LOC118941128


Basic Information

Item Value
gene id LOC118941128
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 27556403 ~ 27567412 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005037419.1
tcgccgaacgccgcccgaacaaggagaggagccgacttcggcggaagtcgtgacatggcAATGGGTGTCCAGTTCGACTTCTCCCAGCTGAAATAGCGGAAATAACCATCACCCAGAAATGAAATGTCTTCACATAATACTGAAAAATATTAATTTTTGTCATCTGTCAATGGCAATCCACTTTTTTCATCTCCTTTAAACCGACATGCCAGCATTGAAAAGTGGTGATGTGCCATGTTGCTCGAGAACACCAACCCCAAAGAGAGGAGGAGGCAACCTTTATTTTGTCTGAAGCTAACTCCAGCTCACCAGTTGCTTCCCTCccaaacaaaataaaaatctaaGACACTGGTACACAAAATACCAAAACACAACACCAAGctaccctcaacccctcccgtctatctctgaagaccatccaccATCCATCTATTTGCCATgtatttttaactgtgctgtttcacaaatgTTCTGAGCctgtatacattttacggacacattctattttacattagttatcttgttgtttttagtcccacccttcaccTCCACTCAAACCCTCCAATCTATATTTTAACACTATCCATTTTTCAgttatatttgccatatattttacaactgtactgtgatgtttcacaaatgtTCTGaatctttctattctcatagtttctacagattgtaacaTTTGTGCTAGAAGTATTATTATATTGACAATGACTTTTAAAATCACctagcagtgctatttgcagagttagctccattTCTTGTTACCATACAGGTACTTCAATGATTTTGTGATTGATTGTGTGGAGTACTATTATCAGGAAGGTATGGGATGAAGAGCCCCGCCCACTGTGCAAACACtcgttgaatcaacgttgtttccacgccaTTTCAATTAAATAAACGTTGGAATAGTATagacattgagctgatttctgtgCCCAGTGGCCTGAGTGTTTCTCAGTTGTGAGCTAATCATGCAGAGGCACACACAGTGTAACTACTCCAATAACACTGTGCATATAGTGGAATCATACATTACCCTAATGATGAAATGGAAACAGAGTTTCTGAAAAATTTGATAAATGCCGACAGATCATTTGTTTGTTCAACATCGTGGGATctttttttgtgtctgtaaaattaattatga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005037419.1 True 1156 mRNA 0.39 4 27556403 27567412

Neighbor

gene id symbol gene type direction distance location
LOC110495944 LOC106574312 coding upstream 7937 27526452 ~ 27548466 (+)
LOC110495943 LOC106574311 coding upstream 35920 27487296 ~ 27520483 (+)
LOC110495942 pknx1 coding upstream 78588 27462439 ~ 27477815 (+)
LOC110495939 LOC106574310 coding upstream 99176 27395518 ~ 27457227 (+)
LOC110495937 LOC106574307 coding upstream 299669 27246352 ~ 27256734 (+)
LOC110495947 LOC106575089 coding downstream 62065 27629477 ~ 27750060 (+)
alg11 alg11 coding downstream 253156 27820568 ~ 27829342 (+)
LOC110495952 NA coding downstream 262543 27829955 ~ 27843859 (+)
si:dkey-1h24.6 LOC106574316 coding downstream 358370 27925782 ~ 27931338 (+)
LOC118941047 mdh1b coding downstream 370620 27938032 ~ 27940798 (+)
G1532837 NA non-coding upstream 79863 27476281 ~ 27476540 (+)
G1532827 NA non-coding upstream 103462 27452458 ~ 27452941 (+)
G1532803 NA non-coding upstream 171539 27384550 ~ 27384864 (+)
G1532773 NA non-coding upstream 217306 27338834 ~ 27339097 (+)
G1532769 NA non-coding upstream 225687 27330229 ~ 27330716 (+)
G1532920 NA non-coding downstream 237843 27805255 ~ 27810891 (+)
G1533033 NA non-coding downstream 283052 27850464 ~ 27851051 (+)
G1533099 NA non-coding downstream 354193 27921605 ~ 27923875 (+)
G1532307 NA other upstream 798726 26757369 ~ 26757677 (+)
LOC110496782 LOC106575224 other upstream 1612725 25930184 ~ 25943678 (+)
G1530923 LOC106574292 other upstream 1716668 25838506 ~ 25840353 (+)
G1530785 NA other upstream 1985057 25566471 ~ 25571346 (+)
LOC110495895 LOC106574270 other upstream 2400508 25133210 ~ 25157338 (+)
LOC110495958 LOC106574318 other downstream 379666 27943362 ~ 27958807 (+)
G1533121 LOC106574322 other downstream 407401 27974813 ~ 28038476 (+)
LOC110495972 NA other downstream 1165363 28732589 ~ 28735229 (+)
G1534488 LOC106574337 other downstream 1236616 28804028 ~ 28804673 (+)

Expression


Co-expression Network