stat1-1 (stat1-1)


Basic Information

Item Value
gene id stat1-1
gene name stat1-1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 25410400 ~ 25427083 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124707.1
ATGGCCCAGTGGTGCCAGCTGCAACTACTGGAGTCTAAATACCTGGAGCAGGTCGACCAGCTCTACGATGACTCCTTCCCCATGGACATCAGACAGTACCTCAGCAAATGGATTGAGAGCATCGACTGGGAAAATGTGGCTGTTCAGGACTCCTTAGCAACAGTACGTTTCCATGACCTCCTAGCCCAGCTGGATGATCAACACAGCCGCTTCGCCCTGGAAAACAACTTCCTGCTACAACACAACATCCGCAAGATCAAGAGAAACCTCCAGGACCACTTTCAGGAGGACCCCGTTCACATGGCCATGATCATCTCCAGAAACCTGAAGGAGGAGCAGAAGATCCTGGCTGCTGCCAAAAGCATAGAGaccaacagagaaaacacacagactaGCATGGTTCTGGAGAAACAAAAactggacaacaaagtcaaagacATGAAAAACAAGGTTCAGGAAGCGGATCAGAATGTAAAGTCTCTGGAATACCTTCAAGATGAGCATGACTTTAAGGAAAATACTCTTAAGAACAGAGAACATGAAATGAACGGGCTGACACCGAAACAGCTGGAACACGAGAAGCTGCTGATTGCAGAGATGTGTTTGAAGCTGAAGATCAAGAGAGGGGAAGTGGTTGGCCAGTTGGCGGAGGTGCTCAACATGGCCGAGGCGGTCCAGTCAGACCTGATCTCAGAGGAGCTGGCGGAGTGGAAGAAGAGGCAGCAGATCTCCTGTATCGGAGGACCACCCAACGCATGTCTGGACCAACTGCAGAACTGGTTCACAGCGGTGGCGGAAAGCCTGCAGCAGGTGAGGCAGCAGCTGAAGGAGCTCCAGGAACTAGAGCAGAAGTACACATACGACAACGACCCAATCAAACAGCAGAAAGGCTTCCTGGAGGGGCGGGCCCTGACACTGTTCCGGAACCTCCTAGAACATTCCTTGGTGGTGGAGAGACAGCCCTGTATGCCCACACATCCACAGAGACCTCTGGTGCTGAAGACACAGGTGCAGTTCACTGTCAAGCTCCGATTTCTTGTGAAGCTCCAGGAATTCAATTATCAACTCAAAGTGAAAGCTTTGTTTGACAAGGACGTTACAGAAAAGAAAGGGTTTCGTAAGTTCAACATATTGGGCACCAACACAAAAGTTCTGAATATGGAGGAGTCAAATGGAAGCCTGGCTGCAGAGTTTCGCCATTTGCAACTGAAAGAGCAGAAAGTAGCCGGCAACAGAACAAATGAGGGGCCTCTCATTGTGACAGAGGAGCTGCACTGCATCTGCTTTGAGTCTGAACTCAACCAGTCAGGTCTGGAGCTCAAGCTAGAGACCATCTCCCTGCCCATCGTGGTCATCTCCAACGTCAGCCAGTTGCCCAGTGGCTGGGCCTCCATCCTGTGGTACAACATGCTGACCAGCGAACCCAAGAACCTGAAGTTCTTCCTGAGCCCTCCTGCAGCATCCTGGGGTCAGCTGTCTGAGGTGCTGAGCTGGCAGTTCTCCTCTGTCACCAAGAGGGGACTCAATGAAGAGCAGCTAGGCATGCTGGCCGACAAACTACTGGGCCAGAAAGCACAGAGGAATCCTGAGGGCCTTATCCCCTGGACCAAGTTCTGTAAGAGTCTCAATGAGAAGAGCTTTCCCTTCTGGCTGTGGATCGAAGCTATCCTGGACCTCATCAAGAGACACCTGCTGTCCCTGTGGAACGATGGTTGCATCCTGGGCTTTGTGagtaaggagagggagaaggcccTGCTGACTGGGAAGTGTCCAGGCACGTTCTTGCTGCGCTTCAGTGAGAGTAGCAGAGACGGAGCCATCACATTCACTTGGGTGGAACACGACCAATACAaTAAGCCTGTATTCCATGCAGTGGAGCCCTACACCAAGAAGGAACTGTCTGCCGTCTCTCTGCCTGACATCATCCGCACCTACAAGGTGATGGCAGCTGAGAACATCCCAGAGAACCCACTCCGCTTCCTCTACCCAGACATCCCCAAAGACAAGTCCTTCGGAAAGTACTACGCTAGGGCCTCAGAGGCATCGGAGCCCATGGATGTGGAGAGCTCCAGCAGCACAGGGTACATGAAGACAGAACTCATATCAGTGTCAGAAGTTCACCCATCTAGACTGCAAGACAACATGATGCCCATGTCGCCAGACGTGTTCGGAGAGCTGAAGAGGAGCGTTGCACCAGTGTTCCAGTGTTGGACTGGTCCTAAGGAAATTGATGCTGTG

