LOC110496782 (LOC106575224)


Basic Information

Item Value
gene id LOC110496782
gene name LOC106575224
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 25930184 ~ 25943678 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110496782
ATGTACGTCTCTGTTCCTCAGGTGTCATGCGTGGGCCACATGGTGTGTGCAGTGGTGGCTGACACCAGGAAGCAGGCTAAGAGAGGGGCGGCTGTACCTGTTCTGATCTCTCTACCCAGGACTGGTCGGGCTGTGCGTTgtcgggagagaggagaggaaatactGATCACTGGGGCCCGCCACCCTGTCCTGGGCAAACACAAGGAGGGCTTTATGAACGATGGGAGGATAATGGCTGCTGACCTACAATAGTATGCCAACTCTGGAAACACTGCAGATGAGTCTTTGTTGgTAATAGAGAATATTCTCCTTCACCTGGACAACGCGTACAACATGCCCAACCTTCGCGGTCGCTCGGTGGCGTGTAAAACCAACCTGCCCCCCAACACGGCGTTCCGAGCCTTCAGCGTGCTCCATAGCATGCTGGTCACTGAGAACATGATCAATGACACGGCAgggagtctagtggttagagcATCCGTGGCGATTACGGAGCTGCACATCCCCGCCTctctcatccacatcacagagACCAACACCAGTGCTGTACCCAACACCTGCCCCTCCGCCGCCTCCTTTGGCAAGGATGCCAATGGCATGGCCTGTGAAGGTACAGATGCCTGTGAGACCCTGTTCCAAAGACTGGAACCTGTCAGGAAACTGAACCCAGAAGGCACATGGCAGACCTGGACTGTGAGGACAGACATTGTTATGGTTATTGGAAGGAGCATCAACCTATCTGTAGACATTGGCCAGATTGAGGGCATGCAGGGTTTGGGTCTGTACACCATGGAGGAGCTGAGGTTCTCTCCCTCGGGAGTGTTGTACAAACGTGGCCCGTCCCAGTACAAGATCCCTGCTGTCTGTGACAGACCACTGCAGTTCAACGTCTACCTGCTTTCAGGCTCTGACAACCCACATGCCATCTACTCATCTAAGGGCATCGGAAAGCCGGTGCTGTTCCTGGGTAGCTCTGTGTTCTTCGCCATTAAAGAGGCGGTGGCAGCAGCCCGGGTAGAGGCTGGTATAGTGGGACCCTTTACCCTGGACAGCCCTGCTACCCCAGAGAGGACCTGTCTGGCCTGTAACACCCCCTTTACTCAGAAGATTCCAGCCAGCAAACCAGGATCATTCCAACCATAGGTTTTGAATATTCCCTGA
>TU1753186
ACACCATGGAGGAGCTGAGGTTCTCTCCCTCGGGAGTGTTGTACAAACGTGGCCCGTCCCAGTACAAGATCCCTGCTGTCTGTGACAGACCACTGCAGTTCAACGTCTACCTGCTTTCAGGCTCTGACAACCCACATGCCATCTACTCATCTAAGGGCATCGGAAAGCCGGTGCTGTTCCTGGGTAGCTCTGTGTTCTTCGCCATTAAAGAGGCGGTGGCAGCAGCCCGGAGAGGACCTGTCTGGCCTGTAACACCCCCTTTACTCAGAAGATTCCAGCCAGCAAACCAGGATCATTCCAACCA
>TU1753187
ACACCATGGAGGAGCTGAGGTTCTCTCCCTCGGGAGTGTTGTACAAACGTGGCCCGTCCCAGTACAAGATCCCTGCTGTCTGTGACAGACCACTGCAGTTCAACGTCTACCTGCTTTCAGGCTCTGACAACCCACATGCCATCTACTCATCTAAGGGCATCGGAAAGCCGGTGCTGTTCCTGGGTAGCTCTGTGTTCTTCGCCATTAAAGAGGCGGTGGCAGCAGCCCGGAGAGGACCTGTCTGGCCTGTAACACCCCCTTTACTCAGAAGctTCCTCTTTGGGTCAAAGAAGGACTGATGCTGGATGGCCTCTTCTATTGTGAAGAAGACAGGAAGTAGATCCTGCTCCTGGAGGACCTGCATGTAGAATTTGAAGAAGAAGCTGGTGGTAAGGGTCTTGCGATACTCCACCTTCCCTCCGTGGGCAGAGTCAGAtagctccacctcctcctccaaaaGCCTGCAGGCATCAGCCAGAAGCTCCTCCCCCCAGGACCTGAGCCAATCAACCAACACTTCAATTGCAATTCACAAGTTCACCAGATCACCGGAGAGGATGGGGTGTCCCTATCTCATCATTTGAAATGTTTCCGGAGGACGGGTTGCCTTGGGAGAGCAGTTAGTGAAATTCTGCTGTTCTATTAAGTATAAAGGTACCCAGCTCCCAATTAAGTAAGGCATGGCAAAAACACAACCCACCTGTTTACCCACATATTTGTTAGTGGTGTTAATTCCGTGTCTGGAACCCTGACCTTTTCACCGGACGTGcttacctgtcccagacctgctgttttcaactctctagagacagcaggagtggtagagatactctgaatgatcggctatgaaaagccaactgacatttactcctgaggtgctgaccggttgcaccctctacaaccactgtgattattattatttgaccctgctggtcatctatgaacatttgaaaatcttggccatgttctgttataatctccacccggcacagccagaagaggactggccacccctcatagcctggttcctctctaggtttcttcctaggttttggcctttctagggagtttttcctagccaccgtgcttctacacctgcattgcctgctgtttggggttttacgctgggtttctgtacagcactttgtgacaacagctgatgtaagaagggatttATAAAGAaattggattgattgattgattgatgataaaGGAGTATAAGCCAATTTGAAAATGGTTTCAACAGTGTGTTTTTATT

