LOC110495914 (ahr2d)


Basic Information

Item Value
gene id LOC110495914
gene name ahr2d
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 25634825 ~ 25717780 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571435.2
AGCCTTTACGTTCGCCCAACTGGaggagtgtacagtatgttaatgcaTTAGGGATGACAGCataacaaatatataaaaaaggaAGGAGTCAAATGTGTTCGGTTCACGCACGACATTTCTAGCTGCTGTGCAGTTTGAAAAGTTTGTCTAACCTTTTACAATCAAAAAGCAATTTTGGATTTATCGGTCTGGTATACCAAGAGGAATAGTGTCTGCGCATATTTGGAGCTTCGACGTATGAGACGTTCTGTACATCGGAACGGAGTCCTTGTGGATATTTACATGATACAGAGCTTTATCAGGTCGTGTGTCTTCGAAAACTATCTGCAAGAATAAGAGGGAAACGTATTAGATAGTCTTATTCTGTAGACTTTCTTAGTGAGATAGATATACATCATGTTGGGGAGTACGGCGCAGTATGCAGCTAAGAAACGGAAGAAGCCTGTTCAGAAAATtCCTAAACCCCCTCCTACAGATGGCATCAAATCGAATCCGTCAAAGCGCCACAGGGATCGGCTGAACGGAGAGCTGGACAAGTTGACCGGGCTGTTGCCGTTCTCGGAGGACGTATGTGCGAGGCTGGACAAGTTGTCTGTGCTTCGGCTCAGTGTGGGATACCTAAAGGTCAAGAGCTTCTTCAGTGCGACCATGAAGAAAGGCAGTCcagggtggggggtggagagagcGGTGGGATTCGGAGGGACTGGACCGATCACTCTAGCGAAGAGCACAACTGCTACAACCTCTGTGGATGCGGTCACGTTTTCCGAGGGAAACCTCCTGCTCCAGgCCCTGAACGGCTTTGTGCTGGTGGTCACGGCGGAGGGATACGTGTTCTACTCCTCTCCTACTGTTCAGGACTACCTAGGCTTCCACCAGTCAGATGTGGTTCACCAGAGTGTGTTTGAGTTGATCCACACGGACGACAGGGCCTTGTTCAGACGTCAGCTCCACTTCGCCCTTAACCCCAACCAGTTTGATACAGAGCCAGGGACAACAGAGAGCCTGCAGCCTAACAACAGCAGTGACATCACCAGCAACATAGTGAGCTACAACCCGCAGCACATTCCCCCTGAGAACTCCTCCTTCCTGGAGAGGAGCTTTGTCTGTCGCTTCCGCTGTCTCCTGGACAACTCCTCTGGCTTCCTGGCCCTAAACTTCAATGGGCGTCTGAAGTACCTCCATGGCCAGAACAAGATGTCAGATGACGGGACCATAGACCATCCCCAGCTGGCCCTGTTTGTGGTGGCTACCCCCATCCAGACCCCCTCTATCCTGGAGATCAGGACCAAGACACTTATATTCCAGACCAAACACAAGCTGGACTTCACACCCACAAATGTTGATACACGAGGGAAGGTGGTTCTGGGCTACACTGAGCTGGAGTTGTGTATGAGAGGCTCTGGATACCAGTTCATCCACGCTGCTGACATGATGTACTGTGCCGACAACCATGTCAGAATGATAAAGACAGGTGAGAGTGGTCTGACTGTGTTTAGGCTTCTGGCCAAGAATGGTGTGTGGGTCTGGGTTCAGGCTAATGCCAGACTGATCTACAAGGGAGGGAGGCCCGACTTCATCATGGTCAGACAGAGACCGTTATCAAATAAGGAGGGTGAGGAACAGCTTCGCCAGCGGAGACTCCAGCTGCCCTTTAACTTCGCCACTGGGGAAGCTGTTCTCTACGAGGTGGGCCTCTCTCTGGACGTAGCTGACGTTCCAACTCAGAGCAAGGGCCCTAAGATCAGGAAGATGGCCGAAGAAATGGCCCTGGACCCCGACTCCCTGCTGGGCTCCATGCTGAAGCAGGACCAGTCCGTCTATATGCAGACCAGCCCCAGCGAGCCCTCCAGCGAGCCCCCCAACCCTCAGGAGCTGTGCtcctgggaagaccaggccttCAGCAACAGCCACGCAATGGCCAACGTGCCTGGTGATTCCTGGCAGTCCCAACACCACACTGTGCCCAAGCCGGACGCGGGCATCAGGGAGGAGTCCACTGTCCAGGACCTGATGGAAACACTGCAGCAGATCATCGGGGACAACAGCCTGTGTTCAAGCCTGGATGTGGACCTCACGGAGCTGAAGGACTGGGAGAACACTCTGCTGAAGATGAGCTCCAGCAACTGTGAGATGTCCGAGGACCTTGATGACATCCTCAACCATGACATCCTGTCATATGTGGAGGAACATCTCTTTAAGGAGAACGGAGGACTCAAGATGCCCGAGCATCTGGGCTCAATGCTGGGTTCCGTCAGTGTCAACAATCCCCTCCTGGAGGTACCAGAGTGCCTTACAAATGTCGACCTGCAGGGGAATACCATGATGCCTGGAGGAAAGGGCTTCAACTGGGGGGTTGATCACCAGCAGAACCAGTTGCTTGGGATGGGAGGCTTGAGTGCGGCTGAAACAGTGAGTAACGTTCGGGGCACGATGAAGCTGACACACATGGGCTCTCAGATGGGATTGAACAGCCCCACACTCCAGCAGGCTTCCTCCAGGAACACCTTTGCCCAATCCCTGGGAAAGAACCTGGGCCTGGAGAGCCACGCTAACCCTCTGGCCTTTAACCCTTCCCTGACTGGCTCCTGTGCCCAGGTGCGGCAGAACCAAGCCAAAGGTAGGCAGCAAGGCCTCCAGGCCTCTCAGATGCTGTCCAGCCCTGGTAACGGGCTGGCGTCTTATTCCCTGAGACAACAGATGCAGTCAGGCCTTGCCAATCGGAGCTCTGCCACTCAGGTCATCCCTGCTCATATGGGTCTGCCAATCCAGAGCCAGCTGCTGGGGTGGAACATGAATGATCAGCCAATGAGATTCCAGGACCAGAGCTCCATAAGCCAATCAGATCCCTATGCAGTGCCCGGTCAGGAAACTATGTGGATGCCCTTGCCCTCCTCCATGCCCAATACCAACATGGTGGCCGACACCCTGTTGGAAACCTTTGCCCAGAATATTTCAAATCAACCAAAAGACGTCATTCTAGATCCCAACCCTGCTAGCTGCCTACAAGGACACTTTTCCCTGCAGacccagcaacagcagcagcagaaaaTGCTGCCCACAATGTTACACCAACAAAATGGACACCAACACAATGTCATGGGCAGCTTTTATAACAGCCAGGTGTCTGACTTCCAAATTGCTCCCCAGCTCCCTATCCCTGGGCCCAAGGCCCAGCCACAGCAGAACTCTCAGGCCCAGAACTACAACAGGGATCAAACAATATCAGGCCAGTACAGGCCTCAAAAGAGGCCTGCTGCTGAAGTCACCCCTCCTCTCGTCTCTTCCAACAGCTGCATGTTCAGCAGCACCAACCCCCCCTTGGTTCCTGTCAACGGGGTCTGTTTAACCCCCAACACAGCCCTTGGTTCCCTGGTCCCATCCTCCTGTCAGAGGGCCACGGCCCTCCTCCACGACCACAGTCCCTCCCAGGCCTCCTGCTACTTCCAGGGGAACTCCAGTGGGCCCATCGTGGGGTCCTCGGCAATCCCACAAGGTGACACCAACATCAGCCCTCTCTCCTGTCAGGTGGGGCCTGGTCTAACCACTGGGGGCCTCACACCAGACAGCCTGCTGGTCCAGCAGCAGTACCTCAACTGCAACGGGCAGACACAGGTTACAAACTGTCCAATGGAGGAAAACATgttgttccagttcccgccccTGCCCCTGCCCAACGGAACCACATACTTCACAGAGAACAATCAAACCAACTGTTGCGACTTCTAGAAGGTTCTACAAGGAGGAAGAACCCGCCTTTTCCGCGGCTGAATGGAAtttgttaagacactgatgaTGAGCCCTTTCCGCTAAACAAATAAATACACGGACACATACAGACTCACACAGCCAGGTGCCTTTGGGGATTCTACCACCACCATGCCTTACTTCACCAAGGAGACTGGCCAAGATGGCTTCCTTCATTTCTCTTCTATGCGTCTCAAATCGTATGTTTGGATGCAAGATACAAGGCGTTTGGACCAGAGGGTCGCGTGGCTTATTTTTCTTCTGCAACCAGACTCGACTGTCACTGGAGCTCCTCCTTGACTTGCTTTCACCTTGGGTGTGcatgccctggttaaaagtagtgcactatatagggaatagagtgccatttcggACCTACACTCATGTCTGGTGGATGTGGAGAAAAGACAGAATATATTTATTGGTTGTTTTGAATTGTACCCCCCTTTTGAATTGTGCCTCGTTGTGACCTCTGATGTTAAAGAATTTCCAGAAGATTTTGGAAAGGGAAGACGAAAGATGATGAAGTAAGCAGTAAtatggaaaaagagagagcgcGTTGAATGAGATTCCCGGGATTACTtttaagttgtttttttttaaatcccgaAATGCATCTGAATATATAGGATCTAGACGAATTCCAAAAGGAAAGGTGAGATAGTCGATGCCTGGTAAATTGACTACAGTATGACCATACGGGCAAGAAGAAGAGCGTTTGCATTTGGAAAATGCTAAATATGTTGGCATATGATATTATGGACAGGATGGATATCATTACGTACTGTACAATATGTATGTATGAAAGATATATAGTTTAAACTGTATCAAATCGTTGTTTTGATACGGGGAGAGAAACTATTCCCCAGCAATCATAATACTTCAATGGCCTGAATGAGAATTGAAAGAAAAGTTTCCCTCAGTTTGCCTTGTGATGACCTTTTGAGACTTGCCACATGTTCTTGCATCACAAACCATGATCCATTTGGATATATCCCATTATTACAACAAGATATGTTAATCAGAATgtaatgacaacaacaaaaatacatttatttactCAGCTTTGTTTCGTTTTTTGAAAAAAAtgcatattttgtatttttataagCATTTAACCAAAACTATAAATATGTAATTGAGCCAGTCTTTTctgttattttgtgaagtgtccactgggcacacactggttgaataaacgtcgtttccacgtcatttcaatgaaattatgttgaaccaactTGGAATAaacgttgaattgatgtctgtgcccagtgggattccTGTGCACCTGCAGTTTTATTTGCTTCCATTGTGCTTCTATTGATACAAAACACCCGAGAAGGGGAGGTGCCTTGGTAAAGTATTCATGCAGAAATGCATCAGATAGTTTTAAGTGCCTCATTTGCATAGATATGCAGATGAGAAACATATTTCCAGATGAGAAACTGATTAACCAATCATGGAAAAGCATATAATCACCAGTCAATTTGAAAAGAAAAAGTAGAGCCACTGttcaaactgcattgttgataTGCTCTCCTATGCCAATGTGGGAATATCTTTCACTTTACTTTACTTTCTTTGATGAATTATTTTAGCGCCCTGCAGTTCTACAGGGAAGTAATACAGTATTGGCAGCTACAGTTTCAGAATGATCAATGATCCAATTCAATGTGGATTATTCAATGTATTCTAGGGGGATCGGGTGCTTTCAAAAATTGTACAAAAAATACAGAATCTTTAATGAACACCGTTAAGTGTCCATATTGAAAGTATATTTGTCTGTGTTCTTGTCTGCATGCTTCTGCAGAATGTCGGCACTATAACTATTGCACTGAGGCCAAGGCGCCTTTCTATATGCAGTACCATTTTAATGCGTACATACtagttttattttgtatttttaagtAACGTGGCCTTTATAAGATTCACACCTATTATTATACACTATATTTTAGACGTATGTTTTCCGCACACAGAACAGTTCATGTCTGTAAAACCCTTTTTGACCTGTTTCCTCAGAACAGTATTTATAAATATTCACCTTGtggcttttgttgttgttgttttttctgccTCTAACAATGTGTCAGCCATGGCGCTTACGCCTCAATTGTTATATTTCATCTCCACATTATTAAAGGGGGTTAATGACTTTTCATAGGTTTGTCTGTTCAGAATCACTTTTACTTGTCAAGTACATTTAAATGTATCAGGAATTTGACCTGGTGAGATTTATGTTGTGttttttggaaaatgttttttttttaaattgattttcACAATATTCAATAAATCTTCAATGTGATGGTCAA

