LOC110495934 (LOC106574305)


Basic Information

Item Value
gene id LOC110495934
gene name LOC106574305
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 27152195 ~ 27156287 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571466.2
CTGGACATGGAGACCTGTGGCACCAGAGCAAGCAGGCATGCACGGGTTAATTTAAACTGGGGGCGTAGAATCCAAAGTCTGACCAGCCTTTTTATACCGACTACATATGAACTTGATGCAAATGTGACAGCTGTGCGTGTGCGGTCTGTCTTTAATGGAAAAGGATTTGCACATGAGCAGAATGCATAGAGGCTTTATACGGTCGTGATCAGTGCTGAAAGAGCATATACTTTGTAAAATCACATTGTAATTCATTCATATGTTTGAACTAGGTGGATAGCAATTGGTATTGAATATGGAGCTATTTGCAACAGTTGATCAGGGGGGTTGCATTTTGGACATGTCCCATCTGAATCTGGAGAGTTTAAATTTGGACACTGTCGGTGACGAACGGAGGAGAGTGACCCAACAACTCTACCTGTATAACAACCGACTGACAGTGTTTCCCGCTTCGGTATGTCTGTTCTCCAAATTGGAAGTTCTGGATATAAGCAACAATGGATTAACGGTTCTCTGTGAGGACATTCAACGTTTGTCAAACCTCAAAACACTCATAGCCAAGAACAACCGTTTGAACGAATTTTCGTTCCCAAAGGAATTTGGGTCCATGCAGATAGACACATTGAACTTCAGTGGGAACATGTTTGAAGAGGTGCCCACTCAGTTTCTAAAACTCCAGCGATTAAAATATCTGTCTCTTGGGGGTAACAGACTCAAAGCTATCCCCGCAGAGATAGAAAATATTACCAGTCTGGAGATGCTTTATTTGGGTGGGAACCTCATCATCTCCATCCCCCCAGAGCTGGCCAACCTTCGCGGTCTCAGATACTTGGTCCTTTGTGATAACCGGATACAGAGTGTACCCCCCCAACTCACAAGACTCTACTCCCTGCGCTGCCTCAGTCTCCATAACaacctacttacctacctaccgcGGGAGATCCTCAGCCTGGTGCACCTGCAGGAGCTCAGTCTCCGCGGCAACCCCCTGGTGGTCCGCTTCATCAAGGACATGACTTACGACCCCCCCTCCCTCTTGGAGCTGGCCGGACGGACCATCAAGTCCCGCAACCTTCACTACCACCCCAATGACCTGCCTGGAAACCTGGTACAGTACCTGGACCTGGCCAGCAAGTGTCCCAACCCTAAATGTACCGGTGTGTACTTTGACTCGTGTGTGAGGCATATCAAGTTTGTGGACTTCTGCGGGAAGTACCGGCTACCCTTCATGCACTACCTGTGCTCCCCAGAATGCACCTCTCCCTGCAGCTCCAACCCGCAGAGCGACGCTGAGTCGGAGGACGAGAGATGCGTGTCGGCCGACAGGCTGCAGAGAGTGCTTCTGGGATAGAAGAAAGTCAAAGGACCTCGAGTTCAGTGACACACATACTGGATGATGGACAGTTTCCATGACTCCCAACTGACCTGACTAACCCAACTTCTCCTGTGCCAAACACGATAAACACTGACACTAAGCTGTTCACTTACAAAAGAGTGCCACTTTCAACATGAGATGTAGGATTCCTCAAGGACTGATTGTAATGTAAATTAACCACAGTTTATTATTGATATTTGGAGCCGTAGTGTTTTAAACATCTAACTGAAGCTTATGGAGTACTGATTTTGTTGTAGACCACTCATCAAATGTATTTTCATGTACATCCTCAGTTTGTAGTTTCTGTGTTAACATGAAGGGCTGAATGAATTGTATGTCAAATTGATTTTCTTTACAATATAGATTCAGAATCACCTCTCTTCTTAAGTTACCCTTTAATCGTCATACTTTTGTTGACATACTTTTGTCATACTTTTGTTGACGCATGCTCGCACATGCAGTCCTAATATACAGTAGTCTCTGTCGCCTGTAGCATTTACACACCATGCATTAATGCCTTCCCTTATCTCACAAAACAACAACTTTTGTTGTTACTAACCAAGGGGAAAGTTGTGTATGTTAATGAGATGATTTCTTGTTCAAAGAGACTAATCCAGAGCTTGTACTGTGAATTAAATGTTGGTTTGATTATTTTAAATTAACCATTTATTTGAATAAATCGAaatgaatattta

Function

NR:

description
leucine-rich repeat-containing protein 58-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571466.2 True 2070 mRNA 0.45 4 27152195 27156287

Neighbor

gene id symbol gene type direction distance location
LOC110495932 LOC106574304 coding downstream 11708 27096980 ~ 27140487 (-)
LOC110495931 LOC106574302 coding downstream 69118 27065029 ~ 27083077 (-)
LOC110495928 LOC106574300 coding downstream 560000 26513620 ~ 26592195 (-)
lrp1ba LOC106574298 coding downstream 941816 26046428 ~ 26210379 (-)
si:ch211-246m6.5 LOC106574297 coding downstream 1117260 25981440 ~ 26034935 (-)
LOC110495935 fstl1 coding upstream 2691 27158978 ~ 27185448 (-)
LOC110495936 LOC106574306 coding upstream 58779 27215066 ~ 27219473 (-)
LOC110495938 LOC106574308 coding upstream 101199 27257486 ~ 27364364 (-)
LOC110495941 LOC100196748 coding upstream 232422 27388709 ~ 27395340 (-)
LOC118941127 NA coding upstream 367572 27523859 ~ 27526447 (-)
G1533288 NA non-coding downstream 36969 27035775 ~ 27115226 (-)
G1533235 NA non-coding downstream 119493 27027800 ~ 27032702 (-)
G1532505 NA non-coding downstream 258533 26893415 ~ 26893662 (-)
G1532504 NA non-coding downstream 258915 26892971 ~ 26893280 (-)
G1532468 NA non-coding downstream 285083 26866821 ~ 26867112 (-)
G1533367 NA non-coding upstream 14301 27170588 ~ 27171054 (-)
G1533380 NA non-coding upstream 33335 27189622 ~ 27189973 (-)
G1533383 NA non-coding upstream 36871 27193158 ~ 27193378 (-)
G1533387 NA non-coding upstream 39548 27195835 ~ 27196116 (-)
G1533388 NA non-coding upstream 40316 27196603 ~ 27207572 (-)
G1531236 NA other downstream 1443321 25696539 ~ 25708874 (-)
LOC110495915 NA other downstream 1578524 25571910 ~ 25574981 (-)
G1531142 NA other downstream 1629015 25519421 ~ 25523180 (-)
G1530967 LOC106574270 other downstream 2001201 25150068 ~ 25150994 (-)
G1529613 NA other downstream 2758511 24393375 ~ 24393684 (-)
G1533378 NA other upstream 31335 27187622 ~ 27189549 (-)
LOC110495948 LOC106574314 other upstream 597887 27754174 ~ 27798978 (-)
LOC110496785 LOC106574363 other upstream 704759 27839770 ~ 27914607 (-)
LOC110495955 LOC106574324 other upstream 878677 27995381 ~ 28092196 (-)
LOC110495963 LOC106574327 other upstream 1195091 28241494 ~ 28368147 (-)

Expression


Co-expression Network