Function

NR:

description
PREDICTED: aldehyde oxidase-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110496782 False 1161 mRNA 0.48 10 25930184 25934979
TU1753186 False 304 TUCP 0.55 4 25934180 25934958
TU1753187 True 1258 TUCP 0.48 6 25934180 25943678

Neighbor

gene id symbol gene type direction distance location
arl4ca LOC106574375 coding upstream 33738 25893317 ~ 25896446 (+)
sh3bp4a LOC106574293 coding upstream 46027 25858996 ~ 25884157 (+)
LOC110495909 LOC106574290 coding upstream 522747 25405613 ~ 25407437 (+)
LOC110495908 ftcd coding upstream 526620 25397926 ~ 25403564 (+)
LOC110495902 LOC106574278 coding upstream 657673 25263995 ~ 25272511 (+)
bzw1a LOC106574295 coding downstream 26738 25961717 ~ 25973319 (+)
kynu LOC106575231 coding downstream 318142 26253121 ~ 26267132 (+)
LOC110495930 LOC106574301 coding downstream 1048002 26982981 ~ 27032712 (+)
LOC110495937 LOC106574307 coding downstream 1311373 27246352 ~ 27256734 (+)
LOC110495939 LOC106574310 coding downstream 1460539 27395518 ~ 27457227 (+)
G1531332 NA non-coding upstream 37252 25892296 ~ 25892932 (+)
G1530923 LOC106574292 non-coding upstream 89831 25838506 ~ 25840353 (+)
G1530909 NA non-coding upstream 107945 25821915 ~ 25822239 (+)
G1530890 NA non-coding upstream 133073 25796876 ~ 25797111 (+)
G1530853 NA non-coding upstream 159480 25769898 ~ 25770704 (+)
G1531446 NA non-coding downstream 95746 26030725 ~ 26031545 (+)
G1531450 NA non-coding downstream 101912 26036891 ~ 26037165 (+)
G1531582 NA non-coding downstream 333850 26268829 ~ 26270336 (+)
G1531595 NA non-coding downstream 371919 26306898 ~ 26307114 (+)
G1531761 NA non-coding downstream 403845 26338824 ~ 26339078 (+)
G1530785 NA other upstream 358838 25566471 ~ 25571346 (+)
LOC110495895 LOC106574270 other upstream 774289 25133210 ~ 25157338 (+)
G1530367 NA other upstream 924575 25004761 ~ 25005609 (+)
LOC110495887 LOC108430494 other upstream 1407238 24520697 ~ 24525649 (+)
G1532307 NA other downstream 822390 26757369 ~ 26757677 (+)
LOC110495947 LOC106575089 other downstream 1701561 27629477 ~ 27750060 (+)
LOC110495958 LOC106574318 other downstream 2012099 27943362 ~ 27958807 (+)
G1533121 LOC106574322 other downstream 2039834 27974813 ~ 28038476 (+)
LOC110495972 NA other downstream 2797796 28732589 ~ 28735229 (+)

Expression


Co-expression Network