LOC110495918 (LOC106574290)


Basic Information

Item Value
gene id LOC110495918
gene name LOC106574290
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 25774666 ~ 25808289 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036952421.1
acacacgcgcgcgcgcgcgcgcttGCAAATGAAGCAGGTGAGATGCTCACTGCGTGCTCAACATTCTGATTGATTGCCCTTTGGAGTCGCGACGATGCTAGTGCGTCGGAACGCACCAGAAGTAACCAGCAATCCTTGATGAAGAACTTAAAGCTATTGTCCTTATAAATATAAATAGCGACTTTTGTTGTTTTTGAAACAACGTCTTTAAGATGATATTTGTGAGAAGGTCTCTACGATAGAGCTGGAAAGCCACAGGAACATTCTGAGCGGCGGCGCGCACACGTTTGGACCTATTTTCTGGAGACCACCGGCAGATGCAGTAACGCAAATTGGATAAAATGCCTGCTCTGTTGGCGAAAATGAGCTCGAGAAGCGCCTCGTGGTTCTATGCATTCAGTGTCGTTGTTTTAAGTATTTGTGGATCCACACATGCAGCAAAAAGTTGTAATGGACCATTGCTATCAGTTTTGCCTGAGTCATCCTTCAAAAGCTCTTCAACATCCTCCAATAGTCAGCTGCCTCACTCCGCAAAGCTGAACAGAAGAGAGGGAGAGGGTGGCTGGGCCCCGGAGCGGTCAGACAGACAGCCTTGGCTCCAGCTGGACCTCAGGGAGAAGATGGAGATCACGGCCATCGCTACACAGGGCCGTTCAGGGAGCTCTGACTGGGTGAGCAGCTTTATGCTGCTGTTCAGTGACTCTAGCCTGGCTTGGAAGCAGTACGGACAGAGCGAAGACACTGGGACATACAGAGGGAACACAAACTCAGAGGGTGTGGTCCAACACAAGCTGGTCCATTCCATCGCAGCGAGGTTCCTACGCTTCATCCCACTGGACTGGAGCACTACAGGATGGATCGGCCTCAGAGTGGAGGTCTATGGCTGTGCATACAAGTCAGATGTGGCAAACTTCAACGGCAGGAGTGCTCTGTTGTACCGATTTAACCAGAAGTCCCAGAGAACGGTGAAGGATGTGATCTCCCTCAGGTTTAAGAGCTATGGGGCAGATGGGGTGCTGGTGCACGGGGAGGGACACAGAGGAGACTACCTGACATTGGAGCTGCACCACGGGACCCTGGCTCTGCACCTCAACCTGGatGACGCTAAGCTCTACCCCAGCAGAGGGAATGTGTCAGTGGGCCTGGGCAGTCTCTTGGATGACCAGATCTGGCACTATGTCCTAGTTAAACGCTCCAACAAGCAGGTCAACCTCACCGTGGATGGGCACACACGTCACCTCAGTACCACGGGTGTGGAAGACTCACTGGAGGTGGACTATGAGCTCAGCTTTGGAGGAATTCCTATACCTGGTAAACCAGGAAGCTTCCTTAGGAAGAACTTCCATGGCTGCATAGAGAACCTCTACTATAATGGAGTCAGCATTATCAACCTGGCCAAGCGACGCAAGCTCCAGATCCACAGTGTGGGCAACGTGACCTTCTCATGCTCTGAGCCCCAGCCTCAGATGGTGTCCGCCACCTTCCTGTCCTCCAGCGGTAGCTACCTGTCTCTACCCCTGGGTTCTCTTGGGGTGTGGGGGCTGGACATACACTTCCACTTCAGGACCTGGAACCAGGAAGGACTTCTGTTCTCCACCGGCCTGGCACAGGGATCACAGCACCTGGTGTTGCAAATCAGCGGAGGTCAACTGCACCTAATGGTCCATGGAGCTGCTGAGCAGAAAACCAACATTTCCATAGAAGTTGGTGTAACTGATGGCCTGTGGCATTCTGTTAGTCTGAGCTACAGAGATCGGATGGTTTCCCTGGTCTTGGACAATGAGCCAACATCTACCGTGGACGTACAAAGTCATGCAGACTCAGGCAATAGTGTATTTTTTGGAGGTTGTCCCCAATACAGTGGTGACTGTAAGAAACCTACTGTGGCCTTCCAAGGGTGCATGCGTCAGATCTTCCTAAACAACCAACTTATGGATCTACCCCATGTGCAGCAAGGGCTTTTGGGTAATTACAGCAAGCTTCAGTTCGACATCTGTGGGATCCGCAACAGATGTCTGCCTAATTTTTGTGAGCATGACGGACGATGCACCCAATCATGGGATACTTTCTACTGTGACTGCTCAGGGACAGGCTACACTGGAGAAACCTGTCACAACTCTATTTATGAAGCGTCGTGTGAGGCACACAGACAAATGGGGAGTACGTCTGGCAACTTCTACATTGATCCCGATGGGAGTGGTCCTCTAAAGGCAGCACTGGTCTACTGCAACATGACTGAGAACAAGGTATGGACAGTGGTGGGACACAACAACAGGGGGTCTGTGAATGTGACTGGAGCCACAACAAAGAAGCCATATGTGATGCGGTTCAACTACACTGTCTCCCTGGAGCAGCTCCGCACTCTGATTGGACGGTCTGAGCACTGTCAACAGGAAGTGGTCTACAGCTGCAGGAAGTCCCGTCTCTTCAATACTTGGGACGGGAGGCCCCTGTCGTGGTGGCTGGACGGGAGTGGAGAGAAACAGACCTACTGGGGAGGCTCTGTACCTGGGGTCCAACAGTGCTCCTGCAGCCTGGAGGAGAACTGCATCGACATGAACTACTTCTGCAACTGTGATGCAGACACTCACTTGTGGGTAAACGACACAGGACTGCTGTCCTACAAAGATCACCTACCACTGACTGAGATTGTAATAGGAGACACCAACAGGACAGGCTCAGCAGCTGTATACAGAGTCGGCTCCCTTCACTGCAACGGTGACAGGTTCCTGTGGAATGCAGCCTCTTTCTACCCCGGGTCATCATCCCTCCACTTCCCTAAGTTCCAGGCTGAGCTCAGTGCGGACATCTCTCTGTACTTCAAGACCACGGCTTCCTCTGGTGTTCTCCTGGAGAACCTGGGGACCACTGACTTCATCACGCTGAAGTTGACCACTCCCTCAGCTGTAACATTCATCTTTGACGTGGGAAACGGCCCGGTGGACTTGACGGTGACGTCCCCTGTCCCCCTGAATGATAAGCAGTGGCACTATGTTAGGGCTGAACGCAACTTAAAGGAGGCCTCCCTGCAAGTGGACCAGCTGCCCCTACACACTCTGGAGGCCCCCTCTGAAGGGCACTACCGTCTGCAGCTCAAAAGCCTACTGTTCATAGGAGGATCCACCTTCAAAGAGAGCACTTTCCTGGGCTGCATCCGTGCGTTGACCCTGAACGGCGTGACCCTTGACCTGGAGGAGCAGGCCAAGTTGACCCCAGGAGTGACCCCAGGCTGCCTGGGCCACTGCAACGGCTCTGCTAGTGTCTGTCATAACAGAGGGCGGTGTATGGAGAAAAACAGTGGATATGTCTGTGACTGTACACACTCTGCCTACAATGGACCACACTGCAAGAAAGAAGTGTCAATGTCCTTTGAGAGTGGCTCCTCGGTGACCCTTACCTTCCAGATGCCTTTCCCAGTCATGCACAACAGAGGCAGAGATAGCCAGTCATCTAGCAGTCAGCCAATCCATAGCCAGTCGTCTAGCCGTCAGCCAATCCATAGCCAGTCGTCTAGCCGTCAGCCAATCCATAGCCAGTCCTCAGCCATCTATGCCCACAACGGCGAGTCCAGAGAAAACGTTGCCTTCAGCTATCTGACGACTCACACCCCTGCCATGTTACTCTGTGTCAGCACCTACCATCAACAGTACCTGGCTATCATCCTGGCTAACAACGGGAGTCTGCAGATCTGGTACCGTctgaacagagagaagagagcagagatcTTTACTCCCAAAGTCTCCAGCCTAGCCGATGGGCAGCTCCACCGTGTCCAAGTACACCGGGAAGGCAAAGACCTTTATGTCCAGATTGACAAAGACATCGACCAAAAATACAACCTTTCTTCTGACATGAAGATGAACACACTACGATCTCTGACTTTAGGTAAAGTCACAGGTACATCAGCAGGACATGCTGGTTTGGATGAGGAAGTGCTTAGGGCAGGATCCAAGGGTTTCATTGGCTGCCTGTCGTCTGTCCAGTTCAATCATTTGACACCGCTGAAGACAGCCATTCTGAGTCGTGGAAGCTCATTGGTCCATGTTCTTGGCAATCTAGTTGAATCGAACTGTGGAGCGTTGGCTGATAGTACAACTTCACAATCAGCATCTGAGGGTGTCGATAGGGGCGTAGATCGACTGAAGAAGACAAGAAGTGATTCAGCAGTCATTGGAGGTCTCATCACAGCTGTGTTCCTCATCACCCTCTGTGCCGTGGCCGTGACGTCGTGCTTCCTGTATCGCCGctgcagccacagccacagccacacccacacccacccccTGGAGAAGGCCTCCATCTCACAGAAGAAGGATTCCAGGCACAGCCCGGAACACAGCTACCCTGCAGGCCTGGAGAACAGCTATCCTGTAGACTTGGTCTTGGATCTAAACCTGGACCTACACAGCTCTGTGAGTCACAGCAGAAAGGAGTACTACATCTGATGCCACCATAGCCTTCTTTGCCCAATTTCCTGCCTCCTGTTCCGCACGCTGTTCTGCCTGGCCTCAAATACAGAACAGGCCCCTCTGGTTAGAGCAgccattcatcacaaaacccagtGTTAAGTCACCTGACTGTTCCCGGGCTATCTAGGAGCAGTGATCATTGGTGATCCATTCCCTGTGTGGCTACAAGAAGGACCCAATGGAGGATGGTCATGCCGCAGTGTTATATCTCAAAGGCTGTTTATTGGAGCATGGGAGCTGTACCTCTTTTGATGAGCGATGACAATTGGAGAACATTTATTGTGTTACATTGCTCTAAAGTCAGGAGACAAAAAGCCTCAATGAATCGGATCCCCCCCAGTGACTTTATAAGCCCGCTTTATATAGGCTTCCATTCTGAATGTACAATTAAAGGGATTTATTCATTTGGGGTTGGTTGGGCACCGGTACTCTAACTCACTTACTTGTATTCACTTGTGGATCATGAACGTGATAATGACTAATTAATGATGTTCGACCATCTGCCAAGGCAAGGTCTGAGCAAGCAATGCACCTGCTCTTGCTCCCTGGCTAAACCACTGATCAAATCTCGCTGAGAAGCATTGTGACTATGTGCCAAGGTCTTTGTGGCTGGCCCTTTTGTTCTCGGAACATGTCGTTTCTTTTTCTGTTCCCAGTATGTTTGTTGCGAACCTCACTGCCAATAACCCTCGTCCACCATCACCGACATCCCCTCGACATGTTATGCTTTTATGAATCACCAAAGGGTGGTGCAGTAAACTGATACTAGATGTCTGAAAGTCAAAGTGTAGTACAGTACAACGTTATGTGATTGTGCTAGTAACTTTTGAAGTGAATTGTCTCTCGACCTGTAGGAGATAATCAGAGGGAATCTAGGGTATAAAGGTAGGTTCATTCTCAGGAGAGCTCTTGTCCTGGTTGATGTTGTGAGTTTTGTTGAACGGAGAAGTACAGTGTTGTACAAATTTGCTGCGGTCTCCTCCACAATCCATGTTACTTGCTCTTACATTGGTAAAACGGCAAGGCTTTATATTTTGCACAATTAGCAAACCAACAGAACAAGTAAATTGTACAACAAATCTGTTTAGCAAGCTTGCAAGGTATACAAAGGAAACATGTATTCAGGGGATGATTTTCTGTCATGAAAGACGCATGATAAAGGATTGTTATTGCCTGGTTATATTATTTAAAGTGCATTAGGTCATTTATCTACAGTATTTTATTGTAAAAGATGTACAAACGTCACTGACACAATCATTGAATACGATTCATTTAAATATTGCAGTTATTTTGAATTTGTTTTATAGAATTCTTCAGGTATATTGTAAACAAATGTATATTTAATAAAGACATTTTTACAGCTTCATGTGAA

