LOC110495894 (LOC106574269)


Basic Information

Item Value
gene id LOC110495894
gene name LOC106574269
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 25075700 ~ 25097350 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571408.2
AATTTTGAGAGTTGGTCATTTCCTTTGAAAATTGAGAAGGCAGTGAGGCACTCCACTAGTCACTCTCCACTCCACACTCAGCATCTCATCCCCACCGCAGTCCATGAGCACAGGGACCTTTGGCAGGGTGTTCCTGGTGAAAGACAAGAAGAGCAGGGCGTTCTACGCTCTAAAGGCTATGAAGATCCCTGACGTGATCCGGCTCAAGCAGGAGCAGCACGTCCACAACGAGAAGGAAGTCCTGACCGAAGTCAACCACCCCTTCCTCATCAGACTGTTCTGGACCCACCACGACGATCGTTTACTCTACATGCTGATGGACTACGTTCCAGGCGGGGAGCTGTTCAGTTACCTCCGTAGCCGCGGGCGCTTCAGCAACACCACGGGCCTCTTCTACTCCACGGAGATTGTGTGTGCCATCGAGTACCTCCACTCCAAAGAGATCGTCTACCGAGACCTGAAGCCGGAGAATATACTGCTGGACAGCGAGGGACACATCCGCCTCACGGACTTCGGCTTCGCTAAGAAGCTCTCGGACAGGACGTGGACTCTGTGTGGAACCCCGGAGTACCTGGCCCCAGAGGTCATCCAGAGCAAAGGTCATGGCCGGGCGGTGGACTGGTGGGCCCTGGGGATCCTCATCTTTGAGATGCTGGCTGGGTACCCACCGTTTTTTGACGACAATCCTTTTGGTATTTATCAGAAGATCCTCGCCGGAAAGCTGGAATTCCCGCGGCATCTGGATTTCTATGTAAAAGATCTCATCAAGAAGTTCCTCGTCATTGACCGAGCCAGGAGGTTAGGCAATATGAAGAACGGAGCAGACGATGTGAAAAAGCACAGATGGTTCAAGTCTATAGACTGGGATGGTGTACCTCTGAGAAAACTGAAGCCACCCATAGTTCCCAAGGTGTCCCACGAAGGTGACACGTCTAACTTTGATGCCTACCCCGAGGAAGAGTGGAAGAAAGATGCACCTGTGCCAGCAAAGGATTTAGAAATCTTCAAGAacttctaaaaaataaaaaataaatttaaaaggCGGAAGTAACGACAGAAATACTTCGAGAACATATAGGTCTTGTAGAGAAAGACTCGAGAACGTTTAGATCTTGGAAAAGGTGAGTCAAACTTCTAGatgttgaaaaaaatatatatagaaagaCTTCTGGATCTTGCTGAATAACAGAAGGACTGGTAAATCATCTGAGATATCACCATTGTATGGTCAGCAAGATAACTTCTAAGCTTCCAAGTCCCAGAACTTTATCTTGCTTGAAGACATTGAAGTGGTCCACATAGGGTGGAAGAGCAGGAGAGAATTTACCTAAAAATAACTAAAAGCGTCATCATATCACCACACTATTTATCTATCAttaatttatttttgtttgaaAAAGTTATTTTCCACTTAACTAAAACCTCAATCCTCAGTCCTCAGTTTCTTTGTTTCTCTGAGCCTTCTCCTGTTATGCAACAATAAAATGATGGTCCTCTTTGAACCAAAGGACATTGTTACTGAAATGAATATGTTTAAAATGCAATAATCAGGAATTTTTATATTTTGTTGGGCCAAGAAGGTTCCAGTTTTCTTTGTTGGAACTTGTGGGACTCAACCAACCGAGCAAAGCTTATGATCCAAAAATGATCACGCATACAGTAGACTCAGTATTGAGCTGTACAGTAAATGGAATTTACATGTGTGGTTACTACATCCTTACTTAGTAGATTGTACTGGATATTTGTCAATGAGAAAGTAGCAAACTTGTACAGGAACATACTACAATATCATGCCAAGCAAGCTTTGTAATATCATTTTATTGACTGGCCGCTAGTCAAATAGGCTGTTAAACTTGTCATTTTGAGCTGTAAGTACTTGGCTATCTATCGGCCAGTGCATGTGTGCATCAAGGCCAGACCAGAAAGCACTTGTAAAAGGTGCCTTTGGatgtgacatactgtatgtcttcTTCTTTTCTCCTGACAAGCGAGTGGTACTTTTTCCAACTTTATTTATATCACACACACTGTTTATACTTGTGCTGTTGAAAACGTTGACTGTTAATAATGATATACGTGGAATAATTGTTGTGTGGAAGAAGTGTAGCTAGCTGCTATATGTGGAATTGGGTTTTCTCCCATCTTTTTCTTCCCTCCACTTTGTTCTATTTTGCTGTTCACTCAATAACAAGAAATGTCCCTGTATATTGACTGGTATGTCTATCTTTCTCTAGGTCTCTGTCACGTACTATAAAGAACTGTAGAATACATCTCCAGCTGGTTTCATGTATAGCCAAGCAGGAAGTTGGCTTCAGGCAGCCAATAAACTTTTGTCTTCTCTCCACCAATCATATCACTGGCCAGTAGAAAGCACGTCATGACTAGGATGCATCATAGTACAATCACAAACTGTCTCTCACACTTACTTAGTAACACTTAAGTCATTTGTGTCCCTTTTTAGTAAACTTAAATTATTTGAATTGAACAATTTGATTGCTTGTATATAATGTTTTATGTAGTTTTCTTAACCAATTATGAAACAATACTCAGTGTGAGTTTACACCAAACGGACCGAATAATTAGGACTTTTGGTCAATGCGTGCATTGTTTCTTTGCATCTTTTTGTTGTGTATCTTAGGGAATTTGCTTTACAATCCTCAGCCTTTTGCCTTTTTTTAAGATGTTTATGTATTAGCAAAAAGAAAACGAATATGAAAgaagaaatactgtacttttagGTCAATACAAGCAAATGATATTTTATACCCAATACCATTTTACCAATGCCTTTTGTCAAAgtgtatagatttttttttattattatttaacagCCTACCTTACAAACTTTGTATGGCCTTTTCATATTGTTAATGTTGCAGTACTGTATTTAACTTCTTGAGATACTGTTTAAAAGATCCACACAACCAGGATTAAAAACACCTCCTATCCATTGACTCAA
>XR_002469486.2
TGTCAACACAAAGCATCCCCACTTCTCCCTtgccctgtctgtgtgttgttgaacTGGGTGAGGTTCTACTTGCGAACGAAGGAGAGAAGTAAATTATTTAAATGTCTCATGTCTTTCTTGTTAGTCAACTAGCTTCCTAAGACGGAAGTTAAGCTAGCGAGACAACACGAGACCCCCTAACTACTCAAGCGGAGGCTCGTACGGAAACGGGCAGTATGAGTTTGTAGTttgacattagctagctaacgttggtcATTCATTCAGATGCGAGGTGTGGGATGGTTTTCTTTTGTGTTTAGCTATATATAGCCTGATAGCTACTCCGTTTGCTATGGCTAGCTAGCTTCTGCATTTGACAGCAGTGACCGCTCGAGCTACATCATGCGATTCCGCATGGATATGATCGTCACCTATTTTCCAGCAATCAAGACAAATAAGATGCTCGCTTGTCCAAGGGAAGTAGCCACATTTGATTTAAAACCGTAGTTGGTATTAGGGAATAAGGCGGACACTAATATTGAGAATTGGCTACTGTAGCCGTCATTGGCTATCTATCCTCGGCGAAACCGGTTTGGTAAAGTGGCTAAAGTGATTGCTAGCATAGCTACATTTGGATGCATACGGAAAATGGCATCAACAAAGGCAAAGGTTGGGATAATTAATGAAAGCAACTCCATTCGCGAGAGTGCCAAGACCTGCGCGAGCAGTCCCATGTTGTTGGCCGGAGGAGCATCGTTAACATTGAACAACAGGACATACTCACTCGATGACCTGGACACCATTTCCACAGTTGGCACAGGGACCTTTGGCAGGGTGTTCCTGGTGAAAGACAAGAAGAGCAGGGCGTTCTACGCTCTAAAGGCTATGAAGATCCCTGACGTGATCCGGCTCAAGCAGGAGCAGCACGTCCACAACGAGAAGGAAGTCCTGACCGAAGTCAACCACCCCTTCCTCATCAGACTGTTCTGGACCCACCACGACGATCGTTTACTCTACATGCTGATGGACTACGTTCCAGGCGGGGAGCTGTTCAGTTACCTCCGTAGCCGCGGGCGCTTCAGCAACACCACGGGCCTCTTCTACTCCACGGAGATTGTGTGTGCCATCGAGTACCTCCACTCCAAAGAGATCGTCTACCGAGACCTGAAGCCGGAGAATATACTGCTGGACAGCGAGGGACACATCCGCCTCACGGACTTCGGCTTCGCTAAGAAGCTCTCGGACAGGACGTGGACTCTGTGTGGAACCCCGGAGTACCTGGCCCCAGAGGTCATCCAGAGCAAAGGTCATGGCCGGGCGGTGGACTGGTGGGCCCTGGGGATCCTCATCTTTGAGATGCTGGCTGGGTACCCACCGTTTTTTGACGACAATCCTTTTGGTATTTATCAGAAGATCCTCGCCGGAAAGCTGGAATTCCCGCGGCATCTGGATTTCTATGTAAAAGATCTCATCAAGAAGTTCCTCGTCATTGACCGAGCCAGGAGGTTAGGCAATATGAAGACTTCTAGTCCCTGTAGTCCACCGCCATTTTATGATTCATTCATTGGAATCGTGCATGTGTCTGGCACTGACGTTCAATCGAAggatgatgtctgagtgttttgAATTACACCGTTCAAAGGCATGAGAGTCAATGGGGGAGTATATGAAGGCTCTTTTCAATAAAACAACTGTTGAACGGAGCAGACGATGTGAAAAAGCACAGATGGTTCAAGTCTATAGACTGGGATGGTGTACCTCTGAGAAAACTGAAGCCACCCATAGTTCCCAAG
>XM_021571407.2
AACACAAAGCATCCCCACTTCTCCCTtgccctgtctgtgtgttgttgaacTGGGTGAGGTTCTACTTGCGAACGAAGGAGAGAAGTAAATTATTTAAATGTCTCATGTCTTTCTTGTTAGTCAACTAGCTTCCTAAGACGGAAGTTAAGCTAGCGAGACAACACGAGACCCCCTAACTACTCAAGCGGAGGCTCGTACGGAAACGGGCAGTATGAGTTTGTAGTttgacattagctagctaacgttggtcATTCATTCAGATGCGAGGTGTGGGATGGTTTTCTTTTGTGTTTAGCTATATATAGCCTGATAGCTACTCCGTTTGCTATGGCTAGCTAGCTTCTGCATTTGACAGCAGTGACCGCTCGAGCTACATCATGCGATTCCGCATGGATATGATCGTCACCTATTTTCCAGCAATCAAGACAAATAAGATGCTCGCTTGTCCAAGGGAAGTAGCCACATTTGATTTAAAACCGTAGTTGGTATTAGGGAATAAGGCGGACACTAATATTGAGAATTGGCTACTGTAGCCGTCATTGGCTATCTATCCTCGGCGAAACCGGTTTGGTAAAGTGGCTAAAGTGATTGCTAGCATAGCTACATTTGGATGCATACGGAAAATGGCATCAACAAAGGCAAAGGTTGGGATAATTAATGAAAGCAACTCCATTCGCGAGAGTGCCAAGACCTGCGCGAGCAGTCCCATGTTGTTGGCCGGAGGAGCATCGTTAACATTGAACAACAGGACATACTCACTCGATGACCTGGACACCATTTCCACAGTTGGCACAGGGACCTTTGGCAGGGTGTTCCTGGTGAAAGACAAGAAGAGCAGGGCGTTCTACGCTCTAAAGGCTATGAAGATCCCTGACGTGATCCGGCTCAAGCAGGAGCAGCACGTCCACAACGAGAAGGAAGTCCTGACCGAAGTCAACCACCCCTTCCTCATCAGACTGTTCTGGACCCACCACGACGATCGTTTACTCTACATGCTGATGGACTACGTTCCAGGCGGGGAGCTGTTCAGTTACCTCCGTAGCCGCGGGCGCTTCAGCAACACCACGGGCCTCTTCTACTCCACGGAGATTGTGTGTGCCATCGAGTACCTCCACTCCAAAGAGATCGTCTACCGAGACCTGAAGCCGGAGAATATACTGCTGGACAGCGAGGGACACATCCGCCTCACGGACTTCGGCTTCGCTAAGAAGCTCTCGGACAGGACGTGGACTCTGTGTGGAACCCCGGAGTACCTGGCCCCAGAGGTCATCCAGAGCAAAGGTCATGGCCGGGCGGTGGACTGGTGGGCCCTGGGGATCCTCATCTTTGAGATGCTGGCTGGGTACCCACCGTTTTTTGACGACAATCCTTTTGGTATTTATCAGAAGATCCTCGCCGGAAAGCTGGAATTCCCGCGGCATCTGGATTTCTATGTAAAAGATCTCATCAAGAAGTTCCTCGTCATTGACCGAGCCAGGAGGTTAGGCAATATGAAGAACGGAGCAGACGATGTGAAAAAGCACAGATGGTTCAAGTCTATAGACTGGGATGGTGTACCTCTGAGAAAACTGAAGCCACCCATAGTTCCCAAGGTGTCCCACGAAGGTGACACGTCTAACTTTGATGCCTACCCCGAGGAAGAGTGGAAGAAAGATGCACCTGTGCCAGCAAAGGATTTAGAAATCTTCAAGAacttctaaaaaataaaaaataaatttaaaaggCGGAAGTAACGACAGAAATACTTCGAGAACATATAGGTCTTGTAGAGAAAGACTCGAGAACGTTTAGATCTTGGAAAAGGTGAGTCAAACTTCTAGatgttgaaaaaaatatatatagaaagaCTTCTGGATCTTGCTGAATAACAGAAGGACTGGTAAATCATCTGAGATATCACCATTGTATGGTCAGCAAGATAACTTCTAAGCTTCCAAGTCCCAGAACTTTATCTTGCTTGAAGACATTGAAGTGGTCCACATAGGGTGGAAGAGCAGGAGAGAATTTACCTAAAAATAACTAAAAGCGTCATCATATCACCACACTATTTATCTATCAttaatttatttttgtttgaaAAAGTTATTTTCCACTTAACTAAAACCTCAATCCTCAGTCCTCAGTTTCTTTGTTTCTCTGAGCCTTCTCCTGTTATGCAACAATAAAATGATGGTCCTCTTTGAACCAAAGGACATTGTTACTGAAATGAATATGTTTAAAATGCAATAATCAGGAATTTTTATATTTTGTTGGGCCAAGAAGGTTCCAGTTTTCTTTGTTGGAACTTGTGGGACTCAACCAACCGAGCAAAGCTTATGATCCAAAAATGATCACGCATACAGTAGACTCAGTATTGAGCTGTACAGTAAATGGAATTTACATGTGTGGTTACTACATCCTTACTTAGTAGATTGTACTGGATATTTGTCAATGAGAAAGTAGCAAACTTGTACAGGAACATACTACAATATCATGCCAAGCAAGCTTTGTAATATCATTTTATTGACTGGCCGCTAGTCAAATAGGCTGTTAAACTTGTCATTTTGAGCTGTAAGTACTTGGCTATCTATCGGCCAGTGCATGTGTGCATCAAGGCCAGACCAGAAAGCACTTGTAAAAGGTGCCTTTGGatgtgacatactgtatgtcttcTTCTTTTCTCCTGACAAGCGAGTGGTACTTTTTCCAACTTTATTTATATCACACACACTGTTTATACTTGTGCTGTTGAAAACGTTGACTGTTAATAATGATATACGTGGAATAATTGTTGTGTGGAAGAAGTGTAGCTAGCTGCTATATGTGGAATTGGGTTTTCTCCCATCTTTTTCTTCCCTCCACTTTGTTCTATTTTGCTGTTCACTCAATAACAAGAAATGTCCCTGTATATTGACTGGTATGTCTATCTTTCTCTAGGTCTCTGTCACGTACTATAAAGAACTGTAGAATACATCTCCAGCTGGTTTCATGTATAGCCAAGCAGGAAGTTGGCTTCAGGCAGCCAATAAACTTTTGTCTTCTCTCCACCAATCATATCACTGGCCAGTAGAAAGCACGTCATGACTAGGATGCATCATAGTACAATCACAAACTGTCTCTCACACTTACTTAGTAACACTTAAGTCATTTGTGTCCCTTTTTAGTAAACTTAAATTATTTGAATTGAACAATTTGATTGCTTGTATATAATGTTTTATGTAGTTTTCTTAACCAATTATGAAACAATACTCAGTGTGAGTTTACACCAAACGGACCGAATAATTAGGACTTTTGGTCAATGCGTGCATTGTTTCTTTGCATCTTTTTGTTGTGTATCTTAGGGAATTTGCTTTACAATCCTCAGCCTTTTGCCTTTTTTTAAGATGTTTATGTATTAGCAAAAAGAAAACGAATATGAAAgaagaaatactgtacttttagGTCAATACAAGCAAATGATATTTTATACCCAATACCATTTTACCAATGCCTTTTGTCAAAgtgtatagatttttttttattattatttaacagCCTACCTTACAAACTTTGTATGGCCTTTTCATATTGTTAATGTTGCAGTACTGTATTTAACTTCTTGAGATACTGTTTAAAAGATCCACACAACCAGGATTAAAAACACCTCCTATCCATTGACTCAA
>TU1752112
GGTTTGTACTCATCCACCTAAGATGGAAAGAACCTAAGGCgtgaaagaaaaaaacaacaacttgtaTTTATCTGTTTCAGACTTCTATGCATGTGTGCATCAAGGCCAGACCAGAAAGCACTTGTAAAAGGTGCCTTTGGatgtgacatactgtatgtcttcTTCTTTTCTCCTGACAAGCGAGTGGTACTTTTTCCAACTTTATTTATATCACACACACTGTTTATACTTGTGCTGTTGAAAACGTTGACTGTTAATAATGATATACGTGGAATAATTGTTGTGTGGAAGAAGTGTAGCTAGCTGCTATATGTGGAATTGGGTTTTCTCCCATCTTTTTCTTCCCTCCACTTTGTTCTATTTTGCTGTTCACTCAATAACAAGAAATGTCCCTGTATATTGACTGGTATGTCTATCTTTCTCTAGGTCTCTGTCACGTACTATAAAGAACTGTAGAATACATCTCCAGCTGGTTTCATGTATAGCCAAGCAGGAAGTTGGCTTCAGGCAGCCAATAAACTTTTGTCTTCTCTCCACCAATCATATCACTGGCCAGTAGAAAGCACGTCATGACTAGGATGCATCATAGTACAATCACAAACTGTCTCTCACACTTACTTAGTAACACTTAAGTCATTTGTGTCCCTTTTTAGTAAACTTAAATTATTTGAATTGAACAATTTGATTGCTTGTATATAATGTTTTATGTAGTTTTCTTAACCAATTATGAAACAATACTCAGTGTGAGTTTACACCAAACGGACCGAATAATTAGGACTTTTGGTCAATGCGTGCATTGTTTCTTTGCATCTTTTTGTTGTGTATCTTAGGGAATTTGCTTTACAATCCTCAGCCTTTTGCCTTTTTTTAAGATGTTTATGTATTAGCAAAAAGAAAACGAATATGAAAgaagaaatactgtacttttagGTCAATACAAGCAAATGATATTTTATACCCAATACCATTTTACCAATGCCTTTTGTCAAAgtgtatagatttttttttattattatttaacagCCTA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571408.2 False 2959 mRNA 0.41 8 25075700 25097350
XR_002469486.2 False 1772 mRNA 0.49 9 25076143 25095301
