LOC110495931 (LOC106574302)


Basic Information

Item Value
gene id LOC110495931
gene name LOC106574302
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 27065029 ~ 27083077 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571461.2
TTGTGCCGGATGTCGTCAGCTACATACAGGAAATGAAAAGGAAGAGGAAAAAGGCCCAAATTCGATACAAACAGAAATGTACAGCTCTGATAACAACGCTAGTGATATTGTTCACTTTCAAATGGAGGACTAATGTTGACTCTCGGAATCCATGGAGACCCATGAAGAAACGCCAATAATCTACACAATGGAAAACAAGCCGATTGTGACATGTGCTGGCGACCAGAGCCTGTTCACTTCCCTCTACACCTCTCTGGCACAGCAGTTACCCAAGGAGCCCATGGAGTGGAGGAGGTCCTACGGACGCGCACCAAAGATGATTCACCTCGAGGCCAACTTTGTTCAGTTCAAAGAGGAGCTGCTTCCTAAGGACGGAAATAGAGCCTTGCTCACCTTCCCCTTCCTGCACATATACTGGACAGACTGTTGTgacACAGAGATGTACAAGGCGTCGGTGAAGGATGACATGCTGCGGTGGCAGAGCACCCTGCGGCTGGACGGCTCGGTGGACTGGCTCATCGTGGTGGTGGAGAGCGAAGCCAAGAAGAAGAACAAGACCAACATCCTGCCGCGCACCTCCATCGTAGACAAGATCCGCAACGACTTCTGCAACAAGCAGAGCGACAGGTGTGTGGTTCTGTCTGACCCTCTGAAGGAGTCGTCTCGGTCCCAGGATTCGTGGAGCTCCTTCCTGACTAAGCTGCGCACCTTGCTGCTCATGTCCTTCACCAAGAACCTGGGCCGCTTCGAGGATGACATGCGCACGCTCCGCGAGAAACGCACCGAGCCCGGCTGGAGCTTCTGCGACTACTTCATGGTGCAGgAGGAGTTGGCCTTTGTGTTTGAGATGCTGCAGCAGTTTGAGGATGCTCTGGTCCAGTATGACGAGCTGGACGCTCTCTTCACTCAGTATGTCCTCAATTTTGGGGCTGGAGACGGGGCCAACTGGCTGGGCTCGTTCTGTGCCCCGGTGAAGCGCTGGAGCGGGCTGCTCTTGCGGCGGCCCATCGACATGGAGAAGCGCGAGCTGATCCAGCGTGGTGAGGCCAGCCTGCTGGACCTGCGCAGCTACCTCTTCTCCCGCCAGTGCACCCTGCTCATCTTCCTCCAGAGGCCCTGGGAGGTCACCCAACGAGCCCTGGAGCTGCTGCACAATTGTGTCCAGGAGCTGCGCCTGCTCGAGgtgtctgtGGTCCAGGGGGCGTTGGACTGCTGGGTGTTCCTCAGCTGTCTGGAAGTGCTGCACAGGATCGAGGGCTGCTGCGACCGCGCCCAGCTAGAGGCCAACTGCTCCCACACTGTCGGCCTGTGGACCTACGCCACAGAGAAGCTAAAGTCTCTGGGCTACCTGTGTGGCCTGGTGGCCGAGAAGGGCCCCACCTCCGAGGACCTAAACCGCACCGTAGACCTTCTGGCTGGCCTGggggaagagagaccagagacggTCAACAGCCTGCAGAGCCCTTACAAAAAACTCAATGAGGCCTTATCGTCTGTGGAGGCATTTGAAAAACACTATCTGGAGCTGTCTCATGCTGCAATGGAGATGTACAGAGCCATAGGCAGGATGCGCTCATCCCGGCTCATTGGAAAGAGTCTAGCTGAGTTTTACATGAAGAAAGGTGACCCGGAGAGAGCAGAGTGCTTCCTTGATGACTCTCTGAGGTCCTACGTGGCAGAGGGGTGGAGCCTGCAGGTGACTCATACCCGGAAGCAGATGGCCGAGTGTCAGAAGCTCTTGCAGCAGACTGAAGACTACCTGCAGACCAGTGCCTTGCTGGCGGGCGACgccaacctgacagaggaggagaggaagcacTTCTACCAGGTGATCCTTACCTTCGCCAGCCAGCCCCCGGCACCctcagACCAGACTGTGGCTCTGAGCATGGCGGCGTTTGCCCAGCTGCGCCAGATGCAGTTCAGCCCGCCTGGCGCCGTGGTGCACGTGGGTGCCGCCCTGCAGCTGGAGCTGCGCGTGCGCTGCCTGATGCCTGTGGCCGTGCAGGTAGAGCAGCTGGCTGCCACTCTCCACTTCAGCCTGGAGCAGGGCGGGGCGAGGGGCCGGGCGGGCGgcacccagaggaggacaggccAGGAACCACAAGGCCAGGGGGACGGGGTGGTCCTGTTCCCCCAGGGAAGCTCCCTAGCTGGGGCCGGGATGGGCGCTTCGCTACCCCCCGCACTGGAGCTTTATGAAATGCAGGACCGCAGCCCGTCGGACAGCTCGCTCAACTCCACGGGGGTGGTGTGTAAGAACATGCACCTGCTGCTGCGGCGCCACGACAGCTCAGCCTCCCTAGACACGCCCACCGCCGGGGCCCTCCCGGCAGCGGTTGCCGTGGACGACGGGGCCCAGATGCTGAGGGCACGCGACATCACGCTACAGCCCGGCGACAACAGCATCTTGTTCACGGCCCCTACTGGAGAGCCGGGCTCGTACACGTTACGTCAGCTGTGCGGGAGCGTGGGGAGAGTCCAGTTTGTCCAGTCTCACATCTACCCTGTGGTGCAGTACGAGGTCTACTCCCAGGAGCCTCAGCTCACCATCGAGCCCCtctcagACAACCTGTTGGCAGGCATTCCCCAGAAGGTGAAGTTCACCATAGCAACAGGCCACTACAATGTGAAGAAGGGTGACGCGCTGCAGCTTAGCAATACAGACTCCATGCCCATCCTCCACTCTAGCTGCTGCTCTGCTACCATCCTGTCCAGCACGGGAGAGCGCGTGGGGGAGCGTGCTCTTTCTGTCCAGTCATCGGAGAAGGTGACCAGCATTTCCCTGCCCCCAACCCCTCCCTACCACACCCTGGAGTTCCAGCTGGAGGTGCTGTGCCACATCCCCCCCACGCCCTTCAAGCCCGACATCGAGCGTCTCACCAATGGCGAGGTTCGCCACCGGCCCAAGAGccacagtcaggcagacagtggCATGATCCACATCGACCAGAAGgTCTCCATCGACTGTCCTTGGTCCATCTACTCCACGCTCATATCCCTCACCTTCTATGTCCCTTTCAAAGCCAAGCACTCAATACTCTCTGCTGGGAAAAGGAAGTATATACAGGTGTGTCTCCAGAACGTGTCCGACACAAACTTCCAGCTGGCGGACCCGGTCCTCACAGAGCGCCAGCCCACAATCCCGGTGGAGCTGCTCTCATTCAATGCTAAAACACAACAGACGGTGTGCAGTCAGCAGTCAGTCTTCTGCCTGTGGGAGATGCGTTGGGCCAAACACCTCCCGCTGTGCCTGCAGTGTGCATTCTCCGCCAGCTTCGCGCCCGTCTCCGCCTCTGACGCACACACAGCCTTCAAACCCTACCGCTACGAGTTCCAGCTGGACCGGGTCTCTACCCTTTACAGCTTGAAAGCCGAGATCTTGCCGTCGTCTGGTGACCAGCACTGTCGCACCGGCGCCCTCTGTGGCCTCGAGGTATCGATCACACGGCAGGCAGAGCCCAGCGAGactgaaggggaggaggaggagtctacagAAATAGAGGGCCTGAGGACCACCAAGCTCATGTATGAAGTGGTGGACAACAGCAGTAACTGGGCGGTGTGTGGCAAGAGCTCGGGGGTGGTGTCCATGCCCGTGGCTGCCAGCGCCACACACAGGGTTCAGATGGAGGTCATGCCCCTGTTCGCTGGGCACCTGCCCTTCCCCAACATCAAAGTGTTCAAGTACCTGCCCCACAGTGCCGTTCCAGCCATTCAGCCGGACACAGACAGCTGCTTAGAGAACGACACCATGTCCCTGCTGGACAAAGGTCTGGACGACCAGGGCGACACGGCCAGCATCCGTAGCCGGGGCAGCATCCACTCGGTGGGCAGTGGGGAGCAGCAGAGGGGTCTGCCCATGCCCCGGCTGGAGCCCTTCAGTCCGGGACAGGTGTTCTATTGGAGCCAGGGGCGGCAGGTGCTGGTGCTGCCTGTTACTGACGACCACGTGATGGAGGTTAACGTCACATGACCCCTGTGGGCCGCTGCCCCCGCCCCTCGCTGTGCCCCCACCACGCCTGGACCTCTGTGGTTTGGTTCCTGGCTGTGGTTCTGGAACCGGGACGTGGCATGGCGGCAGAGAACTGACACTGGCTCTCCTCTCAGGACTCATTGCTGGGCGACCACTGGCCCTGCTCCTGTTCTGGCCTGAGTTCCATCTGCTCTATTTTTAACTTGTCAATCTTTTTCAGTATTCACTGAATTCTCATATGAAaatacccctctctccccccactgtcAGAGAAGAGGGTTTGGTGTACCTGTAATACTAGCTCTTTTATTGGTTCTTGCTCGGTGGAACCCCCCCACGCACCTGTGACTGGCTTGCTGGTTCCACTGATCGTCAACACAACCTTCTGTATGAGGCACACATGGACACACTGTGTTTGGACAGGGGTGCTTCGGTTTGTGGTTGTTtgtattggttggtgtgtgtCTGGCAAGTTGTGATAGATGAAAGGAAAGAGCGGAGCcagttaatttgtgtgtgtgtgtgtgtgggcaataTCATCTTCATATTTCCTCCTCACTCACTTTCAGCCCCTTGCCCCCCAAACCCTGCTGAATCCTCTATCCTTTGCTGTAGTCATAGTGCCACCCTGGCCACTGTACAAACTGTTCAATATGTACATATTATTCCAGAGGAATCACtgtactgactgactgtgtgcaaAGGCTGCACCAAAAACAAATTGTCTCGAAGGAATAGGTTAGAGGTAAAATATTTTTGTTTTCGAGCAGGTGCGAGATGCACTTAATCTGAGTACTAACGAACACATGCTTTTGGCTCTGGAAGAGGACCTATTTTTGCCTTGTTTCTTGTTGTTCAGGTTTTAAGGTTCACTGAAATTCACTTATTCAAGTATTGGTGAAATCTGAGAACAATGGGATGAAATTGAACTTGGTTGTTTTCAGTGACTTTTTTTTCTGAAAGTGACCGTCTGTTTTGAAGTGTTACCATCATGTGTTCTGTATGACTTTGTGGTTTACTTGAATGCTGAGCAGGTAAATTCTATGTTTAGTAAATGTGGTTtctgaccttttttttttttcatttttttttttcagacaTTCGCTGTTGCTACGGTAACTGTCAGGGAGAGCACTTTCTTATCATAGCACAATTCTTTtaacaaaaacaacaatttaGAAGGAGTGGAAATTCGCTTGTATAAATGCGATTGACGTTGGTTTATTGACCTATTTTTGTACTGTGTCGCCGGTCAAGTTCTGTTTGTTGCTCTGTGTCTGTCGGTGTGGTTGGTAGGTATCTACTGGAGGCCGATGAGGGCTTTGGGCCTGAGGCCTTAGCACACCCCCTCAGCTATACTCCTGTCCTGTATTCCTCGACCTCTGGGCTTGTATCTAGCATAATCCCACAAACAGAAAGTAGTGCTCACCGCCAGGACGAAAGGCAGGACGATTGTTCCCTCTATCTGGCCATCTTAATGaaagagaacccccccccccccccccccccccccacactcagaATCTACATACAGAACGTAGTTGCCCGATCCTACAGCAACATAACATGGGCCTGTCTTTCCATGTGTCCTCTGTGTGTCCTCGGGTGTCTAACTGGTCAGGAAAACTATGATATATGAAGACTATGATATATCAGTGCTCGTCTATGTACTCATCTTATTTTATGCCCAGCTGTATTTATTGTCTTTTTTATATATTATTTAACGGCAAATAGCTGGAAGGGATGGAATCAGTCActcacaaaaaataaataatgccaTTGGGAATTGTCTGGtgatctttttttttcttcaagtcATTGGTCACTGAAATCAGATTAAAAAAAATTGTATGTAAATTATTCCATAGAAGTTCAGCACCACTGATTGTTTTCAGATGAATTATTTAAACGAATCATATGTATGCATTATACAGTTGAAATTAAATATACCTATGTTTTAATGTGA