Function

NR:

description
contactin-associated protein-like 5 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036952421.1 True 5841 mRNA 0.50 23 25774666 25808289

Neighbor

gene id symbol gene type direction distance location
LOC110495917 NA coding downstream 3935 25744373 ~ 25770731 (-)
LOC110495914 ahr2d coding downstream 56886 25634825 ~ 25717780 (-)
LOC110495916 ahr1 coding downstream 143909 25550063 ~ 25630757 (-)
LOC110495915 NA coding downstream 199685 25571910 ~ 25574981 (-)
LOC110495912 LOC106575218 coding downstream 244090 25504882 ~ 25530613 (-)
s100b LOC106574292 coding upstream 30215 25838504 ~ 25840385 (-)
aox5 LOC106574294 coding upstream 126988 25935277 ~ 25961629 (-)
si:ch211-246m6.4 LOC106574296 coding upstream 165381 25973670 ~ 25976403 (-)
si:ch211-246m6.5 LOC106574297 coding upstream 173151 25981440 ~ 26034935 (-)
lrp1ba LOC106574298 coding upstream 238139 26046428 ~ 26210379 (-)
G1531266 NA non-coding downstream 2143 25772308 ~ 25772523 (-)
G1531224 NA non-coding downstream 37685 25735449 ~ 25736981 (-)
G1531240 NA non-coding downstream 56330 25718025 ~ 25718336 (-)
G1531208 NA non-coding downstream 154640 25619827 ~ 25620026 (-)
G1531206 NA non-coding downstream 157949 25616396 ~ 25616717 (-)
G1531278 NA non-coding upstream 10155 25818444 ~ 25818697 (-)
G1531292 NA non-coding upstream 26193 25834482 ~ 25834714 (-)
G1531298 NA non-coding upstream 35606 25843895 ~ 25844105 (-)
G1531325 NA non-coding upstream 76593 25884882 ~ 25885174 (-)
G1531363 NA non-coding upstream 90376 25898665 ~ 25898878 (-)
G1531236 NA other downstream 65792 25696539 ~ 25708874 (-)
G1531142 NA other downstream 251486 25519421 ~ 25523180 (-)
G1530967 LOC106574270 other downstream 623672 25150068 ~ 25150994 (-)
G1529613 NA other downstream 1380982 24393375 ~ 24393684 (-)
G1533378 NA other upstream 1379333 27187622 ~ 27189549 (-)
LOC110495948 LOC106574314 other upstream 1945885 27754174 ~ 27798978 (-)
LOC110496785 LOC106574363 other upstream 2052757 27839770 ~ 27914607 (-)
LOC110495955 LOC106574324 other upstream 2226675 27995381 ~ 28092196 (-)
LOC110495963 LOC106574327 other upstream 2543089 28241494 ~ 28368147 (-)

Expression


Co-expression Network