LOC110495942 (pknx1)


Basic Information

Item Value
gene id LOC110495942
gene name pknx1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 27462439 ~ 27477815 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571484.2
GCGGGACAAGGCATGTTCAGAATTGCTTCTCCTCCCACATGTTGAATATTAATGAGAGAAAATAGTCTGCGAGCCTATACGTAGTGACGACACACGAAAACTGCGGGCCCGGATTGCAGCAGCCCCTTGTCACTGTGACGAAGATTGGCACTAAGGACTGGTAGGCACAGGTCTTGGACTGGAATGCCCGAGTATTGGCATCATTGGCAGCGACCATGATGGAAGCCCATTCGGCATCTCTAGATGAGTACCCGGAGGTGGATGAGGTCTTGGTGCAGATGCGCGTGGGAGCGGATGTGGAGGGGGATCCAGAGCAGAGTCTGAGCGAGGGGGGAGCAGGCAGCCCCTCTGCCATGCAGCCCCAGACACCCATGGACACAGACAAGCAGGCCATCTACAGGCACCCCCTGTTCCCTCTGCTGGCCCTACTCTTTGAGAAGTGTGAGCAGTCGACTCAGAGCTCGGACTGCGTCAGCTCTGCCAGCTTCAATGTGGACATTGAGAACTTTGTCCGTAGCCAGAAGAAAGAGGGCAAGGGCTTCTTCTGTGACGACCCAGACGTGGACAACCTGATGGTGAAGGCCATCCAGGTGTTGCGTATCCACCTCCTGGAGCTGGAGAAAGTGAGCGACTTGTGTAAGGACTTCTGTAGCCGCTACATCGCCTGCCTGCGCACCAAGATGAACAGTGAGACCCTGCTTAGTGGGGGAGAAACTGACagcccctgttcccctgtccaGATTCAGACCTCCAGCCCACTGACAGGAACCCTCAGCCCTCAAGGCATTGTTATGTCAGCCTCGTCCCTGCAGCAGGGCAACGTTACCCTGACAACAGTCAATTCTGCTGGCCAAGTGTTAGCAGGTGGTACAGTGTACCAGCCCATCACAGTAGTCACTCCTCAGGGACAAGTGGTTGGACAAGCTATCTCACCCCAGACAATACGCATCAACAACACACAGCTCCAGTTGCAGCTCAATCAGGACCTGAGCAGTTTCTTCACCCAGGAGGACAGCTCACCCAAGAGCAACAAGAGGGGCGTCCTGCCCAAATCAGCCACCAACATCATGCGCACCTGGCTCTTCCAGCACATAGGGcatcccTATCCCACAGAGGACGAGAAGAAACAGCTCGCTATACAGACCAACCTGACCCTGCTGCAGGTCAACAACTGgttCATTAATGCTAGGAGGCGGATCCTCCAGCCCATGATGGACAGCAGTGCGTCGGACACGCCCAAGAGCAGGAAGAGGACTCCCCAGAGCCGGCCCACCCAGCGTTTCTGGCCCATGGCCAACAACATTGCCTCGGCCGGTGTAGGGCAAGAGGTGGCCATGGACGATGACGTTACCATGGTGACGATGGGCATGAGTGTAGACGAGCTGCAGACGCTGACATCAGACGGTGCAACACTGGCCATGCAGCAGGTGATGATGGGAGGAcacagcgaggaggaggagggcgagagtgaggaggaagaagaggaggagggggctgACATGGCCGGATTGGAGTGACATACCACTACAGCGGGATGTGATGTCACACCCTCGTGCATGCCTGTGTTTGACAATATTACTCAACACTCATCAGTGTCCAAGACTATCCACACTAGGCCTTTAAGGTCCTACTAGAAACAGAGAAAAAAATATGCTATTTTTATATGTAAAATGTTTGGAATGAAGGCTGTTTATTTTCATTTAGCTTTTTTGCttagtgtttttatttttagatctttttttaaagaatatttaTGTATGAACATTGAATGTCCAATATGGCTGACCTGCTTTTCAAGGTCTGTTGGATTTCTCTAATAATAAAATGTTCAAGAAGGA
