LOC110496921 (hdd1a)


Basic Information

Item Value
gene id LOC110496921
gene name hdd1a
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 24987741 ~ 25004133 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110496921
ACACAATCGAATTTTAAACCGGTGACCCACGTTCTTTTCGACATGGATGGATTATTATTAGATACAGAGAGGCTGTACACGGTGTCATACCAGAGAGTACGCAACCGGTTTGGAAAGAAATACACCTGGGATGTGAATGGGTAAGAAAGCTATGGAGGCTTCCACCATTATATGAGACTCCCTAGAACTACCAATGACACCAGAGGAACTTCTCAGTGAGACTAGAAAAATACAGGAGAGGATACTTCCTTCAGCTCAAATGATGCAAAGAGTGGAGAAGCTCATCCACCATCTCTGTAAACACAAGGTGCCCATCGCCATAGTGACAAGCTCAGCAGGCCTGACGTTTGAGATGAAGACCAGTCATCACAAAGCCTTTTTTGACTTGTTCAGCCACATCATCCTTGGGGATGACCCCAATGTGAAAAACAGCTAACCTCAGCCTGACTCCTTCTTGGTGTGTGCCAACAGGTTCACTCCTCCTGTCACCTGCTTGTCTTGTTTCCTGGTGTTTGAGGATGCTCCTATAGGTGTTAAGGCCGGCCTAGCGGCTGTGATGCAGGTGGTAATGATCCCTGATGACAAACTGGACCGAGGCCTTACCCAGGAGGTCACACTGGTCCTGAGGACCATGGAGGACTTCAAACCAGAGATGTTCAGCCTGCCGGCCTATGACTGA

Function

NR:

description
pseudouridine-5'-phosphatase-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016787 hydrolase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110496921 True 679 mRNA 0.48 4 24987741 25004133

Neighbor

gene id symbol gene type direction distance location
LOC110495893 LOC106574268 coding downstream 47819 24785889 ~ 24939922 (-)
LOC110495891 pnpla4 coding downstream 358429 24620677 ~ 24629312 (-)
LOC110495885 LOC106575192 coding downstream 467838 24478315 ~ 24519903 (-)
LOC110495886 LOC106575190 coding downstream 522188 24453230 ~ 24465553 (-)
LOC110497104 LOC106574262 coding downstream 616309 24279738 ~ 24371432 (-)
LOC110495898 cd99 coding upstream 175230 25179363 ~ 25196343 (-)
LOC110495901 LOC106574277 coding upstream 255527 25257000 ~ 25263674 (-)
LOC110495903 LOC106574275 coding upstream 268431 25272564 ~ 25278945 (-)
LOC110495905 LOC106574279 coding upstream 279822 25283955 ~ 25343499 (-)
LOC110495906 LOC106574280 coding upstream 344731 25348864 ~ 25377536 (-)
G1530040 NA non-coding downstream 217653 24769887 ~ 24770088 (-)
G1530030 NA non-coding downstream 226002 24761469 ~ 24761739 (-)
G1530029 NA non-coding downstream 226656 24760779 ~ 24761085 (-)
G1529972 NA non-coding downstream 271127 24714539 ~ 24716614 (-)
G1530373 NA non-coding upstream 4013 25008146 ~ 25008365 (-)
G1530460 NA non-coding upstream 17790 25021923 ~ 25022161 (-)
G1530474 NA non-coding upstream 37836 25041969 ~ 25042216 (-)
G1530475 NA non-coding upstream 39187 25043320 ~ 25043522 (-)
G1530495 NA non-coding upstream 62296 25066429 ~ 25066642 (-)
G1529613 NA other downstream 594057 24393375 ~ 24393684 (-)
LOC110495852 LOC106574460 other downstream 1444248 23542411 ~ 23543631 (-)
LOC110495851 LOC106574449 other downstream 1446485 23479558 ~ 23541681 (-)
LOC110495841 LOC106574435 other downstream 1819150 23008547 ~ 23168591 (-)
G1530967 LOC106574270 other upstream 145935 25150068 ~ 25150994 (-)
G1531142 NA other upstream 515288 25519421 ~ 25523180 (-)
LOC110495915 NA other upstream 569305 25571910 ~ 25574981 (-)
G1531236 NA other upstream 692406 25696539 ~ 25708874 (-)
G1533378 NA other upstream 2183489 27187622 ~ 27189549 (-)

Expression


Co-expression Network