LOC110496923 (LOC106575216)


Basic Information

Item Value
gene id LOC110496923
gene name LOC106575216
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 25437923 ~ 25440347 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002469620.2
ATAGCATTTTAAAACAGCCTCTTTAAAACTGAATCAAAACATTCAACTCTAATGCAGCCAATCAGAATCATAAAAGGGGagattatttaaaaaattgtcaTTCAAATACTTGTCACTGTGTTATATAGACCTGGAATATGCTATTCTGTACAAAGTGGGGTTAAAAAGACAAGTGACAGGATGCAATGTATGCTTTACCTTAAACTCATAGGTGCACTTGGCACCACCATGGGGGTGAATGAAACCACAAGGCACCAAACCAACGTAACAACAGTGGATGGAGAAGTACAGCAATGCTCAACCTGCGAgttcagagaacagaacagactaaTGAGACTCGCAACATCAGATCCCAAATTCTCAGCATTCTGAGGCTCGAGCAGGCTCCAAACAAACATCAGCAGATAAATGATCAGGCAGCTCTTACCAAAAGCTCCCATCCTTTCACAATTTACAGACCAGTATGAGCATCGTGTGGAGGGTGAGGAGCGTGCCCCAACTGAAACGATCATATCCATGGCAACACCTGGACCAATGTCACAACAAGACGGAATACCATCTTGTTGTTTCTTCAATCTCAGTCCGAAGATTCGACCTAACAACATTTTACATGCACAACTTTGGGTGAACCTGCGGCCGGCTGAGGGAAACTCGCGCATACGGATCCTCTCCCTGAAAATCGATGTGGCTTCTGGTGCAAGCTCTTGGCAAAGTGTAGACATAAATCAATTACTCAAAACCTGGCTTCATCAGCCCGAAACTCATTATGGTCTCGAGATCAAAGCTTATGATTCGAAAAGGCAGGATTTAGCTGTCACAGTAGCAGAGTTGGGAGAAGAGGGACTGCAACCCTTCATGGAGGTGAAGATATCGGAGAACCTAAAGCGTTCCCGGAGGGACTCAGCCCTGGACTGTGATGAGGAGTCCTCAGAGACGCTGTGTTGCCGCTACCCCCTCACCGTCGACTTTGAGGCCTTTGGCTGGGACTGGATCATTGCCCCCAAACGCTACAAGGCCAACTACTGTTCTGGAGAGTGTGAGTACATGCACCTCCAGAAGTACCCCCACACTCACCTGGTGAACAAGGCTAGCGCCCGGGGTACCACAGGGCCCTGTTGTACTCCAACTAAGATGTCCTCCATCAACATGCTCTACTTCAACCGCATGGAGCAGATCATTTATGGGAAGATACCATCTATGGTGGTGGACCACTGTGGCTGCTCCTGAGCGGGAggatgagaggacaggacaaaacacacacgcacattgtgttgtgtaatgAGTTAAAAAAGTTATCCCAAAGTGAACCCTCTTACAAGAATCCATAATATTTTTGCATAAACGGCTACAGGAGACATGTGAAGTTTGAAAAACATGAACCTTTTGCTCTGAGTGAGGACATGAACTGCCCATACTCTCCCCCCAAGGTTCGTCCCGCAATGTGGCTGGAACTGCTAGAAATATTTAAGGACACATAACACAATTGTCATAGGAGTGCAAAACCTGCACTGAAACAGATGTCCCCGATATTGTGGATCACAGGATTTTGGAACAGCTTGGTGGTCCTCAGAACACAGTGTCACATACAGAGCTACTCTAATAGCCTACATGAATTGAAACCAAAAATGGTATGTTCCTTATGTAGCTAAATGTTTCAGGCCTATAGTCATATTATATTGTGATCAGTTTAGCCTACAGATTATGCTAGGCATTAGAGCTTTCCTAGTACCATATCAACTCAAATCAATTCATATTTGGCACACGGTCAAATATTATTGCACTGGTGGAGCTAGGAAAACAATAACAACTGCTAAatatttgtatgtgaccaataattaaggttgcacattttggggatttttcagaggtggaaactttctgtgggaattaacagaaatatatgggaattaacagaaatattttttaattaatattaataccatttaaatgtagatttttttgcattggatatacagtatttaccatatcatatggagaaaGAAACATTTTAAACCTTGTAAAaaaggg

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K04669 TGFBRX; TGF-beta receptor, other

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002469620.2 True 2028 mRNA 0.43 3 25437923 25440347

Neighbor

gene id symbol gene type direction distance location
stat1-1 stat1-1 coding downstream 10840 25410400 ~ 25427083 (-)
LOC110495907 LOC106574282 coding downstream 42778 25392267 ~ 25395145 (-)
LOC110497105 LOC106574281 coding downstream 46559 25377735 ~ 25391364 (-)
LOC110495906 LOC106574280 coding downstream 60387 25348864 ~ 25377536 (-)
LOC110495905 LOC106574279 coding downstream 94424 25283955 ~ 25343499 (-)
LOC110495910 LOC106574285 coding upstream 13394 25453741 ~ 25474749 (-)
LOC110495911 LOC106574287 coding upstream 51171 25491518 ~ 25498651 (-)
LOC110495912 LOC106575218 coding upstream 64535 25504882 ~ 25530613 (-)
LOC110495916 ahr1 coding upstream 109716 25550063 ~ 25630757 (-)
LOC110495915 NA coding upstream 131563 25571910 ~ 25574981 (-)
G1531057 NA non-coding downstream 28350 25407171 ~ 25409573 (-)
G1531050 NA non-coding downstream 101963 25333565 ~ 25335960 (-)
G1531039 NA non-coding downstream 155073 25282646 ~ 25282850 (-)
LOC110495901 LOC106574277 non-coding downstream 177520 25257000 ~ 25263674 (-)
G1531063 NA non-coding upstream 29278 25469625 ~ 25480582 (-)
G1531132 NA non-coding upstream 47473 25487820 ~ 25488050 (-)
G1531134 NA non-coding upstream 48349 25488696 ~ 25488908 (-)
G1531145 NA non-coding upstream 81049 25521396 ~ 25525185 (-)
G1530967 LOC106574270 other downstream 286929 25150068 ~ 25150994 (-)
G1529613 NA other downstream 1044239 24393375 ~ 24393684 (-)
LOC110497104 LOC106574262 other downstream 1153929 24279738 ~ 24371432 (-)
LOC110495852 LOC106574460 other downstream 1894430 23542411 ~ 23543631 (-)
LOC110495851 LOC106574449 other downstream 1896667 23479558 ~ 23541681 (-)
G1531142 NA other upstream 79074 25519421 ~ 25523180 (-)
G1531236 NA other upstream 256192 25696539 ~ 25708874 (-)
G1533378 NA other upstream 1747275 27187622 ~ 27189549 (-)
LOC110495948 LOC106574314 other upstream 2313827 27754174 ~ 27798978 (-)

Expression


Co-expression Network