>XM_021571481.2
GCGGGACAAGGCATGTTCAGAATTGCTTCTCCTCCCACATGTTGAATATTAATGAGAGAAAATAGTCTGCGAGCCTATACGTAGTGACGACACACGAAAACTGCGGGCCCGGATTGCAGCAGCCCCTTGTCACTGTGACGAAGATTGGCACTAAGGACTGGTAGGCACAGGTCTTGGACTGGAATGCCCGAGTATTGGCATCATTGGCAGCGACCATGATGGAAGCCCATTCGGCATCTCTAGATGAGTACCCGGAGGTGGATGAGGTCTTGGTGCAGATGCGCGTGGGAGCGGATGTGGAGGGGGATCCAGAGCAGAGTCTGAGCGAGGGGGGAGCAGGCAGCCCCTCTGCCATGCAGCCCCAGACACCCATGGACACAGACAAGCAGGCCATCTACAGGCACCCCCTGTTCCCTCTGCTGGCCCTACTCTTTGAGAAGTGTGAGCAGTCGACTCAGAGCTCGGACTGCGTCAGCTCTGCCAGCTTCAATGTGGACATTGAGAACTTTGTCCGTAGCCAGAAGAAAGAGGGCAAGGGCTTCTTCTGTGACGACCCAGACGTGGACAACCTGATGGTGAAGGCCATCCAGGTGTTGCGTATCCACCTCCTGGAGCTGGAGAAAGTGAGCGACTTGTGTAAGGACTTCTGTAGCCGCTACATCGCCTGCCTGCGCACCAAGATGAACAGTGAGACCCTGCTTAGTGGGGGAGAAACTGACagcccctgttcccctgtccaGATTCAGACCTCCAGCCCACTGACAGGAACCCTCAGCCCTCAAGGCATTGTTATGTCAGCCTCGTCCCTGCAGCAGGGCAACGTTACCCTGACAACAGTCAATTCTGCTGGCCAAGTGTTAGCAGGTATGTCTCCGTGGCATACCACCTCTACAGGTGGTACAGTGTACCAGCCCATCACAGTAGTCACTCCTCAGGGACAAGTGGTTGGACAAGCTATCTCACCCCAGACAATACGCATCAACAACACACAGCTCCAGTTGCAGCTCAATCAGGACCTGAGCAGTTTCTTCACCCAGGAGGACAGCTCACCCAAGAGCAACAAGAGGGGCGTCCTGCCCAAATCAGCCACCAACATCATGCGCACCTGGCTCTTCCAGCACATAGGGcatcccTATCCCACAGAGGACGAGAAGAAACAGCTCGCTATACAGACCAACCTGACCCTGCTGCAGGTCAACAACTGgttCATTAATGCTAGGAGGCGGATCCTCCAGCCCATGATGGACAGCAGTGCGTCGGACACGCCCAAGAGCAGGAAGAGGACTCCCCAGAGCCGGCCCACCCAGCGTTTCTGGCCCATGGCCAACAACATTGCCTCGGCCGGTGTAGGGCAAGAGGTGGCCATGGACGATGACGTTACCATGGTGACGATGGGCATGAGTGTAGACGAGCTGCAGACGCTGACATCAGACGGTGCAACACTGGCCATGCAGCAGGTGATGATGGGAGGAcacagcgaggaggaggagggcgagagtgaggaggaagaagaggaggagggggctgACATGGCCGGATTGGAGTGACATACCACTACAGCGGGATGTGATGTCACACCCTCGTGCATGCCTGTGTTTGACAATATTACTCAACACTCATCAGTGTCCAAGACTATCCACACTAGGCCTTTAAGGTCCTACTAGAAACAGAGAAAAAAATATGCTATTTTTATATGTAAAATGTTTGGAATGAAGGCTGTTTATTTTCATTTAGCTTTTTTGCttagtgtttttatttttagatctttttttaaagaatatttaTGTATGAACATTGAATGTCCAATATGGCTGACCTGCTTTTCAAGGTCTGTTGGATTTCTCTAATAATAAAATGTTCAAGAAGGATATCCCT
>XM_036952449.1
