LOC110495941 (LOC100196748)


Basic Information

Item Value
gene id LOC110495941
gene name LOC100196748
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 27388709 ~ 27395340 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571478.2
GAATGGGCAGCTTAAACCAATCTCGCGGTGTCAACATTTTTGGGCGTACGTAGGATTTATAGGAAACCATACAAATATTTGTTGATGCACGTAGTTAGCGGACGTTTTTCCACCATGAAAGGGCTTTACTGTAAAGTGGGTGAAACTGCTGCAGAGGCGAAATTTGTCATCCAGGAAACGAATGTACCCAGTGACCTCGGTAGCAACCAGGTTAAAGTGCAAGTGAAGGCATGTGCCCTTAGTCCACTGGATTTAAAACTACATGAGGATCTAAAGTTGCAAAGGGACCTGGTGCCAGTAGGGAGGGAGATTGTTGGGATCGTCCTCCAAGttggGCCTAAGGTGACCTTTTTCCAACCTGATGATGAAGTTGTAGGAATTCTGCCCTTGGATACAGCGATGTCTGGTTTGTGCGAAGCCGTCGTCATCAACGAGAATCATCTTGTGCAGAAGCCAGAGAAGTTGAGATGGGTGGAGGTGGCAGGGGCTATTCGGGATGGACTCCGGGCCTATACAGCCCTCCATACCCTAGCCCGTATGGCATCCGGGCACACACTGCTGGTGCTGGATGGAGCCAGTCCCTTTGGAGTTCTGTCCATCCAGCTGGCCCACTACCATGGGGTTAAAGTACTGGCGTCAGCTCTGTCCTCCGAAGACCAGAAGTTCCTGGAGCAGCTTCGGCCCAGCGTCGGAGTGCGAGAGTCTCTTGTAGCCAGAGTGATAGGTGTGTGGGATACCAAGGTGGACCTGGTGGATTCCTGTTTGGAAGAGACAGGCGGTCTAGGGGTGGACATTGTCATTGACTCTGGAGTGAGATTGCATGAGGAGGAGCCAGAGGCCAGGTGTCTTCTGCCCTACAAGCATGACATCATCACCCTGCTCGGGGTCGGAGGTCACTGGGTTACAACTGAGCAAAACCTGCAGCTGGACCCTCCAGATAGCCGCAGCCTCTTCCTGAAGGCCGCCTCCCTGTCCTTCCTCAACGAGGAGGTGTGGGGGGCATCCAGTGCCCGCCAGGGGAGGTACCTCCACATCATGAAGGATATAGTGGAGAAGCTTTCCACTGGGACCTTAAGGCCCCAGCTAGAGGACCCAGTGCCTTTGTATGATGCCACAGTTTCCATGGAGATGGTGCAAAAGAAACAAGTCCGTAAGAGGTTGGTTATTCAACTCTGAGGCGGACAGACACTTGTCCAGCATTCCCCTTGTCAAAGACAGGCCCCCAAATTCTGCCTCTCATATTTCCTATGTATTTTTGgccagcagtggtggaaaaagtacccaattgtcatacttgagtagtagtaaagataccttaatagaaagttactcaaataagtcacccagtaaaattctacttgagtaagtcTAAAACTATTTGGgttgtaaatgtaattgctcaaatatacttaagtatcaaaagtaaaagtataaattcaAATTCCtaaggatagccaggggcacactccaacattcagacatttatttacaaaagatgcatgtgtttagtgagaccGCCAGAgcataggcagtagggatgaccacttgttctcttgataagtgtgtgaatttcacttttttttttctgtcctgctcagcgttcaaaatgtaacgagtttTTGGTTggaagggaaaatgtatggaataaaaagtacaaTACTTTctataggaatgtagtgaagtaatagtacagataccccaagaaaataatactttaaagtacaacttaatcggtggtgtaaagtacttgccAGTCATTCCAATACAATGTAAATATGTGCAAAGTTTGAGTTTATCAAAACATATCAAATGAGATGGATGTCTAAATGTTTGCTCTGCTTAGTGTAATTACATACAGCACATTTGAGGTTTGTCCTTTTATTAAAAACCTTTGTTAATCCTCAA
>XM_021571479.2
GAATGGGCAGCTTAAACCAATCTCGCGGTGTCAACATTTTTGGGCGTACGTAGGATTTATAGGAAACCATACAAATATTTGTTGATGCACGTAGTTAGCGGACGTTTTTCCACCATGAAAGGGCTTTACTGTAAAGTGGGTGAAACTGCTGCAGAGGCGAAATTTGTCATCCAGGAAACGAATGTACCCAGTGACCTCGGTAGCAACCAGGTTAAAGTGCAAGTGAAGGCATGTGCCCTTAGTCCACTGGATTTAAAACTACATGAGGATCTAAAGTTGCAAAGGGACCTGGTGCCAGTAGGGAGGGAGATTGTTGGGATCGTCCTCCAAGttggGCCTAAGGTGACCTTTTTCCAACCTGATGATGAAGTTGTAGGAATTCTGCCCTTGGATACAGCGATGTCTGGTTTGTGCGAAGCCGTCGTCATCAACGAGAATCATCTTGTGCAGAAGCCAGAGAAGTTGAGATGGGTGGAGGTGGCAGGGGCTATTCGGGATGGACTCCGGGCCTATACAGCCCTCCATACCCTAGCCCGTATGGCATCCGGGCACACACTGCTGGTGCTGGATGGAGCCAGTCCCTTTGGAGTTCTGTCCATCCAGCTGGCCCACTACCATGGGGTTAAAGTACTGGCGTCAGCTCTGTCCTCCGAAGACCAGAAGTTCCTGGAGCAGCTTCGGCCCAGCGTCGCCAGAGTGATAGGTGTGTGGGATACCAAGGTGGACCTGGTGGATTCCTGTTTGGAAGAGACAGGCGGTCTAGGGGTGGACATTGTCATTGACTCTGGAGTGAGATTGCATGAGGAGGAGCCAGAGGCCAGGTGTCTTCTGCCCTACAAGCATGACATCATCACCCTGCTCGGGGTCGGAGGTCACTGGGTTACAACTGAGCAAAACCTGCAGCTGGACCCTCCAGATAGCCGCAGCCTCTTCCTGAAGGCCGCCTCCCTGTCCTTCCTCAACGAGGAGGTGTGGGGGGCATCCAGTGCCCGCCAGGGGAGGTACCTCCACATCATGAAGGATATAGTGGAGAAGCTTTCCACTGGGACCTTAAGGCCCCAGCTAGAGGACCCAGTGCCTTTGTATGATGCCACAGTTTCCATGGAGATGGTGCAAAAGAAACAAGTCCGTAAGAGGTTGGTTATTCAACTCTGAGGCGGACAGACACTTGTCCAGCATTCCCCTTGTCAAAGACAGGCCCCCAAATTCTGCCTCTCATATTTCCTATGTATTTTTGgccagcagtggtggaaaaagtacccaattgtcatacttgagtagtagtaaagataccttaatagaaagttactcaaataagtcacccagtaaaattctacttgagtaagtcTAAAACTATTTGGgttgtaaatgtaattgctcaaatatacttaagtatcaaaagtaaaagtataaattcaAATTCCtaaggatagccaggggcacactccaacattcagacatttatttacaaaagatgcatgtgtttagtgagaccGCCAGAgcataggcagtagggatgaccacttgttctcttgataagtgtgtgaatttcacttttttttttctgtcctgctcagcgttcaaaatgtaacgagtttTTGGTTggaagggaaaatgtatggaataaaaagtacaaTACTTTctataggaatgtagtgaagtaatagtacagataccccaagaaaataatactttaaagtacaacttaatcggtggtgtaaagtacttgccAGTCATTCCAATACAATGTAAATATGTGCAAAGTTTGAGTTTATCAAAACATATCAAATGAGATGGATGTCTAAATGTTTGCTCTGCTTAGTGTAATTACATACAGCACATTTGAGGTTTGTCCTTTTATTAAAAACCTTTGTTAATCCTCAA