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K11220 STAT1; signal transducer and activator of transcription 1

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124707.1 True 2238 mRNA 0.52 21 25410400 25427083

Neighbor

gene id symbol gene type direction distance location
LOC110495907 LOC106574282 coding downstream 15255 25392267 ~ 25395145 (-)
LOC110497105 LOC106574281 coding downstream 19036 25377735 ~ 25391364 (-)
LOC110495906 LOC106574280 coding downstream 32864 25348864 ~ 25377536 (-)
LOC110495905 LOC106574279 coding downstream 66901 25283955 ~ 25343499 (-)
LOC110495903 LOC106574275 coding downstream 131455 25272564 ~ 25278945 (-)
LOC110496923 LOC106575216 coding upstream 10840 25437923 ~ 25440347 (-)
LOC110495910 LOC106574285 coding upstream 26658 25453741 ~ 25474749 (-)
LOC110495911 LOC106574287 coding upstream 64435 25491518 ~ 25498651 (-)
LOC110495912 LOC106575218 coding upstream 77799 25504882 ~ 25530613 (-)
LOC110495916 ahr1 coding upstream 122980 25550063 ~ 25630757 (-)
G1531057 NA non-coding downstream 827 25407171 ~ 25409573 (-)
G1531050 NA non-coding downstream 74440 25333565 ~ 25335960 (-)
G1531039 NA non-coding downstream 127550 25282646 ~ 25282850 (-)
LOC110495901 LOC106574277 non-coding downstream 149997 25257000 ~ 25263674 (-)
G1531063 NA non-coding upstream 42542 25469625 ~ 25480582 (-)
G1531132 NA non-coding upstream 60737 25487820 ~ 25488050 (-)
G1531134 NA non-coding upstream 61613 25488696 ~ 25488908 (-)
G1531145 NA non-coding upstream 94313 25521396 ~ 25525185 (-)
G1530967 LOC106574270 other downstream 259406 25150068 ~ 25150994 (-)
G1529613 NA other downstream 1016716 24393375 ~ 24393684 (-)
LOC110497104 LOC106574262 other downstream 1126406 24279738 ~ 24371432 (-)
LOC110495852 LOC106574460 other downstream 1866907 23542411 ~ 23543631 (-)
LOC110495851 LOC106574449 other downstream 1869144 23479558 ~ 23541681 (-)
G1531142 NA other upstream 92338 25519421 ~ 25523180 (-)
LOC110495915 NA other upstream 146355 25571910 ~ 25574981 (-)
G1531236 NA other upstream 269456 25696539 ~ 25708874 (-)
G1533378 NA other upstream 1760539 27187622 ~ 27189549 (-)
LOC110495948 LOC106574314 other upstream 2327091 27754174 ~ 27798978 (-)

Expression


Co-expression Network