LOC110495891 (pnpla4)


Basic Information

Item Value
gene id LOC110495891
gene name pnpla4
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 24620677 ~ 24629312 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571403.2
AAACACAAACCAGACCATGTATCCCAATGTTTTCTTACAGGTTTAGTCAATTTCAACGGATAGTTTTGTAAATCGTTgtaggcttttattttgaaacagCGCGGAAAACCCGGAAGTAAAGCACGGATCTAGCACTCCTTTACATTGTTATCGTATTTGCAAAGCGGTGCAGAATAAGCAGTTTTAGTTTACTGCAATTGTTTCTAAAACCGTAATCCCACCATAAACGAGATGACAGTGCCAGTGGTGAACCTTTCTTTTGCTGCGTGTGGATTCCTGGGTATCTACCAACTGGGCGCATGTGGAGCCATCCTGAGACATGGAGACAAGCTGGTGAGCTCTCTCAGGGCATGTGCCGGGGCATCTGCTGGAGCTCTGGTGGCTGCAGTGATGGTCACTGCTCCAGACAAACTACAGAGTGTCAAAGAATTTACCTTCAGATTTGCAAAAGATGTCAGAAGCCAGAGGTTTGGAGCTGTGACACCTGGATATAACTTCATGCTTACACTCAGGGAGGGAATCGAGGAGTTTCTGCCTGGCGATGCCCACATTAAAGCAGGCAATCACCTTCACATCTCTATAACACATTCAAAAAGTGGCAAGAACACCGTCGTGTCCAGCTTTGCCTCCAGGGAGGACCTCATAAAGGCACTCTTGGCCAGTAGTTTTGTGCCCGTCTATGCTGGAATCAAACCGGTGGAATGGCAAGGACAGAAATGGATTGACGGGGGATTCACGGATAGTCTCCCCATCCTGCCAGAGGGACGTACCATCACAGTCTCCCCCTTCGCAGGTCCCCAAGACATCTGCCCAAAACACAGAGGGCTCATGAACCTCCACCTCAAACTGGCCAACATGGACGTAATGTTTTCCAAGGAGAACATCATCAGGTTAAACCAGTCCTTATTCCCTCCGTTAGAGGAAAGGATGAACCAGTATTGTAAAGAGGGTCATGACGATGCAGTGAGGTTTCTGAAGAACGAAAACTGGATCCAGTAGTGTTGTATTTCAGTAACATCCCAGTCCAATGGAGCAGTCCTGGAACTTGGATCCTTCCCCTCCCAGTTGGTGGATTTCCCTACTGCTCAGAGACAGATCGAAGCACTTTCTGAGGACTGAGAATATGGGAAGTCCTTTATCACTCGACTGAAATATAAGGCTTACCAGAACCTTTCATGGAAACGCCTCGTCTCTTATGCATGAGGACATTTAGATAATCTGAGCAATTTATCTAGTAATCTACTATTCTATTCGATACGTTGACTGGTTCTGACTTCCCATTTGCATTCCTATAAATATACCCTACTAAACCACCGCAGATGCAAACTAAAGCCTCTCTGCACCTGCACTTTTTAGGTTGAGTATTTTTACTCCTATAAAAAAAAAGTAACCTATtaacaaaaaatattgttttaaCCGAAAATGTGACATCTGGCTGTTCGGCCTCTGTTGACCTGTTCTTCTGAAGCTGTATCAGACCGTACCTTTCT
>XM_036952402.1
CACAAACCAGACCATGTATCCCAATGTTTTCTTACAGGTTTAGTCAATTTCAACGGATAGTTTTGTAAATCGTTgtaggcttttattttgaaacagCGCGGAAAACCCGGAAGTAAAGCACGGATCTAGCACTCCTTTACATTGTTATCGTATTTGCAAAGCGGTGCAGAATAAGCAGTTTTAGTTTACTGCAATTGTTTCTAAAACCGTAATCCCACCATAAACGAGATGACAGTGCCAGTGGTGAACCTTTCTTTTGCTGCGTGTGGATTCCTGGGTATCTACCAACTGGGCGCATGTGGAGCCATCCTGAGACATGGAGACAAGCTGGTGAGCTCTCTCAGGGCATGTGCCGGGGCATCTGCTGGAGCTCTGGTGGCTGCAGTGATGGTCACTGCTCCAGACAAACTACAGAGTGTCAAAGAATTTACCTTCAGATTTGCAAAAGATGTCAGAAGCCAGAGGTTTGGAGCTGTGACACCTGGATATAACTTCATGCTTACACTCAGGGAGGGAATCGAGGAGTTTCTGCCTGGCGATGCCCACATTAAAGCAGGCAATCACCTTCACATCTCTATAACACATTCAAAAAGTGGCAAGAACACCGTCGTGTCCAGCTTTGCCTCCAGGGAGGACCTCATAAAGGCACTCTTGGCCAGTAGTTTTGTGCCCGTCTATGCTGGAATCAAACCGGTGGAATGGCAAGGACAGAAATGGATTGACGGGGGATTCACGGATAGTCTCCCCATCCTGCCAGAGGGACGTACCATCACAGTCTCCCCCTTCGCAGGTCCCCAAGACATCTGCCCAAAACACAGAGGGCTCATGAACCTCCACCTCAAACTGGCCAACATGGACGTAATGTTTTCCAAGGAGAACATCATCAGGTTAAACCAGTCCTTATTCCCTCCGTTAGAGGAAAGGATGAACCAGTATTGTAAAGAGGGTCATGACGATGCAGTGAGGTTTCTGAAGAACGAAAACTGGATCCAGTAGTGTTGTATTTCAGTTGAGTATTCTTTTTATACTCAACTGAAATAAACTGGTTTTTTCTTGTAAATATGGTGTAAtcacattatttattttagattttaaagtgtgtaaaataaagaaaatacaaTAATTCAA

