LOC118941127


Basic Information

Item Value
gene id LOC118941127
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 27523859 ~ 27526447 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005037418.1
CAAAATTTGCCCCCTGGAAACAACGCATAACAATAAAGATTATCTATAATATTTTCAAGATAATCGAGTGACCgatctaacaatggaaatacatgtcctcgaAGATGGAAGGCATGCGGGAGGtggcgagatcagTTCAGCCAATTATGGACTTCCATGACCAGCCCCTTCCTTTGGCTGTCACGACTTCCgacgaagtcggctcctctccttgttcgggcggcgttcggcgatcgacgtcacaggctttctagccatcaccgctccatttctcatatatccatttgttttgtcttgtttcatacacacctggttttcattccataATCACACTGCGTGcatttagtcctctgttcccctccatgtctttgtgtgtaattgtttattgttacGTGGATATTTGTCAGGCGCTGCACTTTTGTTATGTACCGTGTTTTTGGCACTAGTATGTTTTATGTGCTGTCATTGTTGACCGGTATTAAAGTGCGCCTGTTTACTGTAATCCGCTCTCCTGCACTTGACTTCGCCTCCCATATACACGACTAACATTGGCAGTGTGTTGATACTAATTTACTTACAGAAAAAAAGCAGGTGGATATAATATAATcattactttattttttattgcATCATaacatacatattatatattataaatGTGGATTTGTACACTACAATCTTCATTGTAACATGTTATAAAATATTCAGGCTCAAAAAACGAAGCACTAAAAACTTTACCAAACAGTTAATACATTTCATTGTTTGCCCATTGAGAAAAGAAAATGTAAAAAGAAAATCTTCAACATAAGAACAAAAAGAAGAGCCAAGCATAGACTGGTCACTGTTAAAACCACTAAGGGACAGATACAGTTACAAAGGCAGGGGGTAGTAGGGGGCACTCAGTTACGCTTAATGCTTTGTTCGTAACCAAGTGAGAAGTGGGAATTTACCACATACAACTGgggaaaaatccacttgaacgggcctccaactggtaattacttgTGGGAAACTCATTCACCATCCTGAGCTCCCCTTTCTCCTACATGCTGACATCATCTACTAAGGACATAACCTCAAAACTGCATTTCcggcagttaaatgcaacaaacattatttataaaaaatcTATTAATATAGTTTTTGAAcactataatttgtttacaaGTGTGAcagctgtacttttagtttatggttttCGCAGCTTGTTGGTCATTAGTCAATCAGCGTTTCTCGACGAGTTCAAAGCAGGTAATTGCAACCAACTAgtatttacgacttcacaactTGTAAATTCCCACCTCCCACTTGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005037418.1 True 1312 mRNA 0.39 2 27523859 27526447

Neighbor

gene id symbol gene type direction distance location
LOC110495941 LOC100196748 coding downstream 128519 27388709 ~ 27395340 (-)
LOC110495938 LOC106574308 coding downstream 159495 27257486 ~ 27364364 (-)
LOC110495936 LOC106574306 coding downstream 304386 27215066 ~ 27219473 (-)
LOC110495935 fstl1 coding downstream 338411 27158978 ~ 27185448 (-)
LOC110495934 LOC106574305 coding downstream 367572 27152195 ~ 27156287 (-)
LOC110495945 LOC106574379 coding upstream 47084 27573531 ~ 27607434 (-)
LOC110495948 LOC106574314 coding upstream 227911 27754174 ~ 27798978 (-)
cpb2 cpb2 coding upstream 281727 27808174 ~ 27819821 (-)
LOC110496785 LOC106574363 coding upstream 313323 27839770 ~ 27914607 (-)
LOC110495957 LOC106574318 coding upstream 422331 27948778 ~ 27974405 (-)
G1533563 NA non-coding downstream 47312 27476285 ~ 27476547 (-)
G1533549 LOC106575085 non-coding downstream 47971 27475296 ~ 27475888 (-)
G1533550 LOC106574310 non-coding downstream 74713 27448536 ~ 27449146 (-)
G1533477 NA non-coding downstream 184166 27339456 ~ 27339693 (-)
G1533473 NA non-coding downstream 191025 27332563 ~ 27332834 (-)
G1533579 NA non-coding upstream 12619 27539066 ~ 27579929 (-)
G1533568 NA non-coding upstream 16338 27542785 ~ 27544206 (-)
G1533679 NA non-coding upstream 127765 27654212 ~ 27654522 (-)
G1533680 NA non-coding upstream 128363 27654810 ~ 27655059 (-)
G1533685 NA non-coding upstream 132095 27658542 ~ 27658742 (-)
G1533378 NA other downstream 334310 27187622 ~ 27189549 (-)
G1531236 NA other downstream 1814985 25696539 ~ 25708874 (-)
LOC110495915 NA other downstream 1950188 25571910 ~ 25574981 (-)
G1531142 NA other downstream 2000679 25519421 ~ 25523180 (-)
G1530967 LOC106574270 other downstream 2372865 25150068 ~ 25150994 (-)
LOC110495955 LOC106574324 other upstream 508517 27995381 ~ 28092196 (-)
LOC110495963 LOC106574327 other upstream 824931 28241494 ~ 28368147 (-)
G1536703 NA other upstream 2757925 30284372 ~ 30284762 (-)

Expression


Co-expression Network