Function

NR:

description
quinone oxidoreductase-like protein 1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571478.2 False 1905 mRNA 0.46 14 27388709 27395340
XM_021571479.2 True 1884 mRNA 0.46 13 27388709 27395340

Neighbor

gene id symbol gene type direction distance location
LOC110495938 LOC106574308 coding downstream 24345 27257486 ~ 27364364 (-)
LOC110495936 LOC106574306 coding downstream 169236 27215066 ~ 27219473 (-)
LOC110495935 fstl1 coding downstream 203261 27158978 ~ 27185448 (-)
LOC110495934 LOC106574305 coding downstream 232422 27152195 ~ 27156287 (-)
LOC110495932 LOC106574304 coding downstream 248222 27096980 ~ 27140487 (-)
LOC118941127 NA coding upstream 128519 27523859 ~ 27526447 (-)
LOC110495945 LOC106574379 coding upstream 178191 27573531 ~ 27607434 (-)
LOC110495948 LOC106574314 coding upstream 359018 27754174 ~ 27798978 (-)
cpb2 cpb2 coding upstream 412834 27808174 ~ 27819821 (-)
LOC110496785 LOC106574363 coding upstream 444430 27839770 ~ 27914607 (-)
G1533477 NA non-coding downstream 49016 27339456 ~ 27339693 (-)
G1533473 NA non-coding downstream 55875 27332563 ~ 27332834 (-)
G1533442 NA non-coding downstream 58185 27330257 ~ 27330524 (-)
G1533468 NA non-coding downstream 61638 27326824 ~ 27327071 (-)
G1533465 NA non-coding downstream 64155 27324282 ~ 27324554 (-)
G1533550 LOC106574310 non-coding upstream 53196 27448536 ~ 27449146 (-)
G1533549 LOC106575085 non-coding upstream 79956 27475296 ~ 27475888 (-)
G1533563 NA non-coding upstream 80945 27476285 ~ 27476547 (-)
G1533584 NA non-coding upstream 107306 27502646 ~ 27588350 (-)
G1533579 NA non-coding upstream 143726 27539066 ~ 27579929 (-)
G1533378 NA other downstream 199160 27187622 ~ 27189549 (-)
G1531236 NA other downstream 1679835 25696539 ~ 25708874 (-)
LOC110495915 NA other downstream 1815038 25571910 ~ 25574981 (-)
G1531142 NA other downstream 1865529 25519421 ~ 25523180 (-)
G1530967 LOC106574270 other downstream 2237715 25150068 ~ 25150994 (-)
LOC110495955 LOC106574324 other upstream 639624 27995381 ~ 28092196 (-)
LOC110495963 LOC106574327 other upstream 956038 28241494 ~ 28368147 (-)
G1536703 NA other upstream 2889032 30284372 ~ 30284762 (-)

Expression


Co-expression Network