Function

symbol description
pnpla4 Predicted to enable triglyceride lipase activity. Predicted to be involved in lipid homeostasis and triglyceride catabolic process. Predicted to act upstream of or within lipid catabolic process. Predicted to be active in cytoplasm; lipid droplet; and membrane. Orthologous to human PNPLA4 (patatin like phospholipase domain containing 4).

NR:

description
patatin-like phospholipase domain-containing protein 4

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K11157 PNPLA4; patatin-like phospholipase domain-containing protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571403.2 False 1490 mRNA 0.45 8 24620677 24629312
XM_036952402.1 True 1128 mRNA 0.45 7 24626413 24629309

Neighbor

gene id symbol gene type direction distance location
LOC110495885 LOC106575192 coding downstream 100774 24478315 ~ 24519903 (-)
LOC110495886 LOC106575190 coding downstream 155124 24453230 ~ 24465553 (-)
LOC110497104 LOC106574262 coding downstream 249245 24279738 ~ 24371432 (-)
LOC118941245 NA coding downstream 394278 24226270 ~ 24226399 (-)
LOC110495883 LOC106575186 coding downstream 411222 24207344 ~ 24209455 (-)
LOC110495893 LOC106574268 coding upstream 233661 24785889 ~ 24939922 (-)
LOC110496921 hdd1a coding upstream 358429 24987741 ~ 25004133 (-)
LOC110495898 cd99 coding upstream 550051 25179363 ~ 25196343 (-)
LOC110495901 LOC106574277 coding upstream 630348 25257000 ~ 25263674 (-)
LOC110495903 LOC106574275 coding upstream 643252 25272564 ~ 25278945 (-)
G1529833 NA non-coding downstream 34556 24573800 ~ 24586121 (-)
G1529815 NA non-coding downstream 81325 24538918 ~ 24539352 (-)
G1529814 NA non-coding downstream 89671 24530759 ~ 24531006 (-)
G1529813 NA non-coding downstream 90362 24529960 ~ 24530315 (-)
G1529811 NA non-coding downstream 95073 24523655 ~ 24525604 (-)
G1529889 NA non-coding upstream 15872 24645184 ~ 24645443 (-)
G1529945 NA non-coding upstream 63737 24693049 ~ 24693296 (-)
G1529961 NA non-coding upstream 76328 24705640 ~ 24705844 (-)
G1529972 NA non-coding upstream 85227 24714539 ~ 24716614 (-)
G1530029 NA non-coding upstream 131467 24760779 ~ 24761085 (-)
G1529613 NA other downstream 226993 24393375 ~ 24393684 (-)
LOC110495852 LOC106574460 other downstream 1077184 23542411 ~ 23543631 (-)
LOC110495851 LOC106574449 other downstream 1079421 23479558 ~ 23541681 (-)
LOC110495841 LOC106574435 other downstream 1452086 23008547 ~ 23168591 (-)
G1530967 LOC106574270 other upstream 520756 25150068 ~ 25150994 (-)
G1531142 NA other upstream 890109 25519421 ~ 25523180 (-)
LOC110495915 NA other upstream 944126 25571910 ~ 25574981 (-)
G1531236 NA other upstream 1067227 25696539 ~ 25708874 (-)
G1533378 NA other upstream 2558310 27187622 ~ 27189549 (-)

Expression


Co-expression Network