Function

NR:

description
trafficking protein particle complex subunit 10-like

GO: NA

KEGG:

id description
K20307 TRAPPC10, TRS130; trafficking protein particle complex subunit 10

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571461.2 True 5942 mRNA 0.54 23 27065029 27083077

Neighbor

gene id symbol gene type direction distance location
LOC110495928 LOC106574300 coding downstream 472834 26513620 ~ 26592195 (-)
lrp1ba LOC106574298 coding downstream 854650 26046428 ~ 26210379 (-)
si:ch211-246m6.5 LOC106574297 coding downstream 1030094 25981440 ~ 26034935 (-)
si:ch211-246m6.4 LOC106574296 coding downstream 1088626 25973670 ~ 25976403 (-)
aox5 LOC106574294 coding downstream 1103400 25935277 ~ 25961629 (-)
LOC110495932 LOC106574304 coding upstream 13903 27096980 ~ 27140487 (-)
LOC110495934 LOC106574305 coding upstream 69118 27152195 ~ 27156287 (-)
LOC110495935 fstl1 coding upstream 75901 27158978 ~ 27185448 (-)
LOC110495936 LOC106574306 coding upstream 131989 27215066 ~ 27219473 (-)
LOC110495938 LOC106574308 coding upstream 174409 27257486 ~ 27364364 (-)
G1533235 NA non-coding downstream 32327 27027800 ~ 27032702 (-)
G1532505 NA non-coding downstream 171367 26893415 ~ 26893662 (-)
G1532504 NA non-coding downstream 171749 26892971 ~ 26893280 (-)
G1532468 NA non-coding downstream 197917 26866821 ~ 26867112 (-)
G1532436 NA non-coding downstream 223919 26840705 ~ 26841110 (-)
G1533367 NA non-coding upstream 87511 27170588 ~ 27171054 (-)
G1533380 NA non-coding upstream 106545 27189622 ~ 27189973 (-)
G1533383 NA non-coding upstream 110081 27193158 ~ 27193378 (-)
G1533387 NA non-coding upstream 112758 27195835 ~ 27196116 (-)
G1533388 NA non-coding upstream 113526 27196603 ~ 27207572 (-)
G1531236 NA other downstream 1356155 25696539 ~ 25708874 (-)
LOC110495915 NA other downstream 1491358 25571910 ~ 25574981 (-)
G1531142 NA other downstream 1541849 25519421 ~ 25523180 (-)
G1530967 LOC106574270 other downstream 1914035 25150068 ~ 25150994 (-)
G1529613 NA other downstream 2671345 24393375 ~ 24393684 (-)
G1533378 NA other upstream 104545 27187622 ~ 27189549 (-)
LOC110495948 LOC106574314 other upstream 671097 27754174 ~ 27798978 (-)
LOC110496785 LOC106574363 other upstream 777969 27839770 ~ 27914607 (-)
LOC110495955 LOC106574324 other upstream 951887 27995381 ~ 28092196 (-)
LOC110495963 LOC106574327 other upstream 1268301 28241494 ~ 28368147 (-)

Expression


Co-expression Network