s100b (LOC106574292)



Basic Information


Item Value
gene id s100b
gene name LOC106574292
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 25838504 ~ 25840385 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_021571442.2
AAGAGCCTATTGGTCAGTGTGCTGGACTGGTAGGGTGGTTGACCAGAGGCACTAGGCCCTCCCCACACCAACTATAAAAGCCTATACTCTTTGTCCCTCCACAGCCACTACTCACTCTCATCCGCAAATCACCTTTGTTCCAGTCCGAGACTCACTGATCGCATTACAAACCACAATGACTGATCTGGAGAGTTCACTGGCCACCATCATGGAGGTGTTCCATAAGTATGCAGAGAAAGAAGGGGACAAGCACAAACTGAAGAAAAGTGAACTGAAAGACTTGATCAATGAGGAGCTACCAGCCCTTACAGGGCAAGTGAAGGACCAGGCCACTATGGACAGTTTGATGGAGAGCCTGGACACGGATGGAGACTCGGAATTGGACTTCCAAGAGTTCATGACATTTATCACCATGGTAACTGTCTGTTGCCATGATTTCTGTGAGCACCATGAGGACGAGTAGCTAGGCACCAGttaaacaagagagagagagaaagcgagtaAATTATGAAGTAGGAACTTTAGTTTGATCAAAACAACTTAAATGTCAATGAAAACTTTGTATTTTTCCTGTTGGTTCCATTTAGTTTCAATAGGTTTCTTATACCCTGTTTGCCTACAAAGGGTTAAGGCACTTTGTTTCATTGCCTGTGTCTTGTCTGAGTTGACAAAACCAAATTGTTTTAGCACTGAAACTTCATAGAATAGCTTTTGCCAACAAAGCATAGAGCACTTTCCTTGTTATACTGTAAAGCTAAGACCCAAGGTAATAGACTCATGCATTTCTGCGGCTCTAAATTGGTTCAATTGTTATCACTAACAATGCATGTATAATCAGCTACATTGGACATGGTTTGGCAAGTAAAACAAGTATTCTCCAGTTTGATTTTGAACCCAAACATTTTTGACGAATTCCATCCAATATCTTGATCTGAATTCTGTTTTTATGAAAGTTGTTTTCAAATTGAACTGTGCTTTGTGAGATGCTATTAAAAGTATAACATAGAGAATCAATAAAGATGAATACAAGGACATACTTTTCACCAGTTA

Function


NR:

description
PREDICTED: protein S100-B-like

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K23770 S100B; protein S100-B

RNA


RNA id representative length rna type GC content exon number start site end site
XM_021571442.2 True 1050 mRNA 0.40 3 25838504 25840385

Neighbor


gene id symbol gene type direction distance location
LOC110495918 LOC106574290 coding downstream 30215 25774666 ~ 25808289 (-)
LOC110495917 NA coding downstream 67773 25744373 ~ 25770731 (-)
LOC110495914 ahr2d coding downstream 120724 25634825 ~ 25717780 (-)
LOC110495916 ahr1 coding downstream 207747 25550063 ~ 25630757 (-)
LOC110495915 NA coding downstream 263523 25571910 ~ 25574981 (-)
aox5 LOC106574294 coding upstream 94892 25935277 ~ 25961629 (-)
si:ch211-246m6.4 LOC106574296 coding upstream 133285 25973670 ~ 25976403 (-)
si:ch211-246m6.5 LOC106574297 coding upstream 141055 25981440 ~ 26034935 (-)
lrp1ba LOC106574298 coding upstream 206043 26046428 ~ 26210379 (-)
LOC110495928 LOC106574300 coding upstream 673235 26513620 ~ 26592195 (-)
G1531292 NA non-coding downstream 3790 25834482 ~ 25834714 (-)
G1531278 NA non-coding downstream 19807 25818444 ~ 25818697 (-)
G1531268 NA non-coding downstream 33744 25791497 ~ 25804760 (-)
G1531266 NA non-coding downstream 65981 25772308 ~ 25772523 (-)
G1531224 NA non-coding downstream 101523 25735449 ~ 25736981 (-)
G1531298 NA non-coding upstream 3510 25843895 ~ 25844105 (-)
G1531325 NA non-coding upstream 44497 25884882 ~ 25885174 (-)
G1531363 NA non-coding upstream 58280 25898665 ~ 25898878 (-)
G1531369 NA non-coding upstream 63402 25903787 ~ 25906053 (-)
G1531236 NA other downstream 129630 25696539 ~ 25708874 (-)
G1531142 NA other downstream 315324 25519421 ~ 25523180 (-)
G1530967 LOC106574270 other downstream 687510 25150068 ~ 25150994 (-)
G1529613 NA other downstream 1444820 24393375 ~ 24393684 (-)
G1533378 NA other upstream 1347237 27187622 ~ 27189549 (-)
LOC110495948 LOC106574314 other upstream 1913789 27754174 ~ 27798978 (-)
LOC110496785 LOC106574363 other upstream 2020661 27839770 ~ 27914607 (-)
LOC110495955 LOC106574324 other upstream 2194579 27995381 ~ 28092196 (-)
LOC110495963 LOC106574327 other upstream 2510993 28241494 ~ 28368147 (-)

Expression



Co-expression Network