TAACAATCGACGCTACATGCTCGAATGCAATGGCTCGCAATGGAATGAGCCAATGTGCACTTTGCAGAATGAACAGTGAGCCAAAAGACTGATCACACATGAAGGACTGGTAGGCACAGGTCTTGGACTGGAATGCCCGAGTATTGGCATCATTGGCAGCGACCATGATGGAAGCCCATTCGGCATCTCTAGATGAGTACCCGGAGGTGGATGAGGTCTTGGTGCAGATGCGCGTGGGAGCGGATGTGGAGGGGGATCCAGAGCAGAGTCTGAGCGAGGGGGGAGCAGGCAGCCCCTCTGCCATGCAGCCCCAGACACCCATGGACACAGACAAGCAGGCCATCTACAGGCACCCCCTGTTCCCTCTGCTGGCCCTACTCTTTGAGAAGTGTGAGCAGTCGACTCAGAGCTCGGACTGCGTCAGCTCTGCCAGCTTCAATGTGGACATTGAGAACTTTGTCCGTAGCCAGAAGAAAGAGGGCAAGGGCTTCTTCTGTGACGACCCAGACGTGGACAACCTGATGGTGAAGGCCATCCAGGTGTTGCGTATCCACCTCCTGGAGCTGGAGAAAGTGAGCGACTTGTGTAAGGACTTCTGTAGCCGCTACATCGCCTGCCTGCGCACCAAGATGAACAGTGAGACCCTGCTTAGTGGGGGAGAAACTGACagcccctgttcccctgtccaGATTCAGACCTCCAGCCCACTGACAGGAACCCTCAGCCCTCAAGGCATTGTTATGTCAGCCTCGTCCCTGCAGCAGGGCAACGTTACCCTGACAACAGTCAATTCTGCTGGCCAAGTGTTAGCAGGTATGTCTCCGTGGCATACCACCTCTACAGGTGGTACAGTGTACCAGCCCATCACAGTAGTCACTCCTCAGGGACAAGTGGTTGGACAAGCTATCTCACCCCAGACAATACGCATCAACAACACACAGCTCCAGTTGCAGCTCAATCAGGACCTGAGCAGTTTCTTCACCCAGGAGGACAGCTCACCCAAGAGCAACAAGAGGGGCGTCCTGCCCAAATCAGCCACCAACATCATGCGCACCTGGCTCTTCCAGCACATAGGGcatcccTATCCCACAGAGGACGAGAAGAAACAGCTCGCTATACAGACCAACCTGACCCTGCTGCAGGTCAACAACTGgttCATTAATGCTAGGAGGCGGATCCTCCAGCCCATGATGGACAGCAGTGCGTCGGACACGCCCAAGAGCAGGAAGAGGACTCCCCAGAGCCGGCCCACCCAGCGTTTCTGGCCCATGGCCAACAACATTGCCTCGGCCGGTGTAGGGCAAGAGGTGGCCATGGACGATGACGTTACCATGGTGACGATGGGCATGAGTGTAGACGAGCTGCAGACGCTGACATCAGACGGTGCAACACTGGCCATGCAGCAGGTGATGATGGGAGGAcacagcgaggaggaggagggcgagagtgaggaggaagaagaggaggagggggctgACATGGCCGGATTGGAGTGACATACCACTACAGCGGGATGTGATGTCACACCCTCGTGCATGCCTGTGTTTGACAATATTACTCAACACTCATCAGTGTCCAAGACTATCCACACTAGGCCTTTAAGGTCCTACTAGAAACAGAGAAAAAAATATGCTATTTTTATATGTAAAATGTTTGGAATGAAGGCTGTTTATTTTCATTTAGCTTTTTTGCttagtgtttttatttttagatctttttttaaagaatatttaTGTATGAACATTGAATGTCCAATATGGCTGACCTGCTTTTCAAGGTCTGTTGGATTTCTCTAATAATAAAATGTTCAAGAAGGA
>XM_021571483.2
GGAAAAGGCGCATTGGAAAGGGACTGGTAGGCACAGGTCTTGGACTGGAATGCCCGAGTATTGGCATCATTGGCAGCGACCATGATGGAAGCCCATTCGGCATCTCTAGATGAGTACCCGGAGGTGGATGAGGTCTTGGTGCAGATGCGCGTGGGAGCGGATGTGGAGGGGGATCCAGAGCAGAGTCTGAGCGAGGGGGGAGCAGGCAGCCCCTCTGCCATGCAGCCCCAGACACCCATGGACACAGACAAGCAGGCCATCTACAGGCACCCCCTGTTCCCTCTGCTGGCCCTACTCTTTGAGAAGTGTGAGCAGTCGACTCAGAGCTCGGACTGCGTCAGCTCTGCCAGCTTCAATGTGGACATTGAGAACTTTGTCCGTAGCCAGAAGAAAGAGGGCAAGGGCTTCTTCTGTGACGACCCAGACGTGGACAACCTGATGGTGAAGGCCATCCAGGTGTTGCGTATCCACCTCCTGGAGCTGGAGAAAGTGAGCGACTTGTGTAAGGACTTCTGTAGCCGCTACATCGCCTGCCTGCGCACCAAGATGAACAGTGAGACCCTGCTTAGTGGGGGAGAAACTGACagcccctgttcccctgtccaGATTCAGACCTCCAGCCCACTGACAGGAACCCTCAGCCCTCAAGGCATTGTTATGTCAGCCTCGTCCCTGCAGCAGGGCAACGTTACCCTGACAACAGTCAATTCTGCTGGCCAAGTGTTAGCAGGTATGTCTCCGTGGCATACCACCTCTACAGGTGGTACAGTGTACCAGCCCATCACAGTAGTCACTCCTCAGGGACAAGTGGTTGGACAAGCTATCTCACCCCAGACAATACGCATCAACAACACACAGCTCCAGTTGCAGCTCAATCAGGACCTGAGCAGTTTCTTCACCCAGGAGGACAGCTCACCCAAGAGCAACAAGAGGGGCGTCCTGCCCAAATCAGCCACCAACATCATGCGCACCTGGCTCTTCCAGCACATAGGGcatcccTATCCCACAGAGGACGAGAAGAAACAGCTCGCTATACAGACCAACCTGACCCTGCTGCAGGTCAACAACTGgttCATTAATGCTAGGAGGCGGATCCTCCAGCCCATGATGGACAGCAGTGCGTCGGACACGCCCAAGAGCAGGAAGAGGACTCCCCAGAGCCGGCCCACCCAGCGTTTCTGGCCCATGGCCAACAACATTGCCTCGGCCGGTGTAGGGCAAGAGGTGGCCATGGACGATGACGTTACCATGGTGACGATGGGCATGAGTGTAGACGAGCTGCAGACGCTGACATCAGACGGTGCAACACTGGCCATGCAGCAGGTGATGATGGGAGGAcacagcgaggaggaggagggcgagagtgaggaggaagaagaggaggagggggctgACATGGCCGGATTGGAGTGACATACCACTACAGCGGGATGTGATGTCACACCCTCGTGCATGCCTGTGTTTGACAATATTACTCAACACTCATCAGTGTCCAAGACTATCCACACTAGGCCTTTAAGGTCCTACTAGAAACAGAGAAAAAAATATGCTATTTTTATATGTAAAATGTTTGGAATGAAGGCTGTTTATTTTCATTTAGCTTTTTTGCttagtgtttttatttttagatctttttttaaagaatatttaTGTATGAACATTGAATGTCCAATATGGCTGACCTGCTTTTCAAGGTCTGTTGGATTTCTCTAATAATAAAATGTTCAAGAAGGA
>XM_021571482.2
TACAGACTACTGGACATTCGAATGTTATTAGGAGAGATACCTATCGATGACCGCAACGTCGATGGGATGTGTGCTGttgacagttttttttatttgttcaaCATTTGAAAGCACCCATATTATATGATACATGTAGCCTGAGCCGCTATACGATATTTAGACAGCGAGGGTAGGATAAATCGGACTGGTAGGCACAGGTCTTGGACTGGAATGCCCGAGTATTGGCATCATTGGCAGCGACCATGATGGAAGCCCATTCGGCATCTCTAGATGAGTACCCGGAGGTGGATGAGGTCTTGGTGCAGATGCGCGTGGGAGCGGATGTGGAGGGGGATCCAGAGCAGAGTCTGAGCGAGGGGGGAGCAGGCAGCCCCTCTGCCATGCAGCCCCAGACACCCATGGACACAGACAAGCAGGCCATCTACAGGCACCCCCTGTTCCCTCTGCTGGCCCTACTCTTTGAGAAGTGTGAGCAGTCGACTCAGAGCTCGGACTGCGTCAGCTCTGCCAGCTTCAATGTGGACATTGAGAACTTTGTCCGTAGCCAGAAGAAAGAGGGCAAGGGCTTCTTCTGTGACGACCCAGACGTGGACAACCTGATGGTGAAGGCCATCCAGGTGTTGCGTATCCACCTCCTGGAGCTGGAGAAAGTGAGCGACTTGTGTAAGGACTTCTGTAGCCGCTACATCGCCTGCCTGCGCACCAAGATGAACAGTGAGACCCTGCTTAGTGGGGGAGAAACTGACagcccctgttcccctgtccaGATTCAGACCTCCAGCCCACTGACAGGAACCCTCAGCCCTCAAGGCATTGTTATGTCAGCCTCGTCCCTGCAGCAGGGCAACGTTACCCTGACAACAGTCAATTCTGCTGGCCAAGTGTTAGCAGGTATGTCTCCGTGGCATACCACCTCTACAGGTGGTACAGTGTACCAGCCCATCACAGTAGTCACTCCTCAGGGACAAGTGGTTGGACAAGCTATCTCACCCCAGACAATACGCATCAACAACACACAGCTCCAGTTGCAGCTCAATCAGGACCTGAGCAGTTTCTTCACCCAGGAGGACAGCTCACCCAAGAGCAACAAGAGGGGCGTCCTGCCCAAATCAGCCACCAACATCATGCGCACCTGGCTCTTCCAGCACATAGGGcatcccTATCCCACAGAGGACGAGAAGAAACAGCTCGCTATACAGACCAACCTGACCCTGCTGCAGGTCAACAACTGgttCATTAATGCTAGGAGGCGGATCCTCCAGCCCATGATGGACAGCAGTGCGTCGGACACGCCCAAGAGCAGGAAGAGGACTCCCCAGAGCCGGCCCACCCAGCGTTTCTGGCCCATGGCCAACAACATTGCCTCGGCCGGTGTAGGGCAAGAGGTGGCCATGGACGATGACGTTACCATGGTGACGATGGGCATGAGTGTAGACGAGCTGCAGACGCTGACATCAGACGGTGCAACACTGGCCATGCAGCAGGTGATGATGGGAGGAcacagcgaggaggaggagggcgagagtgaggaggaagaagaggaggagggggctgACATGGCCGGATTGGAGTGACATACCACTACAGCGGGATGTGATGTCACACCCTCGTGCATGCCTGTGTTTGACAATATTACTCAACACTCATCAGTGTCCAAGACTATCCACACTAGGCCTTTAAGGTCCTACTAGAAACAGAGAAAAAAATATGCTATTTTTATATGTAAAATGTTTGGAATGAAGGCTGTTTATTTTCATTTAGCTTTTTTGCttagtgtttttatttttagatctttttttaaagaatatttaTGTATGAACATTGAATGTCCAATATGGCTGACCTGCTTTTCAAGGTCTGTTGGATTTCTCTAATAATAAAATGTTCAAGAAGGA

Function

NR:

description
homeobox protein PKNOX1-like isoform X1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571484.2 False 1838 mRNA 0.53 11 27462439 27477808
XM_021571481.2 False 1875 mRNA 0.53 11 27462439 27477815
XM_036952449.1 False 1817 mRNA 0.52 11 27462639 27477808
XM_021571483.2 False 1734 mRNA 0.53 11 27462785 27477808
XM_021571482.2 True 1895 mRNA 0.52 11 27462840 27477808

Neighbor

gene id symbol gene type direction distance location
