LOC118941069


Basic Information

Item Value
gene id LOC118941069
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 24465538 ~ 24472111 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951425.1
ATGCATAGGCTTAAGGCCAGCTCTCCACCTGCCTTCCAGGCCACCTCTCCACCTGCCTTCCAGGCCACCTCTCCACCTGCCTTCCAGGCCACCTCTCCACCTGCCTTCCAGGCCACCTCTCCACCTGCCTTCCAGGCCACCTCTCCACCTGCCTTCCAGGCCACCTCTCCACCTGCCTtccaggccacctctccagctgACTGCCAGGCCACCTCTCCAACTGCTTTCCAGTTCATCTCTCCAACTGCTTTCCAGTTCATCTCTCCAACTGCTTTCCAGTTCATCTCTCCAACTGCTTTCCAGGCCAGCTCTCCAACTGACCATATCTATCCAagccacctctccagctgccttccCGGCTACCTCTCCAACTGCCTTCCCACCCACCTATCCAGCTACCTTCCAGGACACCTCTACTACTGCCTTCCAGGCCCCTCTCCAACTGCCTCCCAGGCCACCCCTCCAGATGCCTCCCAGGCCTGCTCTCCACCTGCCTtccaggccacctctccagctgACTTCCAGGCCACCTCTCCGGCTGACTGCCAGGCCACCTCTCCGGCTGACTGCCAGGCCACCTCTCCGGCTGACTGCCAGGCCACCTCTCCGGCTGACTGCCAGGCCACCTCTCCGGCTGACTGCCAGgccacctctccagctgccttccAGGCCACCTCTCCTACTGCCTTCCAGGctacctctccagctgcctcccaGTTCAACTTTCCAACTGCCTTCCAGGTCATCTCTCCAGCTGCCTCCCAGGTCCTCTCTCCAGCTGCCTCCCAGGtcacctctccagctgcctcccaggtcacctctccagctgcctcccaGTTCATCTCTCCAGCTGCCTCCCAGTtcacctctccagctgcctcccaGTTCAACTTTCCAACTGCCTTCCAGGCCAGCTCTCCAGCTGCCTTCCAGGAATGTGACTTTGCACCCTCACTTATCACTGGTCGTCCTGCTCCAGCTGACACACTGGTCTTGCCAGCTGACTTCCAGCTCACCTCTCCAACTGTCTTCCAAGCCACCTCTCCAACTGTCTTCCAGGCCACCTCTCCAACTGTCTTCCAGGCCACCTCTCCAACTGTCTTCCAGGCCACCTCTCCAACTGTCTTCCAGGCCACCTCTCCAACTGTCTTCCAGGCCACCTCTCCAACTGCCTTCCAGGCCACCTCTCCAACTGCCTTCCAGGCCACTTCTCCAACTGCCTTCCAGGCCACCTCTCCAACTGCCTTCCAGGCCAACTCTCCAACTGCCTTCCAGGCCACCTCTCCACCTGCCTCCCAGGTCTCTTCTACAGCTTATTTCCAGGCCATCTCTCCAACTTCCATCCATGCCCCCTTTCCAGCTGCCTTGCAGGCCACCTCTCCAACTGCCTTCCAGGCCACCTCTCCAACTGCCTTCCAGGCCACCTCTCCAACTGCCTTCCAGGCCACTTCTCCAACTGCCTTCCAGGCCACTTCTCCAACTGCCTTCCAGGCCACAGCTCCAACTGCCTTCCAGGCCACCTCTCCAACTGCCTTCCAGGCCACTTCTCCAACTGCCTTCCAGGCCACTTCTCCAACTGCCTTCCAGGCCACCTCTCCAACTGCCTTCCAGGCCACCTCTCCAACTGCCTTCCAGGCCACCTCTCCAGTCACCTCACAGGAAAACTCCCCACATTTATTcaacgtcgccatgacatcgcctacaagtgtgatcggAGAGAAGCCGTCTTAG
>TU1751331
CGTCAAAACAGGTGCCACAACACCCACCGATGTACTGGCTGGGTTCAGGTGCACTGGCATTTGGCCATACAACCCTGATATATTTCAGGAATGTGACTTTGCACCCTCACTTGTCACTGATAGAACTGCTCCAGCTGACAAGTTGGTCTTGCCAGCTGCCTCCCAGGTCATCTCTTCAGAGACTTCTCAGGCTACTGTGCCCACTGTACCCACAGC

Function

NR:

description
uncharacterized protein LOC105941254

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951425.1 False 1731 mRNA 0.60 6 24465538 24472111
TU1751331 True 216 lncRNA 0.52 1 24469003 24469218

Neighbor

gene id symbol gene type direction distance location
LOC110495884 LOC106574260 coding upstream 202432 24222829 ~ 24263106 (+)
LOC100653456 LOC106574258 coding upstream 244439 24210985 ~ 24221099 (+)
LOC110497103 LOC106574257 coding upstream 263924 24199574 ~ 24201614 (+)
shroom2b NA coding upstream 266108 24176311 ~ 24199430 (+)
LOC110495878 LOC106574254 coding upstream 297943 24153245 ~ 24167595 (+)
LOC110495887 LOC108430494 coding downstream 48586 24520697 ~ 24525649 (+)
LOC110495890 LOC106574267 coding downstream 84126 24556237 ~ 24574771 (+)
LOC110495892 sts coding downstream 142132 24614243 ~ 24626367 (+)
LOC110495894 LOC106574269 coding downstream 603589 25075700 ~ 25097350 (+)
LOC110495895 LOC106574270 coding downstream 661099 25133210 ~ 25157338 (+)
G1529657 LOC106574263 non-coding upstream 998 24464075 ~ 24464540 (+)
G1529612 NA non-coding upstream 72892 24392403 ~ 24392646 (+)
G1529598 NA non-coding upstream 84870 24380449 ~ 24380668 (+)
G1529596 NA non-coding upstream 87595 24377719 ~ 24377943 (+)
G1529593 NA non-coding upstream 88203 24377116 ~ 24377335 (+)
G1529700 NA non-coding downstream 66818 24538929 ~ 24539269 (+)
G1529693 NA non-coding downstream 68752 24540863 ~ 24541985 (+)
G1529960 NA non-coding downstream 233335 24705446 ~ 24705846 (+)
G1530012 NA non-coding downstream 279545 24751656 ~ 24751945 (+)
G1528194 NA other upstream 1304247 23158833 ~ 23161291 (+)
LOC110497098 LOC106574424 other upstream 1854086 22599016 ~ 22641368 (+)
G1525320 NA other upstream 3708126 20756691 ~ 20757412 (+)
G1524181 LOC106574559 other upstream 3981825 20473360 ~ 20483713 (+)
G1524124 LOC106574554 other upstream 4158634 20305705 ~ 20306904 (+)
G1530367 NA other downstream 532650 25004761 ~ 25005609 (+)
G1530785 NA other downstream 1094360 25566471 ~ 25571346 (+)
G1530923 LOC106574292 other downstream 1366395 25838506 ~ 25840353 (+)
LOC110495888 ralbb coding downstream 2881 24472099 ~ 24477037 (+)

Expression


Co-expression Network