Function

NR:

description
aryl hydrocarbon receptor-like

GO:

id name namespace
GO:0009636 response to toxic substance biological_process
GO:0030522 intracellular receptor signaling pathway biological_process
GO:0071407 cellular response to organic cyclic compound biological_process
GO:0071466 cellular response to xenobiotic stimulus biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0004874 obsolete aryl hydrocarbon receptor activity molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571435.2 True 6065 mRNA 0.47 13 25634825 25717780

Neighbor

gene id symbol gene type direction distance location
LOC110495916 ahr1 coding downstream 4068 25550063 ~ 25630757 (-)
LOC110495915 NA coding downstream 59844 25571910 ~ 25574981 (-)
LOC110495912 LOC106575218 coding downstream 104249 25504882 ~ 25530613 (-)
LOC110495911 LOC106574287 coding downstream 136174 25491518 ~ 25498651 (-)
LOC110495910 LOC106574285 coding downstream 160076 25453741 ~ 25474749 (-)
LOC110495917 NA coding upstream 26593 25744373 ~ 25770731 (-)
LOC110495918 LOC106574290 coding upstream 56886 25774666 ~ 25808289 (-)
s100b LOC106574292 coding upstream 120724 25838504 ~ 25840385 (-)
aox5 LOC106574294 coding upstream 217497 25935277 ~ 25961629 (-)
si:ch211-246m6.4 LOC106574296 coding upstream 255890 25973670 ~ 25976403 (-)
G1531208 NA non-coding downstream 14799 25619827 ~ 25620026 (-)
G1531206 NA non-coding downstream 18108 25616396 ~ 25616717 (-)
G1531165 NA non-coding downstream 74312 25560157 ~ 25560513 (-)
G1531145 NA non-coding downstream 109640 25521396 ~ 25525185 (-)
G1531240 NA non-coding upstream 245 25718025 ~ 25718336 (-)
G1531224 NA non-coding upstream 17669 25735449 ~ 25736981 (-)
G1531266 NA non-coding upstream 54528 25772308 ~ 25772523 (-)
G1531268 NA non-coding upstream 73717 25791497 ~ 25804760 (-)
G1531278 NA non-coding upstream 100664 25818444 ~ 25818697 (-)
G1531142 NA other downstream 111645 25519421 ~ 25523180 (-)
G1530967 LOC106574270 other downstream 483831 25150068 ~ 25150994 (-)
G1529613 NA other downstream 1241141 24393375 ~ 24393684 (-)
LOC110497104 LOC106574262 other downstream 1350831 24279738 ~ 24371432 (-)
G1533378 NA other upstream 1469842 27187622 ~ 27189549 (-)
LOC110495948 LOC106574314 other upstream 2036394 27754174 ~ 27798978 (-)
LOC110496785 LOC106574363 other upstream 2143266 27839770 ~ 27914607 (-)
LOC110495955 LOC106574324 other upstream 2317184 27995381 ~ 28092196 (-)
LOC110495963 LOC106574327 other upstream 2633598 28241494 ~ 28368147 (-)

Expression


Co-expression Network