XM_021571407.2 False 3641 mRNA 0.42 8 25076147 25097350
TU1752112 True 1027 lncRNA 0.35 2 25094426 25097226

Neighbor

gene id symbol gene type direction distance location
LOC110495892 sts coding upstream 449333 24614243 ~ 24626367 (+)
LOC110495890 LOC106574267 coding upstream 500929 24556237 ~ 24574771 (+)
LOC110495887 LOC108430494 coding upstream 550051 24520697 ~ 24525649 (+)
LOC110495888 ralbb coding upstream 598663 24472099 ~ 24477037 (+)
LOC118941069 NA coding upstream 603589 24465538 ~ 24472111 (+)
LOC110495895 LOC106574270 coding downstream 35860 25133210 ~ 25157338 (+)
dhrsx LOC106574274 coding downstream 99894 25197244 ~ 25229821 (+)
LOC110495899 zbed1 coding downstream 107233 25204583 ~ 25208443 (+)
LOC110495902 LOC106574278 coding downstream 166645 25263995 ~ 25272511 (+)
LOC110495908 ftcd coding downstream 300576 25397926 ~ 25403564 (+)
G1530439 NA non-coding upstream 1761 25073726 ~ 25073939 (+)
G1530392 NA non-coding upstream 54544 25020859 ~ 25021156 (+)
G1530375 NA non-coding upstream 66238 25009228 ~ 25009462 (+)
G1530374 NA non-coding upstream 66489 25008948 ~ 25009211 (+)
G1530360 LOC100194703 non-coding upstream 74493 25000989 ~ 25001207 (+)
G1530573 LOC105030512 non-coding downstream 42041 25139391 ~ 25139723 (+)
G1530575 NA non-coding downstream 45568 25142918 ~ 25143118 (+)
G1530578 NA non-coding downstream 61723 25159073 ~ 25159277 (+)
G1530582 NA non-coding downstream 67777 25165127 ~ 25165416 (+)
G1530367 NA other upstream 70091 25004761 ~ 25005609 (+)
G1528194 NA other upstream 1914409 23158833 ~ 23161291 (+)
LOC110497098 LOC106574424 other upstream 2464248 22599016 ~ 22641368 (+)
G1525320 NA other upstream 4318288 20756691 ~ 20757412 (+)
G1530785 NA other downstream 469121 25566471 ~ 25571346 (+)
G1530923 LOC106574292 other downstream 741156 25838506 ~ 25840353 (+)
LOC110496782 LOC106575224 other downstream 836830 25930184 ~ 25943678 (+)
G1532307 NA other downstream 1660019 26757369 ~ 26757677 (+)

Expression


Co-expression Network