LOC110495939 LOC106574310 coding upstream 5212 27395518 ~ 27457227 (+)
LOC110495937 LOC106574307 coding upstream 205705 27246352 ~ 27256734 (+)
LOC110495930 LOC106574301 coding upstream 429727 26982981 ~ 27032712 (+)
kynu LOC106575231 coding upstream 1195307 26253121 ~ 26267132 (+)
bzw1a LOC106574295 coding upstream 1489120 25961717 ~ 25973319 (+)
LOC110495943 LOC106574311 coding downstream 9481 27487296 ~ 27520483 (+)
LOC110495944 LOC106574312 coding downstream 48637 27526452 ~ 27548466 (+)
LOC118941128 NA coding downstream 78588 27556403 ~ 27567412 (+)
LOC110495947 LOC106575089 coding downstream 151662 27629477 ~ 27750060 (+)
alg11 alg11 coding downstream 342753 27820568 ~ 27829342 (+)
G1532827 NA non-coding upstream 9498 27452458 ~ 27452941 (+)
G1532803 NA non-coding upstream 77575 27384550 ~ 27384864 (+)
G1532773 NA non-coding upstream 123342 27338834 ~ 27339097 (+)
G1532769 NA non-coding upstream 131723 27330229 ~ 27330716 (+)
G1532766 NA non-coding upstream 137394 27324788 ~ 27325045 (+)
G1532920 NA non-coding downstream 327440 27805255 ~ 27810891 (+)
LOC110495952 NA non-coding downstream 352264 27829955 ~ 27843859 (+)
G1533033 NA non-coding downstream 372649 27850464 ~ 27851051 (+)
G1533099 NA non-coding downstream 443790 27921605 ~ 27923875 (+)
si:dkey-1h24.6 LOC106574316 non-coding downstream 448477 27925782 ~ 27931338 (+)
G1532307 NA other upstream 704762 26757369 ~ 26757677 (+)
LOC110496782 LOC106575224 other upstream 1518761 25930184 ~ 25943678 (+)
G1530923 LOC106574292 other upstream 1622704 25838506 ~ 25840353 (+)
G1530785 NA other upstream 1891093 25566471 ~ 25571346 (+)
LOC110495895 LOC106574270 other upstream 2306544 25133210 ~ 25157338 (+)
LOC110495958 LOC106574318 other downstream 469263 27943362 ~ 27958807 (+)
G1533121 LOC106574322 other downstream 496998 27974813 ~ 28038476 (+)
LOC110495972 NA other downstream 1254960 28732589 ~ 28735229 (+)
G1534488 LOC106574337 other downstream 1326213 28804028 ~ 28804673 (+)

Expression


Co-expression Network