986 25696539 ~ 25708874 (-)
G1533378 NA other upstream 2722069 27187622 ~ 27189549 (-)
G1529791 NA non-coding downstream 1214 24462618 ~ 24462861 (-)

Expression


Co-expression Network